Click here to switch to the map view.

The map label for this gene is yebA [H]

Identifier: 103487663

GI number: 103487663

Start: 2292062

End: 2292763

Strand: Reverse

Name: yebA [H]

Synonym: Sala_2182

Alternate gene names: 103487663

Gene position: 2292763-2292062 (Counterclockwise)

Preceding gene: 103487664

Following gene: 103487662

Centisome position: 68.54

GC content: 63.53

Gene sequence:

>702_bases
TTGAGTAACATTCTACTGGCGCAAAAGTTGCACCACATCGCAATTTTCTGCGTGGCAGCCTGTTTCGCCACGGCCACGTC
GGCCGTCCACGCCGCCGAAACCAGCGCCGACGCTGGTATCATCGTTCCCGACGAACCCGATGACGACAGCTTCACCGCCG
GCGTTCCGGCGACCGGCGAAGACAGCGAGGCGCGCGCAATCTTTCAGGCGTGGAAGCGCCTCGACACCGGCCTGACCGCC
TCGATCGGCGTCGCGGTGCCCTCGCGCCGCCCGATCGACCAGATGTCGCTCTCCTCGTCTTACGGGATGCGCGTCCATCC
GATCACCGGCAGGGTCGCGCGCCACAATGGCATCGACATCCCGGCGCCGCACGGCACCCCGATCTACGCGACCGCCGACG
GCATCGTCGGCCGCGCCCAGCGGCTGGGCGGCTATGGCAATTATGTCGAAATCGAACATGGCAATGCGATCCAGACGCGC
TACGGCCATATGTCGTCCTATGTCGTGCGTCCCGGACAACAGGTCAAAAAGGGCGAAATCATCGGTTATGTCGGCTCGAC
GGGCCGCTCGACCGGCAATCATCTCCATTATGAAGTCCGCATCGAAGGCGCGCCGGTCAATCCGATGCCCTTCGTGCGGT
CGGACCAGATGGCGATCGCCGCGATCAGCGGAAAAAATGTCGCGATGGGCGGTCCTGAATAG

Upstream 100 bases:

>100_bases
ACAGGCTTCCGCGGGGGATGAGCAATCATCCAGAGCAGGAATACCGGCACCAAGGCCCAGTTTCGGGCTTTGGCGACATG
GCAAACGCGGGGTCGTTGTT

Downstream 100 bases:

>100_bases
GAATAAAACGAGCCTTTCCGGGTCGGAGAGGAGGGGGCGTTCCGCGGCTGATGCCGGGACGCCCTTTTCTTTTGGGCGCG
CATCCCTATCTTGCCGCCAT

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MSNILLAQKLHHIAIFCVAACFATATSAVHAAETSADAGIIVPDEPDDDSFTAGVPATGEDSEARAIFQAWKRLDTGLTA
SIGVAVPSRRPIDQMSLSSSYGMRVHPITGRVARHNGIDIPAPHGTPIYATADGIVGRAQRLGGYGNYVEIEHGNAIQTR
YGHMSSYVVRPGQQVKKGEIIGYVGSTGRSTGNHLHYEVRIEGAPVNPMPFVRSDQMAIAAISGKNVAMGGPE

Sequences:

>Translated_233_residues
MSNILLAQKLHHIAIFCVAACFATATSAVHAAETSADAGIIVPDEPDDDSFTAGVPATGEDSEARAIFQAWKRLDTGLTA
SIGVAVPSRRPIDQMSLSSSYGMRVHPITGRVARHNGIDIPAPHGTPIYATADGIVGRAQRLGGYGNYVEIEHGNAIQTR
YGHMSSYVVRPGQQVKKGEIIGYVGSTGRSTGNHLHYEVRIEGAPVNPMPFVRSDQMAIAAISGKNVAMGGPE
>Mature_232_residues
SNILLAQKLHHIAIFCVAACFATATSAVHAAETSADAGIIVPDEPDDDSFTAGVPATGEDSEARAIFQAWKRLDTGLTAS
IGVAVPSRRPIDQMSLSSSYGMRVHPITGRVARHNGIDIPAPHGTPIYATADGIVGRAQRLGGYGNYVEIEHGNAIQTRY
GHMSSYVVRPGQQVKKGEIIGYVGSTGRSTGNHLHYEVRIEGAPVNPMPFVRSDQMAIAAISGKNVAMGGPE

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=117, Percent_Identity=49.5726495726496, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1789099, Length=99, Percent_Identity=41.4141414141414, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI87082297, Length=99, Percent_Identity=41.4141414141414, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082174, Length=117, Percent_Identity=35.8974358974359, Blast_Score=71, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 24602; Mature: 24471

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNILLAQKLHHIAIFCVAACFATATSAVHAAETSADAGIIVPDEPDDDSFTAGVPATGE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEECCCCCCCC
DSEARAIFQAWKRLDTGLTASIGVAVPSRRPIDQMSLSSSYGMRVHPITGRVARHNGIDI
CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCCCCEEEECCCCEEECCCCCCC
PAPHGTPIYATADGIVGRAQRLGGYGNYVEIEHGNAIQTRYGHMSSYVVRPGQQVKKGEI
CCCCCCEEEEECCCHHHHHHHCCCCCCEEEEECCCEEEEHHCCCCCEEECCCCCCCCCEE
IGYVGSTGRSTGNHLHYEVRIEGAPVNPMPFVRSDQMAIAAISGKNVAMGGPE
EEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCEEECCCCC
>Mature Secondary Structure 
SNILLAQKLHHIAIFCVAACFATATSAVHAAETSADAGIIVPDEPDDDSFTAGVPATGE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEECCCCCCCC
DSEARAIFQAWKRLDTGLTASIGVAVPSRRPIDQMSLSSSYGMRVHPITGRVARHNGIDI
CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCCCCEEEECCCCEEECCCCCCC
PAPHGTPIYATADGIVGRAQRLGGYGNYVEIEHGNAIQTRYGHMSSYVVRPGQQVKKGEI
CCCCCCEEEEECCCHHHHHHHCCCCCCEEEEECCCEEEEHHCCCCCEEECCCCCCCCCEE
IGYVGSTGRSTGNHLHYEVRIEGAPVNPMPFVRSDQMAIAAISGKNVAMGGPE
EEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]