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The map label for this gene is yhcM [H]

Identifier: 103487713

GI number: 103487713

Start: 2345592

End: 2346731

Strand: Reverse

Name: yhcM [H]

Synonym: Sala_2232

Alternate gene names: 103487713

Gene position: 2346731-2345592 (Counterclockwise)

Preceding gene: 103487714

Following gene: 103487711

Centisome position: 70.15

GC content: 67.54

Gene sequence:

>1140_bases
GTGACCAGCGTTCTTGCTGCTTACGACGCGCTCGTCGCCGCGGGCGAGCTGCGCCCCGACCCGGAGCAGCGCGCCGCCGC
GGTCAGGCTGAACCAGTTGCAGGAGGAATTGCAGGCGGTGCCGAAGCGCGGCAGCCTGCTGTGGCGCCTCGCGGGCCGCA
AGCCCGAGGCGCTGCGCGGCGTCTATCTGTGGGGCGCGGTCGGGCGCGGCAAGTCGATGCTGATGGACCTCTTCTACGAC
CAGCTTTCGATCGAGCGGAAGCGGCGCGTCCATTTCCACGCCTTCATGCTCGATGTTCATGCGCGGATGCGCGAAGTCCG
CAAAAGCGAGAGCGGCGATCCCATCCCGCTCGTCGCCGAGGCGCTGGCCGAGAATGTCCGCTGCCTCGCCTTCGACGAAA
TGGTCGTGAACAACAGCGCCGACGCGATGATCCTCTCGCGCCTGTTCACCGCGCTCATCGACCGCGGCGTAACCATGGTC
GCGACGTCGAACCGGCCGCCGAAGGATCTCTACAAGGACGGGCTCAATCGCGAGCATTTCCTGCCCTTCATCGCGCTGGT
CGAGGAACGGCTGGAGGTGATGGGGCTGAACGGCCCGACCGATTACCGCCGCGACCGGCTGGGGGACGGTGCGCGCTGGT
TCGTGCCCGCCGATGAGGAGGCGAGCGCCGCGCTCTCGGCCGCTTTTTTCCGCCTCACCGACTATCCGCCCGAGGACCGC
GCGCACGTCCCTTCGCTCGACCTCGATGTCGGGGGCGGGCGGACGCTGCATGTGCCGAAGGCGCTGAAGGGCGTGGCGGT
ATTTTCGTTCAAGCGACTCTGTGCGGAGGCGCGCGGGGCGTCGGACTATCTGGCGGTCGCGCGGCACTTTCACACGGTGA
TCATCGTCGGCATCCCGCGCATGGGACCGGAGAATCGCAACGAGGCCGCGCGCTTCGTGACGCTGATCGACGCGCTTTAC
GAATATAAGGTCAAGCTGCTCGCGAGCGCTGCGGCGATGCCCGACCAGCTTTATGTCGCGGGCGACGGCGCGTTCGAGTT
CGAGCGCACGGCGAGCCGCCTCGCGGAGATGCAGTCGGACGACTACCTCGCCCTAGGCCATGGCCAGGAGGATTCCCCCG
GCAATCTTCCCCCAGCGTGA

Upstream 100 bases:

>100_bases
CGGGGCGGCTGATCTTCCTGCGTGGGCTGGTCGTGCAGGGCGCCGATGACAGCCATATCGTGCTGAGTTTTGCCGGAACG
ATCCGCAAGGCCAGCACCGG

Downstream 100 bases:

>100_bases
GGTGTTGGCGGTGACATAGGCGAGGCTGCGGACGTAACGCACCTCGTGGGCGAGGTGCCCAACGGCCTGTTCTGCGGTGC
GGCGCAACGTGCGGAGCGGA

Product: AFG1-like ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MTSVLAAYDALVAAGELRPDPEQRAAAVRLNQLQEELQAVPKRGSLLWRLAGRKPEALRGVYLWGAVGRGKSMLMDLFYD
QLSIERKRRVHFHAFMLDVHARMREVRKSESGDPIPLVAEALAENVRCLAFDEMVVNNSADAMILSRLFTALIDRGVTMV
ATSNRPPKDLYKDGLNREHFLPFIALVEERLEVMGLNGPTDYRRDRLGDGARWFVPADEEASAALSAAFFRLTDYPPEDR
AHVPSLDLDVGGGRTLHVPKALKGVAVFSFKRLCAEARGASDYLAVARHFHTVIIVGIPRMGPENRNEAARFVTLIDALY
EYKVKLLASAAAMPDQLYVAGDGAFEFERTASRLAEMQSDDYLALGHGQEDSPGNLPPA

Sequences:

>Translated_379_residues
MTSVLAAYDALVAAGELRPDPEQRAAAVRLNQLQEELQAVPKRGSLLWRLAGRKPEALRGVYLWGAVGRGKSMLMDLFYD
QLSIERKRRVHFHAFMLDVHARMREVRKSESGDPIPLVAEALAENVRCLAFDEMVVNNSADAMILSRLFTALIDRGVTMV
ATSNRPPKDLYKDGLNREHFLPFIALVEERLEVMGLNGPTDYRRDRLGDGARWFVPADEEASAALSAAFFRLTDYPPEDR
AHVPSLDLDVGGGRTLHVPKALKGVAVFSFKRLCAEARGASDYLAVARHFHTVIIVGIPRMGPENRNEAARFVTLIDALY
EYKVKLLASAAAMPDQLYVAGDGAFEFERTASRLAEMQSDDYLALGHGQEDSPGNLPPA
>Mature_378_residues
TSVLAAYDALVAAGELRPDPEQRAAAVRLNQLQEELQAVPKRGSLLWRLAGRKPEALRGVYLWGAVGRGKSMLMDLFYDQ
LSIERKRRVHFHAFMLDVHARMREVRKSESGDPIPLVAEALAENVRCLAFDEMVVNNSADAMILSRLFTALIDRGVTMVA
TSNRPPKDLYKDGLNREHFLPFIALVEERLEVMGLNGPTDYRRDRLGDGARWFVPADEEASAALSAAFFRLTDYPPEDRA
HVPSLDLDVGGGRTLHVPKALKGVAVFSFKRLCAEARGASDYLAVARHFHTVIIVGIPRMGPENRNEAARFVTLIDALYE
YKVKLLASAAAMPDQLYVAGDGAFEFERTASRLAEMQSDDYLALGHGQEDSPGNLPPA

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=405, Percent_Identity=36.5432098765432, Blast_Score=248, Evalue=6e-66,
Organism=Escherichia coli, GI1789627, Length=377, Percent_Identity=37.4005305039788, Blast_Score=239, Evalue=2e-64,
Organism=Caenorhabditis elegans, GI17505769, Length=413, Percent_Identity=36.5617433414044, Blast_Score=260, Evalue=1e-69,
Organism=Saccharomyces cerevisiae, GI6320783, Length=397, Percent_Identity=35.264483627204, Blast_Score=201, Evalue=2e-52,
Organism=Drosophila melanogaster, GI20129913, Length=425, Percent_Identity=32.2352941176471, Blast_Score=196, Evalue=3e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 41974; Mature: 41842

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSVLAAYDALVAAGELRPDPEQRAAAVRLNQLQEELQAVPKRGSLLWRLAGRKPEALRG
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHCE
VYLWGAVGRGKSMLMDLFYDQLSIERKRRVHFHAFMLDVHARMREVRKSESGDPIPLVAE
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
ALAENVRCLAFDEMVVNNSADAMILSRLFTALIDRGVTMVATSNRPPKDLYKDGLNREHF
HHHCCCEEEEEHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHCCCCHHHH
LPFIALVEERLEVMGLNGPTDYRRDRLGDGARWFVPADEEASAALSAAFFRLTDYPPEDR
HHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCC
AHVPSLDLDVGGGRTLHVPKALKGVAVFSFKRLCAEARGASDYLAVARHFHTVIIVGIPR
CCCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCEEEEEECCC
MGPENRNEAARFVTLIDALYEYKVKLLASAAAMPDQLYVAGDGAFEFERTASRLAEMQSD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC
DYLALGHGQEDSPGNLPPA
CEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
TSVLAAYDALVAAGELRPDPEQRAAAVRLNQLQEELQAVPKRGSLLWRLAGRKPEALRG
CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHCE
VYLWGAVGRGKSMLMDLFYDQLSIERKRRVHFHAFMLDVHARMREVRKSESGDPIPLVAE
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
ALAENVRCLAFDEMVVNNSADAMILSRLFTALIDRGVTMVATSNRPPKDLYKDGLNREHF
HHHCCCEEEEEHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHCCCCHHHH
LPFIALVEERLEVMGLNGPTDYRRDRLGDGARWFVPADEEASAALSAAFFRLTDYPPEDR
HHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCC
AHVPSLDLDVGGGRTLHVPKALKGVAVFSFKRLCAEARGASDYLAVARHFHTVIIVGIPR
CCCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCEEEEEECCC
MGPENRNEAARFVTLIDALYEYKVKLLASAAAMPDQLYVAGDGAFEFERTASRLAEMQSD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC
DYLALGHGQEDSPGNLPPA
CEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]