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The map label for this gene is phyR [H]

Identifier: 103487667

GI number: 103487667

Start: 2296991

End: 2297785

Strand: Reverse

Name: phyR [H]

Synonym: Sala_2186

Alternate gene names: 103487667

Gene position: 2297785-2296991 (Counterclockwise)

Preceding gene: 103487668

Following gene: 103487666

Centisome position: 68.69

GC content: 66.29

Gene sequence:

>795_bases
ATGTCTTTGGGTCAGTCGATCGCGCCGCATCTTCCTTATCTGCGGCGCTATGGCCGGTCCGTTTCGGGGAACCAGCAGAG
CGGCGACGCGCTTGTGGCCCGGATGCTTGAAACGCTTGTCGCGAACCCAGACGCTATCGATCCCGACGCCGATCTGCGCA
TCCAGCTTTACCGGATGGTGCATGACAATTTCGGTCTGATGGCGCAGCAGGCGCCCCCCGACGGCGAGCGGGCGCGCGGC
GACATGGCGATCGCCGACGCGCGGCTGCGCCGCATCCCGTCGCTCGCGCGGCAGGCCTTGCTGCTTACGGCGGTCGAGGG
CTTCGGCATCGAGGACGCGGGCCGGATCATCGGCCGCGACGCCGAAGCGGTGCGCGCGCTGATCCACGACGCGACCGACG
AGATCGAGCGCCAGACGCGCGCGCGCATCCTGATCATCGAGGATGAACCGATCATCGCGATGGACATCGAAATGATCGTC
CGCGACCTTGGCCATGATGTCGTCGCGGTCGCGACGACCCACGCCGAAGCGGTCGAAGACGCGCAGAAGCACCAGCCCGG
CCTTGTGCTCGCCGACATCCAGCTTGCCGACAATAGTTCGGGGATCGAGGCGGTGCAGGAAATCCTGTCGGACGTGAAGC
TGCCCGTGATTTTCATCACCGCCTTCCCCGAACGGCTGCTCACCGGCGACCGGCCCGAACCGGCCTTCCTGCTGACCAAG
CCCTATCAGCCCGCGACGCTGCGCGCGGCGATCTCGCAGGTGCTGTTCTTCGACGAAAGCACGGTTCCGGCCTGA

Upstream 100 bases:

>100_bases
TGTGTTGGATTATATCGAGCGCGAATGGGGGCGGCGCTGCAAGCCTGTCCGTGTTCCGTACAATCTGGCCAGCATTTGCG
CGGTTTTCAGGAGGTAGTCT

Downstream 100 bases:

>100_bases
AGCCATCGTCGCCCCCGCGAAGGCGGGAGCCGCCGTCGGTTGACGCAGCGCGGCCGCGCACGCACTGCCAACGGCCCCCG
CCTTCGCGGGGGCGACGGTG

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MSLGQSIAPHLPYLRRYGRSVSGNQQSGDALVARMLETLVANPDAIDPDADLRIQLYRMVHDNFGLMAQQAPPDGERARG
DMAIADARLRRIPSLARQALLLTAVEGFGIEDAGRIIGRDAEAVRALIHDATDEIERQTRARILIIEDEPIIAMDIEMIV
RDLGHDVVAVATTHAEAVEDAQKHQPGLVLADIQLADNSSGIEAVQEILSDVKLPVIFITAFPERLLTGDRPEPAFLLTK
PYQPATLRAAISQVLFFDESTVPA

Sequences:

>Translated_264_residues
MSLGQSIAPHLPYLRRYGRSVSGNQQSGDALVARMLETLVANPDAIDPDADLRIQLYRMVHDNFGLMAQQAPPDGERARG
DMAIADARLRRIPSLARQALLLTAVEGFGIEDAGRIIGRDAEAVRALIHDATDEIERQTRARILIIEDEPIIAMDIEMIV
RDLGHDVVAVATTHAEAVEDAQKHQPGLVLADIQLADNSSGIEAVQEILSDVKLPVIFITAFPERLLTGDRPEPAFLLTK
PYQPATLRAAISQVLFFDESTVPA
>Mature_263_residues
SLGQSIAPHLPYLRRYGRSVSGNQQSGDALVARMLETLVANPDAIDPDADLRIQLYRMVHDNFGLMAQQAPPDGERARGD
MAIADARLRRIPSLARQALLLTAVEGFGIEDAGRIIGRDAEAVRALIHDATDEIERQTRARILIIEDEPIIAMDIEMIVR
DLGHDVVAVATTHAEAVEDAQKHQPGLVLADIQLADNSSGIEAVQEILSDVKLPVIFITAFPERLLTGDRPEPAFLLTKP
YQPATLRAAISQVLFFDESTVPA

Specific function: Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However it is not known whether this regulation is direct or indirect. Also induces several de

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR014605
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28850; Mature: 28719

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLGQSIAPHLPYLRRYGRSVSGNQQSGDALVARMLETLVANPDAIDPDADLRIQLYRMV
CCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
HDNFGLMAQQAPPDGERARGDMAIADARLRRIPSLARQALLLTAVEGFGIEDAGRIIGRD
HHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCC
AEAVRALIHDATDEIERQTRARILIIEDEPIIAMDIEMIVRDLGHDVVAVATTHAEAVED
HHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEHHHHHHHHHCCCCEEEEEHHHHHHHHH
AQKHQPGLVLADIQLADNSSGIEAVQEILSDVKLPVIFITAFPERLLTGDRPEPAFLLTK
HHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCCCCCEEEEC
PYQPATLRAAISQVLFFDESTVPA
CCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SLGQSIAPHLPYLRRYGRSVSGNQQSGDALVARMLETLVANPDAIDPDADLRIQLYRMV
CCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
HDNFGLMAQQAPPDGERARGDMAIADARLRRIPSLARQALLLTAVEGFGIEDAGRIIGRD
HHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCC
AEAVRALIHDATDEIERQTRARILIIEDEPIIAMDIEMIVRDLGHDVVAVATTHAEAVED
HHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEHHHHHHHHHCCCCEEEEEHHHHHHHHH
AQKHQPGLVLADIQLADNSSGIEAVQEILSDVKLPVIFITAFPERLLTGDRPEPAFLLTK
HHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCCCCCEEEEC
PYQPATLRAAISQVLFFDESTVPA
CCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA