| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487656
Identifier: 103487656
GI number: 103487656
Start: 2285367
End: 2285840
Strand: Reverse
Name: 103487656
Synonym: Sala_2175
Alternate gene names: NA
Gene position: 2285840-2285367 (Counterclockwise)
Preceding gene: 103487659
Following gene: 103487655
Centisome position: 68.33
GC content: 61.81
Gene sequence:
>474_bases ATGTCGAAATTTGTATCGGGCCTGCTTGCTGCCGCCCTGTTGACCGCGGGGTCGACGGCGGAGGCCATGGGCCGGGTCAT TCCGAACGATCTGTCCAACTGCCGCAGTGGGCCGTCGACGCTTGTCCAGATCGACGGGATCAAGACGTCGAGCGGCAAGA TCCGCGTGCAAAGCTATCGCGGAACGTCGGCCGACTGGCTGGAAAAGGGTCGCTGGCTCGCGCGTATCGAAGTGCCGGCG CGTGCCGGGTCGATGACCGTCTGCGTGCCGCTGCCCGAAGCCGGCGTGTACGGCATCGCGGTGCGCCACGACGTCAACGG CAATGGCAAGACCGACATCAGCAAGGATGGCGGCGGCATGTCGAACAATCCCGGCATCAACATCTTCAACCTTGGCAAGC CGAGTTACAAGAAGACCGCCTTTTCGGTCGGCGATGCGCCGCGGACCATCTCTATCACGATGAAATATATGTAA
Upstream 100 bases:
>100_bases CAAATGTTTCCGATATGCCGATTCAAGGGCGACAGGGACCCATGTCGGCGTGCGCCGTGCGTGCGCGGACGTGGCTATAG CCTCTGGAGGTTTTGAGGTC
Downstream 100 bases:
>100_bases CCCCGATGGCCAGCGTCGCCCTCCTTTCGAATCCTCGCTCGACGGGCAATCGCTCGCAATTGCCGCGGGTTCGCGAGTTT TGCGCGGCGCACCCCGACAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 157; Mature: 156
Protein sequence:
>157_residues MSKFVSGLLAAALLTAGSTAEAMGRVIPNDLSNCRSGPSTLVQIDGIKTSSGKIRVQSYRGTSADWLEKGRWLARIEVPA RAGSMTVCVPLPEAGVYGIAVRHDVNGNGKTDISKDGGGMSNNPGINIFNLGKPSYKKTAFSVGDAPRTISITMKYM
Sequences:
>Translated_157_residues MSKFVSGLLAAALLTAGSTAEAMGRVIPNDLSNCRSGPSTLVQIDGIKTSSGKIRVQSYRGTSADWLEKGRWLARIEVPA RAGSMTVCVPLPEAGVYGIAVRHDVNGNGKTDISKDGGGMSNNPGINIFNLGKPSYKKTAFSVGDAPRTISITMKYM >Mature_156_residues SKFVSGLLAAALLTAGSTAEAMGRVIPNDLSNCRSGPSTLVQIDGIKTSSGKIRVQSYRGTSADWLEKGRWLARIEVPAR AGSMTVCVPLPEAGVYGIAVRHDVNGNGKTDISKDGGGMSNNPGINIFNLGKPSYKKTAFSVGDAPRTISITMKYM
Specific function: Unknown
COG id: COG4704
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16521; Mature: 16390
Theoretical pI: Translated: 10.32; Mature: 10.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKFVSGLLAAALLTAGSTAEAMGRVIPNDLSNCRSGPSTLVQIDGIKTSSGKIRVQSYR CHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHCCCCCEEEEECCEEECCCEEEEEEEC GTSADWLEKGRWLARIEVPARAGSMTVCVPLPEAGVYGIAVRHDVNGNGKTDISKDGGGM CCCHHHHHCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCC SNNPGINIFNLGKPSYKKTAFSVGDAPRTISITMKYM CCCCCEEEEECCCCCCCCEEEECCCCCEEEEEEEEEC >Mature Secondary Structure SKFVSGLLAAALLTAGSTAEAMGRVIPNDLSNCRSGPSTLVQIDGIKTSSGKIRVQSYR HHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHCCCCCEEEEECCEEECCCEEEEEEEC GTSADWLEKGRWLARIEVPARAGSMTVCVPLPEAGVYGIAVRHDVNGNGKTDISKDGGGM CCCHHHHHCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCC SNNPGINIFNLGKPSYKKTAFSVGDAPRTISITMKYM CCCCCEEEEECCCCCCCCEEEECCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA