| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487626
Identifier: 103487626
GI number: 103487626
Start: 2252474
End: 2253040
Strand: Reverse
Name: 103487626
Synonym: Sala_2145
Alternate gene names: NA
Gene position: 2253040-2252474 (Counterclockwise)
Preceding gene: 103487627
Following gene: 103487624
Centisome position: 67.35
GC content: 64.9
Gene sequence:
>567_bases ATGCGAACACTGCTTTACGCCATCGGGCCGATGCTCTTCGATTCGCTCGGAATTATCGTCTTTGCCGTGCTGCTTGCGCT CGATGCGGGCATCGTTCCCGCGACGGTTGCGGGAACGGTGGTAGCGGTGGCGGTGGTCGGATATGAGCTGGCGCGTGGGC GTGCGGTGGCGGCGCTGCAATGGATCAGCCTCGCCTCGGTGCTGTTCACCGCGGCGGCGACCTTGTTCACCGGCGATCCG CGCTTCGTGATGGCGAAGCCGACGATCGTTTATCTGATCGTCGGGACCGTGATGCTGCGCAAGGGCTGGCTCAGCCGCTA TATCCCGCCCGCGCAGATGGCGATCGTCGGCGACGTGATGGACCGGTTCGGCATGATCTGGTCGGCGCTGATGTTCGCGA GCGCCGCGCTCAACCTGATCGTCGCGCTTTTCTTCACCGCCTGGTGGCCGCTGTTCATCGGCGTCTTTCCACTGGCGTCG AAGTTCGGTCTGTTCGCGGTCCACATCGCCGTGGTGCATCATGTCACGCAGGCACGGCTGCGCCGCGGCGCGGCGGTTGC CGAGTAG
Upstream 100 bases:
>100_bases CGCCAGCCAGCAATGTTAACGACGTCAATTTCTGCTTGACCCCGCGCAGCCGGGCTGCAATGTTTACGACGGTAACATTG AGTCGCGAAAAGGATGTGCC
Downstream 100 bases:
>100_bases CGCTTTCGTCATGGCGAGCGCAGCGAAGCAATCTCCAGCCATCGAACTGGAGATTGCTTCGCTGCGCTGGCAATGACGTT GTCTACTCGGCGTCGAGCCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 188; Mature: 188
Protein sequence:
>188_residues MRTLLYAIGPMLFDSLGIIVFAVLLALDAGIVPATVAGTVVAVAVVGYELARGRAVAALQWISLASVLFTAAATLFTGDP RFVMAKPTIVYLIVGTVMLRKGWLSRYIPPAQMAIVGDVMDRFGMIWSALMFASAALNLIVALFFTAWWPLFIGVFPLAS KFGLFAVHIAVVHHVTQARLRRGAAVAE
Sequences:
>Translated_188_residues MRTLLYAIGPMLFDSLGIIVFAVLLALDAGIVPATVAGTVVAVAVVGYELARGRAVAALQWISLASVLFTAAATLFTGDP RFVMAKPTIVYLIVGTVMLRKGWLSRYIPPAQMAIVGDVMDRFGMIWSALMFASAALNLIVALFFTAWWPLFIGVFPLAS KFGLFAVHIAVVHHVTQARLRRGAAVAE >Mature_188_residues MRTLLYAIGPMLFDSLGIIVFAVLLALDAGIVPATVAGTVVAVAVVGYELARGRAVAALQWISLASVLFTAAATLFTGDP RFVMAKPTIVYLIVGTVMLRKGWLSRYIPPAQMAIVGDVMDRFGMIWSALMFASAALNLIVALFFTAWWPLFIGVFPLAS KFGLFAVHIAVVHHVTQARLRRGAAVAE
Specific function: Unknown
COG id: COG2917
COG function: function code D; Intracellular septation protein A
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20179; Mature: 20179
Theoretical pI: Translated: 10.79; Mature: 10.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTLLYAIGPMLFDSLGIIVFAVLLALDAGIVPATVAGTVVAVAVVGYELARGRAVAALQ CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH WISLASVLFTAAATLFTGDPRFVMAKPTIVYLIVGTVMLRKGWLSRYIPPAQMAIVGDVM HHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH DRFGMIWSALMFASAALNLIVALFFTAWWPLFIGVFPLASKFGLFAVHIAVVHHVTQARL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRGAAVAE HHCCCCCC >Mature Secondary Structure MRTLLYAIGPMLFDSLGIIVFAVLLALDAGIVPATVAGTVVAVAVVGYELARGRAVAALQ CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH WISLASVLFTAAATLFTGDPRFVMAKPTIVYLIVGTVMLRKGWLSRYIPPAQMAIVGDVM HHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH DRFGMIWSALMFASAALNLIVALFFTAWWPLFIGVFPLASKFGLFAVHIAVVHHVTQARL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRGAAVAE HHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA