Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103487680

Identifier: 103487680

GI number: 103487680

Start: 2311194

End: 2312012

Strand: Reverse

Name: 103487680

Synonym: Sala_2199

Alternate gene names: NA

Gene position: 2312012-2311194 (Counterclockwise)

Preceding gene: 103487683

Following gene: 103487676

Centisome position: 69.11

GC content: 67.64

Gene sequence:

>819_bases
ATGACCAGTTTCCCGCTCTCCCACCCCGACCGCGTCGATGGCGGTTTCCGGCCGCTCAAGGCGTGGCGCCATTTCCGTCG
GCTCATCGCCGACAAGGAGGACACCGAACAGGTGTTCCACATCATCGAATCGCTGCGCGACAAGCGCTTCGGCAAGGCGG
CACAGGCTTTCTTCGCGACGCCCGAGGGTCAGAAGCAGCTTGCCGAGCGACCCTGTCTGCCCGCGATGCTCGACGACCAT
GACCGGCTGCGCCAGTTGCCCGAGGGCAGCGTCGGGCGCGCCTATGTCGACTTCATGGAACGCGAGGGGCTGACCGCGCA
GGGCCTCGTCGACGAGTTTGACAAGTTCCGCCGTGGCCAGCCGCGCTACGACGACATGCTGGAGCTTTACGGCAACCGGC
TGCGCGATACGCACGACCTGCTCCACATCCTCACCGGCTATGGCCGCGACGCGCTCGGCGAACAGTGCGTCCTCGCCTTT
TCCTACAGCCAGACGCCGAGCTGGGGGACGCTGTTCATCGCCTGGGCGGGGGCCCGCGAAATCCGCAAGGGCTTCGGCCG
CCGCTATCCCATCTATGGCGCGGTGCGCGAGGGCCAGCGTATCGGCCGCACCGCGCAGCAGATTGCGCATCAGGATATCG
GGGCGCTGCTCGCCGAACCGCTCGACGCCGCGCGCCAGCGATTGGGGATCGCCGAACCGACCGTTTACAAACAGGTCCAC
GCGATGATGCGCGCCGACGGCATCGACCCCTATGACCTCTTGGGGAAAAAGGCGGCCGAAGCCGCGGCGGCGCCCGTGCC
GCTCGCGCAGGCGGCCTGA

Upstream 100 bases:

>100_bases
TCGGCGATCGGATGATCGCGCCAGCGTTGTTTGCCAACTATTGACATTTATGTCAGTAATGCTAACTGGACGATGCAAGG
ATTCGTCGCAGAGGTTCGCC

Downstream 100 bases:

>100_bases
CCCGTCAGCCGCTGTCGCGCAGCCGCGCGATCAGCGCCTGCGCCGCCGCCGGGTTGCGGACCTTGGCTCCGGCGATGAAG
AAGAGGAAGACGTCGCGGTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MTSFPLSHPDRVDGGFRPLKAWRHFRRLIADKEDTEQVFHIIESLRDKRFGKAAQAFFATPEGQKQLAERPCLPAMLDDH
DRLRQLPEGSVGRAYVDFMEREGLTAQGLVDEFDKFRRGQPRYDDMLELYGNRLRDTHDLLHILTGYGRDALGEQCVLAF
SYSQTPSWGTLFIAWAGAREIRKGFGRRYPIYGAVREGQRIGRTAQQIAHQDIGALLAEPLDAARQRLGIAEPTVYKQVH
AMMRADGIDPYDLLGKKAAEAAAAPVPLAQAA

Sequences:

>Translated_272_residues
MTSFPLSHPDRVDGGFRPLKAWRHFRRLIADKEDTEQVFHIIESLRDKRFGKAAQAFFATPEGQKQLAERPCLPAMLDDH
DRLRQLPEGSVGRAYVDFMEREGLTAQGLVDEFDKFRRGQPRYDDMLELYGNRLRDTHDLLHILTGYGRDALGEQCVLAF
SYSQTPSWGTLFIAWAGAREIRKGFGRRYPIYGAVREGQRIGRTAQQIAHQDIGALLAEPLDAARQRLGIAEPTVYKQVH
AMMRADGIDPYDLLGKKAAEAAAAPVPLAQAA
>Mature_271_residues
TSFPLSHPDRVDGGFRPLKAWRHFRRLIADKEDTEQVFHIIESLRDKRFGKAAQAFFATPEGQKQLAERPCLPAMLDDHD
RLRQLPEGSVGRAYVDFMEREGLTAQGLVDEFDKFRRGQPRYDDMLELYGNRLRDTHDLLHILTGYGRDALGEQCVLAFS
YSQTPSWGTLFIAWAGAREIRKGFGRRYPIYGAVREGQRIGRTAQQIAHQDIGALLAEPLDAARQRLGIAEPTVYKQVHA
MMRADGIDPYDLLGKKAAEAAAAPVPLAQAA

Specific function: Unknown

COG id: COG5031

COG function: function code H; Uncharacterized protein involved in ubiquinone biosynthesis

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30619; Mature: 30488

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCCCHHHHHHHHHHHHHCCCCCHHCCC
>Mature Secondary Structure 
TSFPLSHPDRVDGGFRPLKAWRHFRRLIADKEDTEQVFHIIESLRDKRFGKAAQAFFAT
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PEGQKQLAERPCLPAMLDDHDRLRQLPEGSVGRAYVDFMEREGLTAQGLVDEFDKFRRGQ
CCHHHHHHHCCCCCHHHCCHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
PRYDDMLELYGNRLRDTHDLLHILTGYGRDALGEQCVLAFSYSQTPSWGTLFIAWAGARE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECCCCCCCCEEEEEECCHHH
IRKGFGRRYPIYGAVREGQRIGRTAQQIAHQDIGALLAEPLDAARQRLGIAEPTVYKQVH
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
AMMRADGIDPYDLLGKKAAEAAAAPVPLAQAA
HHHHHCCCCHHHHHHHHHHHHHCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA