| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487680
Identifier: 103487680
GI number: 103487680
Start: 2311194
End: 2312012
Strand: Reverse
Name: 103487680
Synonym: Sala_2199
Alternate gene names: NA
Gene position: 2312012-2311194 (Counterclockwise)
Preceding gene: 103487683
Following gene: 103487676
Centisome position: 69.11
GC content: 67.64
Gene sequence:
>819_bases ATGACCAGTTTCCCGCTCTCCCACCCCGACCGCGTCGATGGCGGTTTCCGGCCGCTCAAGGCGTGGCGCCATTTCCGTCG GCTCATCGCCGACAAGGAGGACACCGAACAGGTGTTCCACATCATCGAATCGCTGCGCGACAAGCGCTTCGGCAAGGCGG CACAGGCTTTCTTCGCGACGCCCGAGGGTCAGAAGCAGCTTGCCGAGCGACCCTGTCTGCCCGCGATGCTCGACGACCAT GACCGGCTGCGCCAGTTGCCCGAGGGCAGCGTCGGGCGCGCCTATGTCGACTTCATGGAACGCGAGGGGCTGACCGCGCA GGGCCTCGTCGACGAGTTTGACAAGTTCCGCCGTGGCCAGCCGCGCTACGACGACATGCTGGAGCTTTACGGCAACCGGC TGCGCGATACGCACGACCTGCTCCACATCCTCACCGGCTATGGCCGCGACGCGCTCGGCGAACAGTGCGTCCTCGCCTTT TCCTACAGCCAGACGCCGAGCTGGGGGACGCTGTTCATCGCCTGGGCGGGGGCCCGCGAAATCCGCAAGGGCTTCGGCCG CCGCTATCCCATCTATGGCGCGGTGCGCGAGGGCCAGCGTATCGGCCGCACCGCGCAGCAGATTGCGCATCAGGATATCG GGGCGCTGCTCGCCGAACCGCTCGACGCCGCGCGCCAGCGATTGGGGATCGCCGAACCGACCGTTTACAAACAGGTCCAC GCGATGATGCGCGCCGACGGCATCGACCCCTATGACCTCTTGGGGAAAAAGGCGGCCGAAGCCGCGGCGGCGCCCGTGCC GCTCGCGCAGGCGGCCTGA
Upstream 100 bases:
>100_bases TCGGCGATCGGATGATCGCGCCAGCGTTGTTTGCCAACTATTGACATTTATGTCAGTAATGCTAACTGGACGATGCAAGG ATTCGTCGCAGAGGTTCGCC
Downstream 100 bases:
>100_bases CCCGTCAGCCGCTGTCGCGCAGCCGCGCGATCAGCGCCTGCGCCGCCGCCGGGTTGCGGACCTTGGCTCCGGCGATGAAG AAGAGGAAGACGTCGCGGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MTSFPLSHPDRVDGGFRPLKAWRHFRRLIADKEDTEQVFHIIESLRDKRFGKAAQAFFATPEGQKQLAERPCLPAMLDDH DRLRQLPEGSVGRAYVDFMEREGLTAQGLVDEFDKFRRGQPRYDDMLELYGNRLRDTHDLLHILTGYGRDALGEQCVLAF SYSQTPSWGTLFIAWAGAREIRKGFGRRYPIYGAVREGQRIGRTAQQIAHQDIGALLAEPLDAARQRLGIAEPTVYKQVH AMMRADGIDPYDLLGKKAAEAAAAPVPLAQAA
Sequences:
>Translated_272_residues MTSFPLSHPDRVDGGFRPLKAWRHFRRLIADKEDTEQVFHIIESLRDKRFGKAAQAFFATPEGQKQLAERPCLPAMLDDH DRLRQLPEGSVGRAYVDFMEREGLTAQGLVDEFDKFRRGQPRYDDMLELYGNRLRDTHDLLHILTGYGRDALGEQCVLAF SYSQTPSWGTLFIAWAGAREIRKGFGRRYPIYGAVREGQRIGRTAQQIAHQDIGALLAEPLDAARQRLGIAEPTVYKQVH AMMRADGIDPYDLLGKKAAEAAAAPVPLAQAA >Mature_271_residues TSFPLSHPDRVDGGFRPLKAWRHFRRLIADKEDTEQVFHIIESLRDKRFGKAAQAFFATPEGQKQLAERPCLPAMLDDHD RLRQLPEGSVGRAYVDFMEREGLTAQGLVDEFDKFRRGQPRYDDMLELYGNRLRDTHDLLHILTGYGRDALGEQCVLAFS YSQTPSWGTLFIAWAGAREIRKGFGRRYPIYGAVREGQRIGRTAQQIAHQDIGALLAEPLDAARQRLGIAEPTVYKQVHA MMRADGIDPYDLLGKKAAEAAAAPVPLAQAA
Specific function: Unknown
COG id: COG5031
COG function: function code H; Uncharacterized protein involved in ubiquinone biosynthesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30619; Mature: 30488
Theoretical pI: Translated: 8.23; Mature: 8.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSFPLSHPDRVDGGFRPLKAWRHFRRLIADKEDTEQVFHIIESLRDKRFGKAAQAFFAT CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC PEGQKQLAERPCLPAMLDDHDRLRQLPEGSVGRAYVDFMEREGLTAQGLVDEFDKFRRGQ CCHHHHHHHCCCCCHHHCCHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCC PRYDDMLELYGNRLRDTHDLLHILTGYGRDALGEQCVLAFSYSQTPSWGTLFIAWAGARE CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECCCCCCCCEEEEEECCHHH IRKGFGRRYPIYGAVREGQRIGRTAQQIAHQDIGALLAEPLDAARQRLGIAEPTVYKQVH HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH AMMRADGIDPYDLLGKKAAEAAAAPVPLAQAA HHHHHCCCCHHHHHHHHHHHHHCCCCCHHCCC >Mature Secondary Structure TSFPLSHPDRVDGGFRPLKAWRHFRRLIADKEDTEQVFHIIESLRDKRFGKAAQAFFAT CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC PEGQKQLAERPCLPAMLDDHDRLRQLPEGSVGRAYVDFMEREGLTAQGLVDEFDKFRRGQ CCHHHHHHHCCCCCHHHCCHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCC PRYDDMLELYGNRLRDTHDLLHILTGYGRDALGEQCVLAFSYSQTPSWGTLFIAWAGARE CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECCCCCCCCEEEEEECCHHH IRKGFGRRYPIYGAVREGQRIGRTAQQIAHQDIGALLAEPLDAARQRLGIAEPTVYKQVH HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH AMMRADGIDPYDLLGKKAAEAAAAPVPLAQAA HHHHHCCCCHHHHHHHHHHHHHCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA