Click here to switch to the map view.

The map label for this gene is xseB [H]

Identifier: 103487676

GI number: 103487676

Start: 2306752

End: 2307015

Strand: Reverse

Name: xseB [H]

Synonym: Sala_2195

Alternate gene names: 103487676

Gene position: 2307015-2306752 (Counterclockwise)

Preceding gene: 103487680

Following gene: 103487675

Centisome position: 68.97

GC content: 70.83

Gene sequence:

>264_bases
ATGACGGACACCCCCGCAACCGCTGCCCTTCCCGATATCGCCGCCCTGTCGTTCGAGGCCGCGATGGGCGAGCTCGAAAC
GATCGTCCGGCGGCTCGAAAGCGGCGACGTCAGCCTCGAGGAATCGGTCAGCCTCTATGAACGCGGCCATGCGCTGCGCA
GCCATTGCGAGGCGCGGCTCGCCGCGGCGCAGGCGCGGATCGAGCAGGTCAGCCTGGCCGCCGATGGTCGGCCGGCGGGA
ACCACGCCCTTCGGCGAGGGCTGA

Upstream 100 bases:

>100_bases
GGCTGCAACACGAGCAGGGACGACCGGATCGACAGCGATCGTCGGGGGCGACGACTCGCCGCCCTTGACCGAGAGGGGGC
GAAGAGGCCAAAGCAGCGGT

Downstream 100 bases:

>100_bases
GCGGGCGTGGCGTCGGTGGGCGGCGACAATGCGCGCGGCGCCGAGTTGCTCCGCGCGACCCAGGCCGAAGTCGCCGAGGG
GATCGACGCGCTGTTCGACC

Product: exodeoxyribonuclease VII, small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 87; Mature: 86

Protein sequence:

>87_residues
MTDTPATAALPDIAALSFEAAMGELETIVRRLESGDVSLEESVSLYERGHALRSHCEARLAAAQARIEQVSLAADGRPAG
TTPFGEG

Sequences:

>Translated_87_residues
MTDTPATAALPDIAALSFEAAMGELETIVRRLESGDVSLEESVSLYERGHALRSHCEARLAAAQARIEQVSLAADGRPAG
TTPFGEG
>Mature_86_residues
TDTPATAALPDIAALSFEAAMGELETIVRRLESGDVSLEESVSLYERGHALRSHCEARLAAAQARIEQVSLAADGRPAGT
TPFGEG

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

Organism=Escherichia coli, GI1786624, Length=68, Percent_Identity=47.0588235294118, Blast_Score=60, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761
- ProDom:   PD028235 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 9112; Mature: 8981

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTPATAALPDIAALSFEAAMGELETIVRRLESGDVSLEESVSLYERGHALRSHCEARL
CCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
AAAQARIEQVSLAADGRPAGTTPFGEG
HHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TDTPATAALPDIAALSFEAAMGELETIVRRLESGDVSLEESVSLYERGHALRSHCEARL
CCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
AAAQARIEQVSLAADGRPAGTTPFGEG
HHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA