| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487654
Identifier: 103487654
GI number: 103487654
Start: 2283383
End: 2284246
Strand: Reverse
Name: 103487654
Synonym: Sala_2173
Alternate gene names: NA
Gene position: 2284246-2283383 (Counterclockwise)
Preceding gene: 103487655
Following gene: 103487650
Centisome position: 68.28
GC content: 68.63
Gene sequence:
>864_bases ATGGCCGACAGCCTGACCGATCTCGTCCGCGAAGAGCTGGCGATCCCCGTCGATCCGCGCGTCACCGCGATGGCCGCCGC GATGGCCGCGCGCTATCCCGGCAGCGCGCGCGCGGTGCTCTTTTACGGCAGCTGCCTTCGGATGCGCGAGCTCGACGGGT TGATGCTCGATTTCTATCTGATCGTCTCCGACTATGGCGACGCCTATCCCAGGCGCTGGATGGCGGCGGCGAACCGGCTG ATTCCGCCCAATGTCTTTCCGTTCGAACATGGCGGGCTGATCGCCAAATATGCGGTGCTCAGCGAAGCCGATTTCCACCG CCTGAACGGTGCGGAGACGCGCAATGTGTCGGTATGGGCGCGCTTTGCGCAGCCCGCGCGCCTTGTCTGGGCGGTCGACG ATAGCGCGCGCGATCGCGCCGTCGCCGCGGTGGCGCGCGCCGCGCCTGCCTTGCTCGCGGCCGCGGGGCGGCAGGCGGGC GAAGCGCCACTCGACTGGTGGCGCCGTGCCTTTCGGCTCACTTACTCGGTCGAACTGCGCGCCGAGCGCAGCGGGCGTGC GCAGTCGGTGGTCGATGCCGATCCCGCCCGTTACGAACGCTTCAGCGCCCCGGCAATCGCCGCCATTCCGGCCGGAGCAA AGAAGGGGGGCTGGGCGCGGCGACGGATCGAGGGCAAGCTGCTCAGCGTCGCTCGGCTCGCCAAGGCCAGCCTGACCTAT GCCGGCGGGATCGATTATCTGGCGTGGAAGATCAATCGCCACGCTGGCACGAAGATCGAGATCAAGCCCTGGCAGCGCCG CTGGCCGCTTGTTGCCGCGCTGACGCTGGTGCCGCGGCTGATCAAGGGCGGTGCGATCCGGTAA
Upstream 100 bases:
>100_bases GTCGAGATGCCCCGAAGAACAGCGCCGTTTCGAGGAGTGTCTCGACGTCGCTCGACGTCAATGGATTTCAGGGCTTGGGT TTTTCGTAAGAAGAGTATTT
Downstream 100 bases:
>100_bases AGACCGACCGGGCTGTAAAACCCCGCGCCCCTGCGAAGGCGGGGGCCCATCTCCTGCCGGTTCGATTTTGCGCCGTCCGG TGATGGATTCCCGCCTTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 287; Mature: 286
Protein sequence:
>287_residues MADSLTDLVREELAIPVDPRVTAMAAAMAARYPGSARAVLFYGSCLRMRELDGLMLDFYLIVSDYGDAYPRRWMAAANRL IPPNVFPFEHGGLIAKYAVLSEADFHRLNGAETRNVSVWARFAQPARLVWAVDDSARDRAVAAVARAAPALLAAAGRQAG EAPLDWWRRAFRLTYSVELRAERSGRAQSVVDADPARYERFSAPAIAAIPAGAKKGGWARRRIEGKLLSVARLAKASLTY AGGIDYLAWKINRHAGTKIEIKPWQRRWPLVAALTLVPRLIKGGAIR
Sequences:
>Translated_287_residues MADSLTDLVREELAIPVDPRVTAMAAAMAARYPGSARAVLFYGSCLRMRELDGLMLDFYLIVSDYGDAYPRRWMAAANRL IPPNVFPFEHGGLIAKYAVLSEADFHRLNGAETRNVSVWARFAQPARLVWAVDDSARDRAVAAVARAAPALLAAAGRQAG EAPLDWWRRAFRLTYSVELRAERSGRAQSVVDADPARYERFSAPAIAAIPAGAKKGGWARRRIEGKLLSVARLAKASLTY AGGIDYLAWKINRHAGTKIEIKPWQRRWPLVAALTLVPRLIKGGAIR >Mature_286_residues ADSLTDLVREELAIPVDPRVTAMAAAMAARYPGSARAVLFYGSCLRMRELDGLMLDFYLIVSDYGDAYPRRWMAAANRLI PPNVFPFEHGGLIAKYAVLSEADFHRLNGAETRNVSVWARFAQPARLVWAVDDSARDRAVAAVARAAPALLAAAGRQAGE APLDWWRRAFRLTYSVELRAERSGRAQSVVDADPARYERFSAPAIAAIPAGAKKGGWARRRIEGKLLSVARLAKASLTYA GGIDYLAWKINRHAGTKIEIKPWQRRWPLVAALTLVPRLIKGGAIR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31609; Mature: 31478
Theoretical pI: Translated: 10.85; Mature: 10.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADSLTDLVREELAIPVDPRVTAMAAAMAARYPGSARAVLFYGSCLRMRELDGLMLDFYL CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCHHHHHHH IVSDYGDAYPRRWMAAANRLIPPNVFPFEHGGLIAKYAVLSEADFHRLNGAETRNVSVWA EEHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHCCCCHHHCCCCCCCCCEEEE RFAQPARLVWAVDDSARDRAVAAVARAAPALLAAAGRQAGEAPLDWWRRAFRLTYSVELR ECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEEEEEEE AERSGRAQSVVDADPARYERFSAPAIAAIPAGAKKGGWARRRIEGKLLSVARLAKASLTY ECCCCCCCHHCCCCHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC AGGIDYLAWKINRHAGTKIEIKPWQRRWPLVAALTLVPRLIKGGAIR CCCCCEEEEEEECCCCCEEEECCHHHHCHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure ADSLTDLVREELAIPVDPRVTAMAAAMAARYPGSARAVLFYGSCLRMRELDGLMLDFYL CCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCHHHHHHH IVSDYGDAYPRRWMAAANRLIPPNVFPFEHGGLIAKYAVLSEADFHRLNGAETRNVSVWA EEHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHCCCCHHHCCCCCCCCCEEEE RFAQPARLVWAVDDSARDRAVAAVARAAPALLAAAGRQAGEAPLDWWRRAFRLTYSVELR ECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEEEEEEE AERSGRAQSVVDADPARYERFSAPAIAAIPAGAKKGGWARRRIEGKLLSVARLAKASLTY ECCCCCCCHHCCCCHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC AGGIDYLAWKINRHAGTKIEIKPWQRRWPLVAALTLVPRLIKGGAIR CCCCCEEEEEEECCCCCEEEECCHHHHCHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA