| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is purL [H]
Identifier: 103487678
GI number: 103487678
Start: 2308085
End: 2310328
Strand: Direct
Name: purL [H]
Synonym: Sala_2197
Alternate gene names: 103487678
Gene position: 2308085-2310328 (Clockwise)
Preceding gene: 103487677
Following gene: 103487679
Centisome position: 69.0
GC content: 65.95
Gene sequence:
>2244_bases ATGACTCAGCCAGCGCCCGCCATCACCCCCGAAATCGTCGCCGAGCACGGCCTTGCTCCGCAAGAATATGAGCGCGTCCT CGCCGCGCTCGGGCGCGAGCCGAACCTGGTCGAACTGGGTATCTTCTCGGTCATGTGGTCGGAGCATTGCAGCTATAAAA GCTCGCGCATCCATCTGAAGAAGCTGCCGACCGAGGCGCCGTGGGTGATCTGCGGCCCCGGCGAGAATGCCGGGGTGATC GACATCGGCGAAGGACCGGACGGCAAGAAGCTCGCCGCGATCTTCAAGATGGAGAGTCACAACCACCCAAGCTACATCGA ACCCTATCAGGGGGCGGCCACGGGAGTCGGCGGGATCCTGCGCGACGTCTTCACCATGGGCGCGCGCCCGGTCGCGAACC TCAACGCGCTGCGCTTCGGGCGGCCCGACCATCCGAAGATGCGGCACCTGATCGCGGGGGTCGTCCACGGCATCGGCGGC TATGGCAATTGCGTCGGCGTGCCGACCGTCGGCGGCGAGGTCAATTTCCATGCCGCCTATGACGGCAATATCCTCGTCAA CGCGATGACCGTCGGCGTCGCCGAACAGGACAGGATCTTCTATTCGGCCGCATCGGGCGTCGGCAATCCGATCGTCTATG TCGGCTCGAAAACCGGCCGCGACGGCATCCACGGCGCGACGATGGCGAGTGCCGATTTCGGCGAGGATGCGGAGGAAAAG CGCCCGACGGTGCAGGTCGGCGACCCCTTTACCGAAAAGCTGCTGATCGAGGCGTGCCTCGAACTGATGGCGTCGGACGC GATCGTCGCGATCCAGGACATGGGCGCCGCGGGCCTGACCAGTTCGTCGGTCGAAATGGCGTCGAAGGGCGGCGTCGGCA TCCACCTCAGGATGGACGATGTGCCGCAGCGTGAAACCGGCATGACGGCCTATGAAATGATGCTGTCGGAAAGCCAGGAA CGCATGTTGATGGTGCTGAAGCCCGGCAAGGAAGAGTTTGCGAAGGCGATCTTCCACAAATGGGAACTCGACTTCGCGGT CATCGGCACCGTCACCGACACCGGCCGCATGGTGCTCGAACATCATGGGCAAATCGTCTGCGACATTCCGCTCGCCCCGC TCGCCGACGATGCGCCCCTTTACGACCGTCCGCATGTGCCCACGCCGAAGCAGCCCGAACTGTCCGACGTCCCGGAGACC AAGGATGTCGCGGCCGACCTCAAGGCCTTGATGGGCACCCCCGATATCGCCAGCCGCCGCTGGATCTGGGAGCAATATGA CAGCCAGGTCGGCGCCGACACGGTGCAGACCGGCGGCGACGCCGCGCTGGTCCGCATCCACGGCACCAACCGCGCGCTCG CGATGAGCACCGACTGCACCCCGCGCTATTGCTACGCCGATCCGGTCGAGGGCGGCAAGCAGGCGGTCGCCGAAACGTGG CGCAACATCAGCGCGGTCGGCGCGACGCCGCTCGCGATCACCAACTGCCTCAATTTCGCCAACCCGCAGCGCCCCGAAAT CATGGGCCAGATCGTCGGCTGCCTCGACGGCATGGCACAGGCGTGCCGCGCGCTCGACTATCCGATCGTGTCGGGCAACG TCAGCCTCTACAACGAGTCCAAGGCGACGGGTGGCGGCAGCGCGATCCTGCCGACCCCCGCGATCGGCGGCGTCGGCGTG ATCGAGGATCTGGGCAAAGCGGTCGGCATCGGCTTCAAGCGCACCGGCGACATCGTCCTCGCGGTCGGCGAACGCATGGG CCACCTCGGCCAGTCGATCTGGCTGCGCGAAATCCACGGCCGCGAAGAAGGCCCGCCGCCGCCCGTCGACCTCAAGGCCG AGAAGCGCACCGGCGATTTCATCCGCCAAAGCATCAACGCCGGCTGGATCACCGCGTGCCACGACGTCTCCGACGGCGGC GTCGCCGTGGCGCTCGCCGAAATGGCCTTGAAGTCGAACATCGGCGTGCTGGTGAGCGAGGAACAGCCGTTCGGGGTGGC GGAGAGCTTCTTCGGCGAGGATCAGGGGCTGTATCTCGTCACCGTCTGCGACACCTGCCTTGCCGACTTCCTCGACGCCG CGAATCGCGCCGACGTGCCCGTCGATCCGCTCGGGCGCACGATCAAGGATCGCATCGTGTTCGAGCTGCCCGACAGCGAT CATCAGGTGACGCTCGCCGAACTGCGCGAAGCGCATGAAGGCTTCTTCCCCAAGCTGATGGGCGCCGACGCGGCGCTGGC GTAA
Upstream 100 bases:
>100_bases GCTCGCTTCGCGCTGATCGCGTCTCCGACGGCAGGCCCCTGTCGCCCAAAAGGCGATATGGGGTCTGTTCGTTTCGCCCG CGCGCCGCTAAAGGCGCGCC
Downstream 100 bases:
>100_bases CAACCCCACCTCGTCATTCCGGCGAAGGCCGGAATCTCGCCGGTGCGGCATAACGCGACGATGAGATCCCGGCCTCCGCC GGGATGACGATATAAGGAGG
Product: phosphoribosylformylglycinamidine synthase II
Products: NA
Alternate protein names: Phosphoribosylformylglycinamidine synthase II; FGAM synthase II [H]
Number of amino acids: Translated: 747; Mature: 746
Protein sequence:
>747_residues MTQPAPAITPEIVAEHGLAPQEYERVLAALGREPNLVELGIFSVMWSEHCSYKSSRIHLKKLPTEAPWVICGPGENAGVI DIGEGPDGKKLAAIFKMESHNHPSYIEPYQGAATGVGGILRDVFTMGARPVANLNALRFGRPDHPKMRHLIAGVVHGIGG YGNCVGVPTVGGEVNFHAAYDGNILVNAMTVGVAEQDRIFYSAASGVGNPIVYVGSKTGRDGIHGATMASADFGEDAEEK RPTVQVGDPFTEKLLIEACLELMASDAIVAIQDMGAAGLTSSSVEMASKGGVGIHLRMDDVPQRETGMTAYEMMLSESQE RMLMVLKPGKEEFAKAIFHKWELDFAVIGTVTDTGRMVLEHHGQIVCDIPLAPLADDAPLYDRPHVPTPKQPELSDVPET KDVAADLKALMGTPDIASRRWIWEQYDSQVGADTVQTGGDAALVRIHGTNRALAMSTDCTPRYCYADPVEGGKQAVAETW RNISAVGATPLAITNCLNFANPQRPEIMGQIVGCLDGMAQACRALDYPIVSGNVSLYNESKATGGGSAILPTPAIGGVGV IEDLGKAVGIGFKRTGDIVLAVGERMGHLGQSIWLREIHGREEGPPPPVDLKAEKRTGDFIRQSINAGWITACHDVSDGG VAVALAEMALKSNIGVLVSEEQPFGVAESFFGEDQGLYLVTVCDTCLADFLDAANRADVPVDPLGRTIKDRIVFELPDSD HQVTLAELREAHEGFFPKLMGADAALA
Sequences:
>Translated_747_residues MTQPAPAITPEIVAEHGLAPQEYERVLAALGREPNLVELGIFSVMWSEHCSYKSSRIHLKKLPTEAPWVICGPGENAGVI DIGEGPDGKKLAAIFKMESHNHPSYIEPYQGAATGVGGILRDVFTMGARPVANLNALRFGRPDHPKMRHLIAGVVHGIGG YGNCVGVPTVGGEVNFHAAYDGNILVNAMTVGVAEQDRIFYSAASGVGNPIVYVGSKTGRDGIHGATMASADFGEDAEEK RPTVQVGDPFTEKLLIEACLELMASDAIVAIQDMGAAGLTSSSVEMASKGGVGIHLRMDDVPQRETGMTAYEMMLSESQE RMLMVLKPGKEEFAKAIFHKWELDFAVIGTVTDTGRMVLEHHGQIVCDIPLAPLADDAPLYDRPHVPTPKQPELSDVPET KDVAADLKALMGTPDIASRRWIWEQYDSQVGADTVQTGGDAALVRIHGTNRALAMSTDCTPRYCYADPVEGGKQAVAETW RNISAVGATPLAITNCLNFANPQRPEIMGQIVGCLDGMAQACRALDYPIVSGNVSLYNESKATGGGSAILPTPAIGGVGV IEDLGKAVGIGFKRTGDIVLAVGERMGHLGQSIWLREIHGREEGPPPPVDLKAEKRTGDFIRQSINAGWITACHDVSDGG VAVALAEMALKSNIGVLVSEEQPFGVAESFFGEDQGLYLVTVCDTCLADFLDAANRADVPVDPLGRTIKDRIVFELPDSD HQVTLAELREAHEGFFPKLMGADAALA >Mature_746_residues TQPAPAITPEIVAEHGLAPQEYERVLAALGREPNLVELGIFSVMWSEHCSYKSSRIHLKKLPTEAPWVICGPGENAGVID IGEGPDGKKLAAIFKMESHNHPSYIEPYQGAATGVGGILRDVFTMGARPVANLNALRFGRPDHPKMRHLIAGVVHGIGGY GNCVGVPTVGGEVNFHAAYDGNILVNAMTVGVAEQDRIFYSAASGVGNPIVYVGSKTGRDGIHGATMASADFGEDAEEKR PTVQVGDPFTEKLLIEACLELMASDAIVAIQDMGAAGLTSSSVEMASKGGVGIHLRMDDVPQRETGMTAYEMMLSESQER MLMVLKPGKEEFAKAIFHKWELDFAVIGTVTDTGRMVLEHHGQIVCDIPLAPLADDAPLYDRPHVPTPKQPELSDVPETK DVAADLKALMGTPDIASRRWIWEQYDSQVGADTVQTGGDAALVRIHGTNRALAMSTDCTPRYCYADPVEGGKQAVAETWR NISAVGATPLAITNCLNFANPQRPEIMGQIVGCLDGMAQACRALDYPIVSGNVSLYNESKATGGGSAILPTPAIGGVGVI EDLGKAVGIGFKRTGDIVLAVGERMGHLGQSIWLREIHGREEGPPPPVDLKAEKRTGDFIRQSINAGWITACHDVSDGGV AVALAEMALKSNIGVLVSEEQPFGVAESFFGEDQGLYLVTVCDTCLADFLDAANRADVPVDPLGRTIKDRIVFELPDSDH QVTLAELREAHEGFFPKLMGADAALA
Specific function: Unknown
COG id: COG0046
COG function: function code F; Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the FGAMS family [H]
Homologues:
Organism=Escherichia coli, GI48994899, Length=721, Percent_Identity=24.2718446601942, Blast_Score=112, Evalue=7e-26, Organism=Caenorhabditis elegans, GI17553022, Length=672, Percent_Identity=22.0238095238095, Blast_Score=85, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6321498, Length=735, Percent_Identity=22.5850340136054, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI24582111, Length=730, Percent_Identity=25.0684931506849, Blast_Score=108, Evalue=2e-23, Organism=Drosophila melanogaster, GI24582109, Length=730, Percent_Identity=25.0684931506849, Blast_Score=108, Evalue=2e-23, Organism=Drosophila melanogaster, GI17137292, Length=730, Percent_Identity=25.0684931506849, Blast_Score=108, Evalue=2e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000728 - InterPro: IPR010918 - InterPro: IPR010074 - InterPro: IPR016188 [H]
Pfam domain/function: PF00586 AIRS; PF02769 AIRS_C [H]
EC number: =6.3.5.3 [H]
Molecular weight: Translated: 79640; Mature: 79508
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQPAPAITPEIVAEHGLAPQEYERVLAALGREPNLVELGIFSVMWSEHCSYKSSRIHLK CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCCCEEEE KLPTEAPWVICGPGENAGVIDIGEGPDGKKLAAIFKMESHNHPSYIEPYQGAATGVGGIL ECCCCCCEEEECCCCCCCEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHH RDVFTMGARPVANLNALRFGRPDHPKMRHLIAGVVHGIGGYGNCVGVPTVGGEVNFHAAY HHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCEEEEEEE DGNILVNAMTVGVAEQDRIFYSAASGVGNPIVYVGSKTGRDGIHGATMASADFGEDAEEK CCCEEEEEEEECCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCEECCCCCCCCHHHC RPTVQVGDPFTEKLLIEACLELMASDAIVAIQDMGAAGLTSSSVEMASKGGVGIHLRMDD CCEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHCCCCCEEEEEECC VPQRETGMTAYEMMLSESQERMLMVLKPGKEEFAKAIFHKWELDFAVIGTVTDTGRMVLE CCCCHHCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHH HHGQIVCDIPLAPLADDAPLYDRPHVPTPKQPELSDVPETKDVAADLKALMGTPDIASRR HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH WIWEQYDSQVGADTVQTGGDAALVRIHGTNRALAMSTDCTPRYCYADPVEGGKQAVAETW HHHHHHHHHCCCCHHCCCCCEEEEEEECCCCEEEEECCCCCCEEECCCCCCHHHHHHHHH RNISAVGATPLAITNCLNFANPQRPEIMGQIVGCLDGMAQACRALDYPIVSGNVSLYNES HCCHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEEEECC KATGGGSAILPTPAIGGVGVIEDLGKAVGIGFKRTGDIVLAVGERMGHLGQSIWLREIHG CCCCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCC REEGPPPPVDLKAEKRTGDFIRQSINAGWITACHDVSDGGVAVALAEMALKSNIGVLVSE CCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEC EQPFGVAESFFGEDQGLYLVTVCDTCLADFLDAANRADVPVDPLGRTIKDRIVFELPDSD CCCCCHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCEEEECCCCC HQVTLAELREAHEGFFPKLMGADAALA CEEEHHHHHHHHCCCCHHHHCCCCCCC >Mature Secondary Structure TQPAPAITPEIVAEHGLAPQEYERVLAALGREPNLVELGIFSVMWSEHCSYKSSRIHLK CCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCCCEEEE KLPTEAPWVICGPGENAGVIDIGEGPDGKKLAAIFKMESHNHPSYIEPYQGAATGVGGIL ECCCCCCEEEECCCCCCCEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHH RDVFTMGARPVANLNALRFGRPDHPKMRHLIAGVVHGIGGYGNCVGVPTVGGEVNFHAAY HHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCEEEEEEE DGNILVNAMTVGVAEQDRIFYSAASGVGNPIVYVGSKTGRDGIHGATMASADFGEDAEEK CCCEEEEEEEECCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCEECCCCCCCCHHHC RPTVQVGDPFTEKLLIEACLELMASDAIVAIQDMGAAGLTSSSVEMASKGGVGIHLRMDD CCEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHCCCCCEEEEEECC VPQRETGMTAYEMMLSESQERMLMVLKPGKEEFAKAIFHKWELDFAVIGTVTDTGRMVLE CCCCHHCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHH HHGQIVCDIPLAPLADDAPLYDRPHVPTPKQPELSDVPETKDVAADLKALMGTPDIASRR HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH WIWEQYDSQVGADTVQTGGDAALVRIHGTNRALAMSTDCTPRYCYADPVEGGKQAVAETW HHHHHHHHHCCCCHHCCCCCEEEEEEECCCCEEEEECCCCCCEEECCCCCCHHHHHHHHH RNISAVGATPLAITNCLNFANPQRPEIMGQIVGCLDGMAQACRALDYPIVSGNVSLYNES HCCHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEEEECC KATGGGSAILPTPAIGGVGVIEDLGKAVGIGFKRTGDIVLAVGERMGHLGQSIWLREIHG CCCCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCC REEGPPPPVDLKAEKRTGDFIRQSINAGWITACHDVSDGGVAVALAEMALKSNIGVLVSE CCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEC EQPFGVAESFFGEDQGLYLVTVCDTCLADFLDAANRADVPVDPLGRTIKDRIVFELPDSD CCCCCHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCEEEECCCCC HQVTLAELREAHEGFFPKLMGADAALA CEEEHHHHHHHHCCCCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA