Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103487654

Identifier: 103487654

GI number: 103487654

Start: 2283383

End: 2284246

Strand: Reverse

Name: 103487654

Synonym: Sala_2173

Alternate gene names: NA

Gene position: 2284246-2283383 (Counterclockwise)

Preceding gene: 103487655

Following gene: 103487650

Centisome position: 68.28

GC content: 68.63

Gene sequence:

>864_bases
ATGGCCGACAGCCTGACCGATCTCGTCCGCGAAGAGCTGGCGATCCCCGTCGATCCGCGCGTCACCGCGATGGCCGCCGC
GATGGCCGCGCGCTATCCCGGCAGCGCGCGCGCGGTGCTCTTTTACGGCAGCTGCCTTCGGATGCGCGAGCTCGACGGGT
TGATGCTCGATTTCTATCTGATCGTCTCCGACTATGGCGACGCCTATCCCAGGCGCTGGATGGCGGCGGCGAACCGGCTG
ATTCCGCCCAATGTCTTTCCGTTCGAACATGGCGGGCTGATCGCCAAATATGCGGTGCTCAGCGAAGCCGATTTCCACCG
CCTGAACGGTGCGGAGACGCGCAATGTGTCGGTATGGGCGCGCTTTGCGCAGCCCGCGCGCCTTGTCTGGGCGGTCGACG
ATAGCGCGCGCGATCGCGCCGTCGCCGCGGTGGCGCGCGCCGCGCCTGCCTTGCTCGCGGCCGCGGGGCGGCAGGCGGGC
GAAGCGCCACTCGACTGGTGGCGCCGTGCCTTTCGGCTCACTTACTCGGTCGAACTGCGCGCCGAGCGCAGCGGGCGTGC
GCAGTCGGTGGTCGATGCCGATCCCGCCCGTTACGAACGCTTCAGCGCCCCGGCAATCGCCGCCATTCCGGCCGGAGCAA
AGAAGGGGGGCTGGGCGCGGCGACGGATCGAGGGCAAGCTGCTCAGCGTCGCTCGGCTCGCCAAGGCCAGCCTGACCTAT
GCCGGCGGGATCGATTATCTGGCGTGGAAGATCAATCGCCACGCTGGCACGAAGATCGAGATCAAGCCCTGGCAGCGCCG
CTGGCCGCTTGTTGCCGCGCTGACGCTGGTGCCGCGGCTGATCAAGGGCGGTGCGATCCGGTAA

Upstream 100 bases:

>100_bases
GTCGAGATGCCCCGAAGAACAGCGCCGTTTCGAGGAGTGTCTCGACGTCGCTCGACGTCAATGGATTTCAGGGCTTGGGT
TTTTCGTAAGAAGAGTATTT

Downstream 100 bases:

>100_bases
AGACCGACCGGGCTGTAAAACCCCGCGCCCCTGCGAAGGCGGGGGCCCATCTCCTGCCGGTTCGATTTTGCGCCGTCCGG
TGATGGATTCCCGCCTTCGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MADSLTDLVREELAIPVDPRVTAMAAAMAARYPGSARAVLFYGSCLRMRELDGLMLDFYLIVSDYGDAYPRRWMAAANRL
IPPNVFPFEHGGLIAKYAVLSEADFHRLNGAETRNVSVWARFAQPARLVWAVDDSARDRAVAAVARAAPALLAAAGRQAG
EAPLDWWRRAFRLTYSVELRAERSGRAQSVVDADPARYERFSAPAIAAIPAGAKKGGWARRRIEGKLLSVARLAKASLTY
AGGIDYLAWKINRHAGTKIEIKPWQRRWPLVAALTLVPRLIKGGAIR

Sequences:

>Translated_287_residues
MADSLTDLVREELAIPVDPRVTAMAAAMAARYPGSARAVLFYGSCLRMRELDGLMLDFYLIVSDYGDAYPRRWMAAANRL
IPPNVFPFEHGGLIAKYAVLSEADFHRLNGAETRNVSVWARFAQPARLVWAVDDSARDRAVAAVARAAPALLAAAGRQAG
EAPLDWWRRAFRLTYSVELRAERSGRAQSVVDADPARYERFSAPAIAAIPAGAKKGGWARRRIEGKLLSVARLAKASLTY
AGGIDYLAWKINRHAGTKIEIKPWQRRWPLVAALTLVPRLIKGGAIR
>Mature_286_residues
ADSLTDLVREELAIPVDPRVTAMAAAMAARYPGSARAVLFYGSCLRMRELDGLMLDFYLIVSDYGDAYPRRWMAAANRLI
PPNVFPFEHGGLIAKYAVLSEADFHRLNGAETRNVSVWARFAQPARLVWAVDDSARDRAVAAVARAAPALLAAAGRQAGE
APLDWWRRAFRLTYSVELRAERSGRAQSVVDADPARYERFSAPAIAAIPAGAKKGGWARRRIEGKLLSVARLAKASLTYA
GGIDYLAWKINRHAGTKIEIKPWQRRWPLVAALTLVPRLIKGGAIR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31609; Mature: 31478

Theoretical pI: Translated: 10.85; Mature: 10.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADSLTDLVREELAIPVDPRVTAMAAAMAARYPGSARAVLFYGSCLRMRELDGLMLDFYL
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCHHHHHHH
IVSDYGDAYPRRWMAAANRLIPPNVFPFEHGGLIAKYAVLSEADFHRLNGAETRNVSVWA
EEHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHCCCCHHHCCCCCCCCCEEEE
RFAQPARLVWAVDDSARDRAVAAVARAAPALLAAAGRQAGEAPLDWWRRAFRLTYSVELR
ECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEEEEEEE
AERSGRAQSVVDADPARYERFSAPAIAAIPAGAKKGGWARRRIEGKLLSVARLAKASLTY
ECCCCCCCHHCCCCHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
AGGIDYLAWKINRHAGTKIEIKPWQRRWPLVAALTLVPRLIKGGAIR
CCCCCEEEEEEECCCCCEEEECCHHHHCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ADSLTDLVREELAIPVDPRVTAMAAAMAARYPGSARAVLFYGSCLRMRELDGLMLDFYL
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCHHHHHHH
IVSDYGDAYPRRWMAAANRLIPPNVFPFEHGGLIAKYAVLSEADFHRLNGAETRNVSVWA
EEHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHCCCCHHHCCCCCCCCCEEEE
RFAQPARLVWAVDDSARDRAVAAVARAAPALLAAAGRQAGEAPLDWWRRAFRLTYSVELR
ECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEEEEEEE
AERSGRAQSVVDADPARYERFSAPAIAAIPAGAKKGGWARRRIEGKLLSVARLAKASLTY
ECCCCCCCHHCCCCHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
AGGIDYLAWKINRHAGTKIEIKPWQRRWPLVAALTLVPRLIKGGAIR
CCCCCEEEEEEECCCCCEEEECCHHHHCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA