| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487677
Identifier: 103487677
GI number: 103487677
Start: 2307398
End: 2308000
Strand: Direct
Name: 103487677
Synonym: Sala_2196
Alternate gene names: NA
Gene position: 2307398-2308000 (Clockwise)
Preceding gene: 103487671
Following gene: 103487678
Centisome position: 68.98
GC content: 63.02
Gene sequence:
>603_bases ATGTCCACTTCCGGTCGGTTTCAGACCTTCCCCGCTTTCCGTTCGGGTCGGGCGAAGTCGAAACACAAATCGACGCCGCG CCACGTCGGGGGCATCTCGACTTCGCTCAATGCGAACGGATCTATATGCTGGCAGGTTCGCAACCGGTCGGATGCCACCC TCCAGATAATTCGCGCAGAGGCCCCTCCGCGCAATCGCGATTCCGCTTTTTGCAATTGCCTCGGCGCACCGCGCGAGCCA TGTTGCACCGCACAAGAAGAGAGGGGCTCGAAGGCAAGTTTTGTTCCACCAACAAGGACTTGCACCATGAAAACCATCAT CCTCCCGGCCCTCGGCCTGTTTGCGCTGACGCCCTCCGCCGCCATGGCGAAGGACGAAGTGGTGAAGCGCTTCGAGCACG ATGGCGCCATCTACAGCTACACCGTCACCCAGGTCGGCGACACGCGCGTGCTCAAGGGGATTGAAGAGCGCACCGGCAAA CCCTTCACGCTCCGCGTCGGCGAGCACCGCGTCCGCGGCACCGTCGGCTCGCAGCAGGTGAGCTTCCCGCTCCGCGAGGT CGAGCCGCTGAAAGCCGACAAGACCACGCTCGCTTCGCGCTGA
Upstream 100 bases:
>100_bases AAGGCTGGCACAGCCGGGCCATGTAGGACAGCGTTTTTTGGTGGCCGGTCTGGGCTGGGGAGCGGACGTAGCCCTCTCCC CTTCAGGGGAGAGAGCCACT
Downstream 100 bases:
>100_bases TCGCGTCTCCGACGGCAGGCCCCTGTCGCCCAAAAGGCGATATGGGGTCTGTTCGTTTCGCCCGCGCGCCGCTAAAGGCG CGCCATGACTCAGCCAGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 200; Mature: 199
Protein sequence:
>200_residues MSTSGRFQTFPAFRSGRAKSKHKSTPRHVGGISTSLNANGSICWQVRNRSDATLQIIRAEAPPRNRDSAFCNCLGAPREP CCTAQEERGSKASFVPPTRTCTMKTIILPALGLFALTPSAAMAKDEVVKRFEHDGAIYSYTVTQVGDTRVLKGIEERTGK PFTLRVGEHRVRGTVGSQQVSFPLREVEPLKADKTTLASR
Sequences:
>Translated_200_residues MSTSGRFQTFPAFRSGRAKSKHKSTPRHVGGISTSLNANGSICWQVRNRSDATLQIIRAEAPPRNRDSAFCNCLGAPREP CCTAQEERGSKASFVPPTRTCTMKTIILPALGLFALTPSAAMAKDEVVKRFEHDGAIYSYTVTQVGDTRVLKGIEERTGK PFTLRVGEHRVRGTVGSQQVSFPLREVEPLKADKTTLASR >Mature_199_residues STSGRFQTFPAFRSGRAKSKHKSTPRHVGGISTSLNANGSICWQVRNRSDATLQIIRAEAPPRNRDSAFCNCLGAPREPC CTAQEERGSKASFVPPTRTCTMKTIILPALGLFALTPSAAMAKDEVVKRFEHDGAIYSYTVTQVGDTRVLKGIEERTGKP FTLRVGEHRVRGTVGSQQVSFPLREVEPLKADKTTLASR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21879; Mature: 21748
Theoretical pI: Translated: 10.73; Mature: 10.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTSGRFQTFPAFRSGRAKSKHKSTPRHVGGISTSLNANGSICWQVRNRSDATLQIIRAE CCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEECCCCCCEEEEEECC APPRNRDSAFCNCLGAPREPCCTAQEERGSKASFVPPTRTCTMKTIILPALGLFALTPSA CCCCCCCCHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH AMAKDEVVKRFEHDGAIYSYTVTQVGDTRVLKGIEERTGKPFTLRVGEHRVRGTVGSQQV HHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCEEECCCCCCCEE SFPLREVEPLKADKTTLASR CCCHHHCCCCCCCCHHCCCC >Mature Secondary Structure STSGRFQTFPAFRSGRAKSKHKSTPRHVGGISTSLNANGSICWQVRNRSDATLQIIRAE CCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEECCCCCCEEEEEECC APPRNRDSAFCNCLGAPREPCCTAQEERGSKASFVPPTRTCTMKTIILPALGLFALTPSA CCCCCCCCHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH AMAKDEVVKRFEHDGAIYSYTVTQVGDTRVLKGIEERTGKPFTLRVGEHRVRGTVGSQQV HHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCEEECCCCCCCEE SFPLREVEPLKADKTTLASR CCCHHHCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA