| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487664
Identifier: 103487664
GI number: 103487664
Start: 2292879
End: 2293670
Strand: Reverse
Name: 103487664
Synonym: Sala_2183
Alternate gene names: NA
Gene position: 2293670-2292879 (Counterclockwise)
Preceding gene: 103487665
Following gene: 103487663
Centisome position: 68.57
GC content: 68.94
Gene sequence:
>792_bases ATGGCCACCCTCGGCGAAGCCGCGCGCGCGGTGCTGCTGACTGCGGACCCACACGCCAAGCGCCGCGCGGCGCGCGGTCT GGCGCGCGCCTGGCGGCGCGGCGAGCTTGCGCATCGCTGTGACGTCGCGATGCCAGACCGGCCCGCACGGCCCGCGCGGC CCGAACTGCTCGCGCCCGCGCAGATGCCGCGCCGCCGCAAGGGCGGGTCGGAGCGTGGCCGGATCGCGATGCTCCACGCG CTCGCGCATATCGAGTTTGTCGCGATCGACCTGGCGGTCGATCTGGTCGGGCGCTTCGGCGGCGAGTTTCCGCGCGGATT CGTCGACGACTGGATCGGCGTCGCCGCCGACGAGGCGATGCACTTTGCGCTGCTCGACCGGCGGCTGCGCCAGCTCGGCA GCTTCTATGGCGATTTGCCCGCGCACGCGGGATTGTGGGAAGCGGCCGAAGCGACGCGCGACGACGCGCTCGCGCGGCTC GCGATCGTGCCGATGGTATTGGAAGCGCGCGGGCTCGACGTCACCCCGGCGACGGTCGACCGCTTCCGCGCCGCGGGCGA CGAGGTGTCGGCAAAGATTTTATCGCGTATTTACAACGATGAAATCCGCCATGTGCGCGCGGGCACCGTCTGGTTCGGGC AAAAGTGCGACGAACTGGGATTCAACGCCGTCGAAACGTGGCACGCGCTCGTGAAATCGCGGTTTCGGGGGGCTTTGAAG CCGCCTTTCAACGACTCGGCGCGTGCTCGCGCCGGTTTAACGCAAGAATACTACGCCGTTATTGCTTCGTAA
Upstream 100 bases:
>100_bases CCTTCCTGTTCGGCCGCGACGGCAAGCTCGCGAAAGAGTGGCGCAAGGTGCGCGTGAAGGGTCATGCCGATGCGGTGCTG GAGGCGGCGAAGGCACTTTG
Downstream 100 bases:
>100_bases GGAGCAGGACAGCACACAGGCTTCCGCGGGGGATGAGCAATCATCCAGAGCAGGAATACCGGCACCAAGGCCCAGTTTCG GGCTTTGGCGACATGGCAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MATLGEAARAVLLTADPHAKRRAARGLARAWRRGELAHRCDVAMPDRPARPARPELLAPAQMPRRRKGGSERGRIAMLHA LAHIEFVAIDLAVDLVGRFGGEFPRGFVDDWIGVAADEAMHFALLDRRLRQLGSFYGDLPAHAGLWEAAEATRDDALARL AIVPMVLEARGLDVTPATVDRFRAAGDEVSAKILSRIYNDEIRHVRAGTVWFGQKCDELGFNAVETWHALVKSRFRGALK PPFNDSARARAGLTQEYYAVIAS
Sequences:
>Translated_263_residues MATLGEAARAVLLTADPHAKRRAARGLARAWRRGELAHRCDVAMPDRPARPARPELLAPAQMPRRRKGGSERGRIAMLHA LAHIEFVAIDLAVDLVGRFGGEFPRGFVDDWIGVAADEAMHFALLDRRLRQLGSFYGDLPAHAGLWEAAEATRDDALARL AIVPMVLEARGLDVTPATVDRFRAAGDEVSAKILSRIYNDEIRHVRAGTVWFGQKCDELGFNAVETWHALVKSRFRGALK PPFNDSARARAGLTQEYYAVIAS >Mature_262_residues ATLGEAARAVLLTADPHAKRRAARGLARAWRRGELAHRCDVAMPDRPARPARPELLAPAQMPRRRKGGSERGRIAMLHAL AHIEFVAIDLAVDLVGRFGGEFPRGFVDDWIGVAADEAMHFALLDRRLRQLGSFYGDLPAHAGLWEAAEATRDDALARLA IVPMVLEARGLDVTPATVDRFRAAGDEVSAKILSRIYNDEIRHVRAGTVWFGQKCDELGFNAVETWHALVKSRFRGALKP PFNDSARARAGLTQEYYAVIAS
Specific function: Unknown
COG id: COG2833
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007402 - InterPro: IPR009078 - InterPro: IPR011197 [H]
Pfam domain/function: PF04305 DUF455 [H]
EC number: NA
Molecular weight: Translated: 28964; Mature: 28832
Theoretical pI: Translated: 10.09; Mature: 10.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATLGEAARAVLLTADPHAKRRAARGLARAWRRGELAHRCDVAMPDRPARPARPELLAPA CCCHHHHHCEEEEECCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCC QMPRRRKGGSERGRIAMLHALAHIEFVAIDLAVDLVGRFGGEFPRGFVDDWIGVAADEAM CCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH HFALLDRRLRQLGSFYGDLPAHAGLWEAAEATRDDALARLAIVPMVLEARGLDVTPATVD HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH RFRAAGDEVSAKILSRIYNDEIRHVRAGTVWFGQKCDELGFNAVETWHALVKSRFRGALK HHHHCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHCCHHHHHHHHHHHHHHCCCCC PPFNDSARARAGLTQEYYAVIAS CCCCCCHHHHHCCCHHHHHHHCC >Mature Secondary Structure ATLGEAARAVLLTADPHAKRRAARGLARAWRRGELAHRCDVAMPDRPARPARPELLAPA CCHHHHHCEEEEECCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCC QMPRRRKGGSERGRIAMLHALAHIEFVAIDLAVDLVGRFGGEFPRGFVDDWIGVAADEAM CCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH HFALLDRRLRQLGSFYGDLPAHAGLWEAAEATRDDALARLAIVPMVLEARGLDVTPATVD HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH RFRAAGDEVSAKILSRIYNDEIRHVRAGTVWFGQKCDELGFNAVETWHALVKSRFRGALK HHHHCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHCCHHHHHHHHHHHHHHCCCCC PPFNDSARARAGLTQEYYAVIAS CCCCCCHHHHHCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]