Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487481

Identifier: 103487481

GI number: 103487481

Start: 2107424

End: 2108917

Strand: Reverse

Name: 103487481

Synonym: Sala_1998

Alternate gene names: NA

Gene position: 2108917-2107424 (Counterclockwise)

Preceding gene: 103487482

Following gene: 103487478

Centisome position: 63.04

GC content: 68.34

Gene sequence:

>1494_bases
ATGCCGACCCCCTTTTTCGCCGACCTGGTGCGCGAGCTGGCGCAGGAGGGCGGGACCGGGCCGCTGACGCCGACCGGCGC
GGTGCCCGGCCATCGCCGGTTCGCGGGCGCCGTGCCGCCCGGCGTTCCGTTTCATTATGCCGTCGCCGGGATCGCCCATC
CCGATCAGTGGGAGGTCGGGATCGGGCGGATCGACGGCAGCGGGCGGTTGCTGCGTGACGCGGTGGCGGCTTCATCAGCG
GGCGGCGCGACAGTCGATTTCGCGCCGGGGCTGAAAACGATCGCGCTGACCGTTGGCGCCGACTGGTTTGCGGGCCGCGA
TACCGAGGCGGCGGCGCTGGCGGACGAGGTGGCGGCGCTGGGCGGCGAAGTGGCGACCCTGACCGGCGTGGTCGCTACCA
GACAGCCGATTTCGACATTGCATGGCAGCGTGGAGTCGGGCGAAGCGAGCGACACGGTGACACTTCGCCGCGGCGCGGAC
TGGTTCAACATTCCGCTTTCGGCGCTGGCGTTTCGCGATGCCGACGGGCGATATATATTCGGCGCAGCCGTCCCCAATTA
TCTGTTCAACGTGGCGATCGCCAATCCCGCTCGCGGCATCCTCGCCGACTTTGCCAACCTCTCCGGCACGCCGAACGGCG
CCCAGATCAGCTTCACGCAGGCCGGCATCAACAACTGGTGCATCGGGCAGGTTCCGGGGATCGACGCCTTTGCCCTTTAC
CGGGGGCGCAACGGCGCCGCCGATGGCACCGAAATCTGTCGCTGGTCGGGCACCGGCCTTGGCGTCGGCACGTCCCCGGC
TGTCCGGCTGCATGTGAAAGCGGGCGGCGAGATACAGCGGCTCGAAACGACCACGGCGCGCGGCGGTGGCGCCTGTTATC
AGGCCTTTTACGATCCGTCGGGGGCCAAGGGGTTCTGCGGCTATTCGGCGATCGACGATGGCTTCGACATCTGGAACAGC
CTGAACCATCCGATTCGCTTCGGCACGGGCGGCGCCTATCGCTGGGCGATTTCGTCCGCCGGGGGTTTCTATCCGGTCGC
CGACAATGCCTATACCATTGGCGGCAGCGTCAACCGGGTCAGCGAAATCTATGCCGTCAACGGCACGATCAACACCAGTG
ACGCGCGCGAAAAGACATGGCGCGGGCCGCCGACCGAGGCCGAACTGCGCGCCGCGCGGCGGATCGCGGGCGAACTGGGG
TTCTTTCAATGGAACGCCGCGATCGCCGAAAAGGGCGAGGACGGCGCGCGGCTGCACTTCGGCGTGCGCGCGCAGGCGGT
ATGGGCGATCATGGCCGACGAAGGCCTGATCGATCCCGTTGTCGAAGGCGGCGATCCGAGCAGCCGCCATGCCTTTCTTT
GTTACGACGCGGGGGATGAGCGGGGCGGGGACGAGGCCGTCGCCGACCGCTTCGGGGTCCGCACCGATCAGCTCGCGCTG
TTCCTGATCGCGGCGCAGGAAGCGCGGATCGCGGCGCTGGAGGGGGCGGCATGA

Upstream 100 bases:

>100_bases
GGTGCGCGATGGGTGCCCGGTCCGGCTTCCCTTTCCCTTTCGGGAGCGGGCCGGGCGCCAACTGTTCCGATTCCCGAAAC
GTTGAAAGGATGGCTTTGCC

Downstream 100 bases:

>100_bases
TCGACGGATCGGCACTGGCGGCGCGGGCGATCGCCGATGTGGCCCGGCGCGGCCTGGCGAGCGAGTGGGCCGGGCCGGAG
CCCGCCGCGCCGCAGACGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 497; Mature: 496

Protein sequence:

>497_residues
MPTPFFADLVRELAQEGGTGPLTPTGAVPGHRRFAGAVPPGVPFHYAVAGIAHPDQWEVGIGRIDGSGRLLRDAVAASSA
GGATVDFAPGLKTIALTVGADWFAGRDTEAAALADEVAALGGEVATLTGVVATRQPISTLHGSVESGEASDTVTLRRGAD
WFNIPLSALAFRDADGRYIFGAAVPNYLFNVAIANPARGILADFANLSGTPNGAQISFTQAGINNWCIGQVPGIDAFALY
RGRNGAADGTEICRWSGTGLGVGTSPAVRLHVKAGGEIQRLETTTARGGGACYQAFYDPSGAKGFCGYSAIDDGFDIWNS
LNHPIRFGTGGAYRWAISSAGGFYPVADNAYTIGGSVNRVSEIYAVNGTINTSDAREKTWRGPPTEAELRAARRIAGELG
FFQWNAAIAEKGEDGARLHFGVRAQAVWAIMADEGLIDPVVEGGDPSSRHAFLCYDAGDERGGDEAVADRFGVRTDQLAL
FLIAAQEARIAALEGAA

Sequences:

>Translated_497_residues
MPTPFFADLVRELAQEGGTGPLTPTGAVPGHRRFAGAVPPGVPFHYAVAGIAHPDQWEVGIGRIDGSGRLLRDAVAASSA
GGATVDFAPGLKTIALTVGADWFAGRDTEAAALADEVAALGGEVATLTGVVATRQPISTLHGSVESGEASDTVTLRRGAD
WFNIPLSALAFRDADGRYIFGAAVPNYLFNVAIANPARGILADFANLSGTPNGAQISFTQAGINNWCIGQVPGIDAFALY
RGRNGAADGTEICRWSGTGLGVGTSPAVRLHVKAGGEIQRLETTTARGGGACYQAFYDPSGAKGFCGYSAIDDGFDIWNS
LNHPIRFGTGGAYRWAISSAGGFYPVADNAYTIGGSVNRVSEIYAVNGTINTSDAREKTWRGPPTEAELRAARRIAGELG
FFQWNAAIAEKGEDGARLHFGVRAQAVWAIMADEGLIDPVVEGGDPSSRHAFLCYDAGDERGGDEAVADRFGVRTDQLAL
FLIAAQEARIAALEGAA
>Mature_496_residues
PTPFFADLVRELAQEGGTGPLTPTGAVPGHRRFAGAVPPGVPFHYAVAGIAHPDQWEVGIGRIDGSGRLLRDAVAASSAG
GATVDFAPGLKTIALTVGADWFAGRDTEAAALADEVAALGGEVATLTGVVATRQPISTLHGSVESGEASDTVTLRRGADW
FNIPLSALAFRDADGRYIFGAAVPNYLFNVAIANPARGILADFANLSGTPNGAQISFTQAGINNWCIGQVPGIDAFALYR
GRNGAADGTEICRWSGTGLGVGTSPAVRLHVKAGGEIQRLETTTARGGGACYQAFYDPSGAKGFCGYSAIDDGFDIWNSL
NHPIRFGTGGAYRWAISSAGGFYPVADNAYTIGGSVNRVSEIYAVNGTINTSDAREKTWRGPPTEAELRAARRIAGELGF
FQWNAAIAEKGEDGARLHFGVRAQAVWAIMADEGLIDPVVEGGDPSSRHAFLCYDAGDERGGDEAVADRFGVRTDQLALF
LIAAQEARIAALEGAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51734; Mature: 51603

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTPFFADLVRELAQEGGTGPLTPTGAVPGHRRFAGAVPPGVPFHYAVAGIAHPDQWEVG
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEECCCCCCCEEE
IGRIDGSGRLLRDAVAASSAGGATVDFAPGLKTIALTVGADWFAGRDTEAAALADEVAAL
EEEECCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
GGEVATLTGVVATRQPISTLHGSVESGEASDTVTLRRGADWFNIPLSALAFRDADGRYIF
CCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCEEEEECCCCEECCCHHHEEEECCCCCEEE
GAAVPNYLFNVAIANPARGILADFANLSGTPNGAQISFTQAGINNWCIGQVPGIDAFALY
ECCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEECCCCCCEEEEE
RGRNGAADGTEICRWSGTGLGVGTSPAVRLHVKAGGEIQRLETTTARGGGACYQAFYDPS
ECCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCEEEEEEECCC
GAKGFCGYSAIDDGFDIWNSLNHPIRFGTGGAYRWAISSAGGFYPVADNAYTIGGSVNRV
CCCCCCCCCCCCCHHHHHHCCCCCEEECCCCEEEEEEECCCCEEEECCCCEEECCCHHCC
SEIYAVNGTINTSDAREKTWRGPPTEAELRAARRIAGELGFFQWNAAIAEKGEDGARLHF
EEEEEECCEECCCCCHHHHCCCCCCHHHHHHHHHHHHHCCEEEECHHHHCCCCCCCEEEE
GVRAQAVWAIMADEGLIDPVVEGGDPSSRHAFLCYDAGDERGGDEAVADRFGVRTDQLAL
EEEEEEEEEEEECCCCCCHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCHHHEEE
FLIAAQEARIAALEGAA
EEEEECCCEEEEECCCC
>Mature Secondary Structure 
PTPFFADLVRELAQEGGTGPLTPTGAVPGHRRFAGAVPPGVPFHYAVAGIAHPDQWEVG
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEECCCCCCCEEE
IGRIDGSGRLLRDAVAASSAGGATVDFAPGLKTIALTVGADWFAGRDTEAAALADEVAAL
EEEECCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
GGEVATLTGVVATRQPISTLHGSVESGEASDTVTLRRGADWFNIPLSALAFRDADGRYIF
CCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCEEEEECCCCEECCCHHHEEEECCCCCEEE
GAAVPNYLFNVAIANPARGILADFANLSGTPNGAQISFTQAGINNWCIGQVPGIDAFALY
ECCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEECCCCCCEEEEE
RGRNGAADGTEICRWSGTGLGVGTSPAVRLHVKAGGEIQRLETTTARGGGACYQAFYDPS
ECCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCEEEEEEECCC
GAKGFCGYSAIDDGFDIWNSLNHPIRFGTGGAYRWAISSAGGFYPVADNAYTIGGSVNRV
CCCCCCCCCCCCCHHHHHHCCCCCEEECCCCEEEEEEECCCCEEEECCCCEEECCCHHCC
SEIYAVNGTINTSDAREKTWRGPPTEAELRAARRIAGELGFFQWNAAIAEKGEDGARLHF
EEEEEECCEECCCCCHHHHCCCCCCHHHHHHHHHHHHHCCEEEECHHHHCCCCCCCEEEE
GVRAQAVWAIMADEGLIDPVVEGGDPSSRHAFLCYDAGDERGGDEAVADRFGVRTDQLAL
EEEEEEEEEEEECCCCCCHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCHHHEEE
FLIAAQEARIAALEGAA
EEEEECCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA