Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487735

Identifier: 103487735

GI number: 103487735

Start: 2368246

End: 2369745

Strand: Direct

Name: 103487735

Synonym: Sala_2254

Alternate gene names: NA

Gene position: 2368246-2369745 (Clockwise)

Preceding gene: 103487734

Following gene: 103487736

Centisome position: 70.8

GC content: 69.33

Gene sequence:

>1500_bases
ATGAACGAGGTCGAATCGGCCGCCTTGATGCTCGCAGCGATGCTGCTGCTGGGCCTATTGGTCGCCTTTGCGATCTGGCG
GGCGCGCCGCCCCGTCACATCGTCGCCGGTCGTGCCACGCGCACCAAGGGCGCCCCGCGAGCGCCGCTTGTCTCAATTGT
CGCGCAAGGCGCCCGAAATCGCCGACGTCGAGATCGCGCCGTCGCGGCTTGCGCGGGTGAGCGGCAAAGCGCCGCTCGAA
CCGCCGCGCGATCTGACCATCGACGATGCGCATGAACCCGACATTCCGGTCGATGTCGTGGCCAAAGCGGCTATCGAAAC
AGTGGCAACCGAAGTCGAAGCATCCGCCAGCGAAGCGATCGGCGAGACGCGCGCCGCGCCGCTCACGCTGCACCTCGTTC
CGCAGATCCCGCTGCGCGATGCCATTTCGACGCACAGCTGGCTTGGCGGGCGCCCGCGGCTGGCGACGGGCATGGCCTGG
CCGCGGATCGACGACCAGCCCGCCGATTTCCTTGCGCAGCTCGGCTGCGCCGACCTGCCCCGCGAGTTGTGGGGCGGACG
CGGGCCGCGGCGCGGCGCGCTCGCCTTTTTCATCCATCGCCACCGGCCCGACGTGCGTGTGGTCCACGTCGGCGAACCGG
GGCCGCCACTCGCTCCGCCCTATGCGCTCAATGACGCCGAAGGTTGGTTCAGCCCGCACGGCGCCCTCGCCGGCGGCGAT
CTCCTGTCCTTTGCCGTGCGCGCCTTTCCGCAATGGCCGGTCGATCTTGTCGCCGCGGACACCGTCGATGCCGACCCGCG
CCGAAGCGATCCTGACGATCTCGACACCCGCGGCTACGACATCGCCGACCCCGCCTTCCACCCCTTCGACTGGGGCAGCC
TGACCGCGATGGCGGCGATCCTCGAATCGCGCCTCGACCGGCTGGTGAGCGAACCCGTCGGCGGTACCGCCCCGGCGGAC
GCGATCGAACGCTGCATCGCGATCAACCGCGAAGCGCGCGAGCGCGCTGCGGAGATCATCGGCATCATCCACGACAGCGC
GGTGCGCGATCCCTTTTCGCCCGGCGATGCGGCTGCGGTGATGGCGGCGCTCCATGCGATTCCGTGGGCGCGGTTCATCG
GCACGACAAACCCCGATGGCAGTGAGGCCTTCGAGCTTGTGACGCTGCCGCTGACGACGCACCGCGCCGACGCCGACCTC
TGGGTGCGCGATTATCGGATGATGCTCTTCGACCGCGCGAAGCACGCATGGTGCGCCGATCCCGCCAATCTCTCGGCGCC
CGCGCGCGCGCATTTCGAGCCGCTGTGGCAGGGCCTCGCGACACGCGAAATGGCGAGCACGGGCGGCGAATGCGACGGCG
ATCCCGTCCTGCTCGCGCTGCCGACGAGCGGATTGATGAGCCGACGCTTCGGTGACGATCAGACGCTGCTTGTCACGATT
GCCAGTGCCGACCTCGCGATCGGCGACTTTGCCAAAGCGCGGGCGCGACTGGTTCGCTGA

Upstream 100 bases:

>100_bases
GGATCTGACGCGCCGTCGCTTACCAACTGTTTAGGTCGATGCGCTAAATTACTCCATCGTGGCGCCGATCCGGCGCGGCG
TCGCCCGTTGGAGTGATGCA

Downstream 100 bases:

>100_bases
ACAGTTTTGCGATTGACGTTCCGGTCAACTTGCGGGCCATGCCGCCGCGCCCTAATCATCGATTCAAATCTGTGGGAGAG
ATGAATCGATGGCACGCATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 499; Mature: 499

Protein sequence:

>499_residues
MNEVESAALMLAAMLLLGLLVAFAIWRARRPVTSSPVVPRAPRAPRERRLSQLSRKAPEIADVEIAPSRLARVSGKAPLE
PPRDLTIDDAHEPDIPVDVVAKAAIETVATEVEASASEAIGETRAAPLTLHLVPQIPLRDAISTHSWLGGRPRLATGMAW
PRIDDQPADFLAQLGCADLPRELWGGRGPRRGALAFFIHRHRPDVRVVHVGEPGPPLAPPYALNDAEGWFSPHGALAGGD
LLSFAVRAFPQWPVDLVAADTVDADPRRSDPDDLDTRGYDIADPAFHPFDWGSLTAMAAILESRLDRLVSEPVGGTAPAD
AIERCIAINREARERAAEIIGIIHDSAVRDPFSPGDAAAVMAALHAIPWARFIGTTNPDGSEAFELVTLPLTTHRADADL
WVRDYRMMLFDRAKHAWCADPANLSAPARAHFEPLWQGLATREMASTGGECDGDPVLLALPTSGLMSRRFGDDQTLLVTI
ASADLAIGDFAKARARLVR

Sequences:

>Translated_499_residues
MNEVESAALMLAAMLLLGLLVAFAIWRARRPVTSSPVVPRAPRAPRERRLSQLSRKAPEIADVEIAPSRLARVSGKAPLE
PPRDLTIDDAHEPDIPVDVVAKAAIETVATEVEASASEAIGETRAAPLTLHLVPQIPLRDAISTHSWLGGRPRLATGMAW
PRIDDQPADFLAQLGCADLPRELWGGRGPRRGALAFFIHRHRPDVRVVHVGEPGPPLAPPYALNDAEGWFSPHGALAGGD
LLSFAVRAFPQWPVDLVAADTVDADPRRSDPDDLDTRGYDIADPAFHPFDWGSLTAMAAILESRLDRLVSEPVGGTAPAD
AIERCIAINREARERAAEIIGIIHDSAVRDPFSPGDAAAVMAALHAIPWARFIGTTNPDGSEAFELVTLPLTTHRADADL
WVRDYRMMLFDRAKHAWCADPANLSAPARAHFEPLWQGLATREMASTGGECDGDPVLLALPTSGLMSRRFGDDQTLLVTI
ASADLAIGDFAKARARLVR
>Mature_499_residues
MNEVESAALMLAAMLLLGLLVAFAIWRARRPVTSSPVVPRAPRAPRERRLSQLSRKAPEIADVEIAPSRLARVSGKAPLE
PPRDLTIDDAHEPDIPVDVVAKAAIETVATEVEASASEAIGETRAAPLTLHLVPQIPLRDAISTHSWLGGRPRLATGMAW
PRIDDQPADFLAQLGCADLPRELWGGRGPRRGALAFFIHRHRPDVRVVHVGEPGPPLAPPYALNDAEGWFSPHGALAGGD
LLSFAVRAFPQWPVDLVAADTVDADPRRSDPDDLDTRGYDIADPAFHPFDWGSLTAMAAILESRLDRLVSEPVGGTAPAD
AIERCIAINREARERAAEIIGIIHDSAVRDPFSPGDAAAVMAALHAIPWARFIGTTNPDGSEAFELVTLPLTTHRADADL
WVRDYRMMLFDRAKHAWCADPANLSAPARAHFEPLWQGLATREMASTGGECDGDPVLLALPTSGLMSRRFGDDQTLLVTI
ASADLAIGDFAKARARLVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53874; Mature: 53874

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEVESAALMLAAMLLLGLLVAFAIWRARRPVTSSPVVPRAPRAPRERRLSQLSRKAPEI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
ADVEIAPSRLARVSGKAPLEPPRDLTIDDAHEPDIPVDVVAKAAIETVATEVEASASEAI
CCEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
GETRAAPLTLHLVPQIPLRDAISTHSWLGGRPRLATGMAWPRIDDQPADFLAQLGCADLP
HHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCHHCCCCCCCCCCCHHHHHHHCCHHCCC
RELWGGRGPRRGALAFFIHRHRPDVRVVHVGEPGPPLAPPYALNDAEGWFSPHGALAGGD
HHHHCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
LLSFAVRAFPQWPVDLVAADTVDADPRRSDPDDLDTRGYDIADPAFHPFDWGSLTAMAAI
HHHHHHHHCCCCCHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
LESRLDRLVSEPVGGTAPADAIERCIAINREARERAAEIIGIIHDSAVRDPFSPGDAAAV
HHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
MAALHAIPWARFIGTTNPDGSEAFELVTLPLTTHRADADLWVRDYRMMLFDRAKHAWCAD
HHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
PANLSAPARAHFEPLWQGLATREMASTGGECDGDPVLLALPTSGLMSRRFGDDQTLLVTI
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHCCCCCEEEEEE
ASADLAIGDFAKARARLVR
ECCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MNEVESAALMLAAMLLLGLLVAFAIWRARRPVTSSPVVPRAPRAPRERRLSQLSRKAPEI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
ADVEIAPSRLARVSGKAPLEPPRDLTIDDAHEPDIPVDVVAKAAIETVATEVEASASEAI
CCEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
GETRAAPLTLHLVPQIPLRDAISTHSWLGGRPRLATGMAWPRIDDQPADFLAQLGCADLP
HHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCHHCCCCCCCCCCCHHHHHHHCCHHCCC
RELWGGRGPRRGALAFFIHRHRPDVRVVHVGEPGPPLAPPYALNDAEGWFSPHGALAGGD
HHHHCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
LLSFAVRAFPQWPVDLVAADTVDADPRRSDPDDLDTRGYDIADPAFHPFDWGSLTAMAAI
HHHHHHHHCCCCCHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
LESRLDRLVSEPVGGTAPADAIERCIAINREARERAAEIIGIIHDSAVRDPFSPGDAAAV
HHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
MAALHAIPWARFIGTTNPDGSEAFELVTLPLTTHRADADLWVRDYRMMLFDRAKHAWCAD
HHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
PANLSAPARAHFEPLWQGLATREMASTGGECDGDPVLLALPTSGLMSRRFGDDQTLLVTI
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHCCCCCEEEEEE
ASADLAIGDFAKARARLVR
ECCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA