Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103487655

Identifier: 103487655

GI number: 103487655

Start: 2284387

End: 2285361

Strand: Reverse

Name: 103487655

Synonym: Sala_2174

Alternate gene names: NA

Gene position: 2285361-2284387 (Counterclockwise)

Preceding gene: 103487656

Following gene: 103487654

Centisome position: 68.32

GC content: 64.92

Gene sequence:

>975_bases
ATGGCCAGCGTCGCCCTCCTTTCGAATCCTCGCTCGACGGGCAATCGCTCGCAATTGCCGCGGGTTCGCGAGTTTTGCGC
GGCGCACCCCGACATTTTTCACTATGAGGTGGAGGATGTCGAACAGATCGGCGAGGCGATCCGCACGATCGCGATGGTGT
CCCCGCGCGTCGTCGCGATCAACGGCGGCGACGGCACGGTGCAGGCGGCGCTGACCGAGCTTTATTCGGGCGGCCATTTC
GGCGGCTCGCCGCCACCGGTCGCGGTGCTGCCCAACGGCAAGACCAATTTGATCGCGTTCGACCTCGGCGCCGAGGGCGA
TCCGATCAAGGCGCTCCAGCGCGTGCTCGACCTTGTCCAGGCGGGTGAGCTTGGCGAGCATGTGATCGAACGTCAGCTCA
TCGCGCTCGACGGCGGCGGCAACACGCGGCCGGTGCTCGGCATGTTCCTTGGCGGCGCCTATCTCGCCGACGTCATGCTC
TATTGCCGCAACCGCATCTATCCGCTCGGCCTGCCCAACGGTGTCTCGCATTTTCTTGCCGCGATTCTCGGGCTGTTCGC
GATCATCTTTGGCATCGGCGGCGGGCGCTTGCCGCCCAAGCCCGAACCGATGACCGTGTCGCTCGTCCGCCAAGGCGAGT
TCAAGGGCAAGTTCTCGCTGCTGATCGTCACGACGCTCGAAAAACTGCTGCTCAGCATCCGCACGAGCGACAGCCATGGC
AGCAACGGCCATATGAAGCTGCTCGCGACCGACAGCAATGTCGGCGCATTGTTCCGGATGCTCGGTGCGACCTGGCGCGG
CACGCTCGGGCAAAAGCAGCTCGCCGGCGTGCATTTCCAGCAGGGCGACGAGATACGGATCGAGGGAGCGCGGTCGAATG
TGATCCTCGACGGCGAGATTTTCGAGGCCAGGAATGGCGCGCCGATCATCCTCACCTCGACGCAGCCGGTCCCCTTCCTG
CGCCTCGCCGCATAG

Upstream 100 bases:

>100_bases
ACATCTTCAACCTTGGCAAGCCGAGTTACAAGAAGACCGCCTTTTCGGTCGGCGATGCGCCGCGGACCATCTCTATCACG
ATGAAATATATGTAACCCCG

Downstream 100 bases:

>100_bases
GCTATGCCTCTTTGGCGTGATCCCGCTCGCTTCGAGCGAAGTCGAGATGCCCCGAAGAACAGCGCCGTTTCGAGGAGTGT
CTCGACGTCGCTCGACGTCA

Product: diacylglycerol kinase, catalytic region

Products: NA

Alternate protein names: Sphingosine Kinase

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MASVALLSNPRSTGNRSQLPRVREFCAAHPDIFHYEVEDVEQIGEAIRTIAMVSPRVVAINGGDGTVQAALTELYSGGHF
GGSPPPVAVLPNGKTNLIAFDLGAEGDPIKALQRVLDLVQAGELGEHVIERQLIALDGGGNTRPVLGMFLGGAYLADVML
YCRNRIYPLGLPNGVSHFLAAILGLFAIIFGIGGGRLPPKPEPMTVSLVRQGEFKGKFSLLIVTTLEKLLLSIRTSDSHG
SNGHMKLLATDSNVGALFRMLGATWRGTLGQKQLAGVHFQQGDEIRIEGARSNVILDGEIFEARNGAPIILTSTQPVPFL
RLAA

Sequences:

>Translated_324_residues
MASVALLSNPRSTGNRSQLPRVREFCAAHPDIFHYEVEDVEQIGEAIRTIAMVSPRVVAINGGDGTVQAALTELYSGGHF
GGSPPPVAVLPNGKTNLIAFDLGAEGDPIKALQRVLDLVQAGELGEHVIERQLIALDGGGNTRPVLGMFLGGAYLADVML
YCRNRIYPLGLPNGVSHFLAAILGLFAIIFGIGGGRLPPKPEPMTVSLVRQGEFKGKFSLLIVTTLEKLLLSIRTSDSHG
SNGHMKLLATDSNVGALFRMLGATWRGTLGQKQLAGVHFQQGDEIRIEGARSNVILDGEIFEARNGAPIILTSTQPVPFL
RLAA
>Mature_323_residues
ASVALLSNPRSTGNRSQLPRVREFCAAHPDIFHYEVEDVEQIGEAIRTIAMVSPRVVAINGGDGTVQAALTELYSGGHFG
GSPPPVAVLPNGKTNLIAFDLGAEGDPIKALQRVLDLVQAGELGEHVIERQLIALDGGGNTRPVLGMFLGGAYLADVMLY
CRNRIYPLGLPNGVSHFLAAILGLFAIIFGIGGGRLPPKPEPMTVSLVRQGEFKGKFSLLIVTTLEKLLLSIRTSDSHGS
NGHMKLLATDSNVGALFRMLGATWRGTLGQKQLAGVHFQQGDEIRIEGARSNVILDGEIFEARNGAPIILTSTQPVPFLR
LAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34529; Mature: 34398

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASVALLSNPRSTGNRSQLPRVREFCAAHPDIFHYEVEDVEQIGEAIRTIAMVSPRVVAI
CCCEEEECCCCCCCCHHCCHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEE
NGGDGTVQAALTELYSGGHFGGSPPPVAVLPNGKTNLIAFDLGAEGDPIKALQRVLDLVQ
ECCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHH
AGELGEHVIERQLIALDGGGNTRPVLGMFLGGAYLADVMLYCRNRIYPLGLPNGVSHFLA
CCHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHH
AILGLFAIIFGIGGGRLPPKPEPMTVSLVRQGEFKGKFSLLIVTTLEKLLLSIRTSDSHG
HHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCEEEEEHHHHHHHHHHHHCCCCCCC
SNGHMKLLATDSNVGALFRMLGATWRGTLGQKQLAGVHFQQGDEIRIEGARSNVILDGEI
CCCEEEEEEECCCHHHHHHHHHHHHCCCCCCHHHCCCEECCCCEEEEECCCCCEEECCEE
FEARNGAPIILTSTQPVPFLRLAA
EECCCCCEEEEECCCCCCEEEECC
>Mature Secondary Structure 
ASVALLSNPRSTGNRSQLPRVREFCAAHPDIFHYEVEDVEQIGEAIRTIAMVSPRVVAI
CCEEEECCCCCCCCHHCCHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEE
NGGDGTVQAALTELYSGGHFGGSPPPVAVLPNGKTNLIAFDLGAEGDPIKALQRVLDLVQ
ECCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHH
AGELGEHVIERQLIALDGGGNTRPVLGMFLGGAYLADVMLYCRNRIYPLGLPNGVSHFLA
CCHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHH
AILGLFAIIFGIGGGRLPPKPEPMTVSLVRQGEFKGKFSLLIVTTLEKLLLSIRTSDSHG
HHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCEEEEEHHHHHHHHHHHHCCCCCCC
SNGHMKLLATDSNVGALFRMLGATWRGTLGQKQLAGVHFQQGDEIRIEGARSNVILDGEI
CCCEEEEEEECCCHHHHHHHHHHHHCCCCCCHHHCCCEECCCCEEEEECCCCCEEECCEE
FEARNGAPIILTSTQPVPFLRLAA
EECCCCCEEEEECCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA