| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487372
Identifier: 103487372
GI number: 103487372
Start: 1988178
End: 1988771
Strand: Reverse
Name: 103487372
Synonym: Sala_1888
Alternate gene names: NA
Gene position: 1988771-1988178 (Counterclockwise)
Preceding gene: 103487373
Following gene: 103487371
Centisome position: 59.45
GC content: 69.02
Gene sequence:
>594_bases ATGGCGGCCCGCAAGCTGCAGGGGATCGGTCTGGTCCTGCTGGTGCTCCTCTTTGCGATGATGCTTTATCCCGTGTCGCT CAAGGTTGCGGCGACGCGCAGCGAACTCACGCGCGTCGAGCGCGAGATCGACCGCGCGCGCGACAATATCCGCTACCTTG AATCCGAACTCGCGGTGCGCGCATCGATGCGCCAGCTCGAACAGTGGAATGCCGAGGCCTTTGGCTATTCGGCGCCCGAT GCCGGGCAATATCTGGCGAGCGAGCGCCAGCTCGCCTCGCTTGACCGCCTGCCGCGGGCGCGCGGCGCGAACGAGGTCGC ACCGGTGCTGATGGCGATGGTCTCACCCGTCGCGGTGCCCGCCGCGCCCAAGGCCAGCCCGGTTGCCGACAAACCCGCGG TCGCCGCGGCCAAGCCCGTCGTGCTGGCGCAGGTCGACAGCGGCGTTCGCAGCGACGCGCTGCCGCGGATGGCGCCGACG CGCCGCCGCGAGCAATTGAAGATGATCGAGGACCAGCTGCTCGCCGAATCGACGCTCGCCGATTTGAAGCGCGACGCGGC GATCGAAGCGGCAGGAGGCAAGCCCGCCCGATGA
Upstream 100 bases:
>100_bases CGCGCAATCCGCGCGCGCGCTCGGCGACGCTGCGCAGCGCCGTGCGCACCGCGGCGCCGGCCTGGCCGGGCAATTCGATG AAGGAGGCAATGTCATGCTG
Downstream 100 bases:
>100_bases ACACGCTGGTCGTCCGTCCGACCCGGGTGCGTACCGCCGGTGTGCGGCAGCAGATCCTGCTGACCGCGCAACAGCGTTTG ATGATCCTCATGCTGCTGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 197; Mature: 196
Protein sequence:
>197_residues MAARKLQGIGLVLLVLLFAMMLYPVSLKVAATRSELTRVEREIDRARDNIRYLESELAVRASMRQLEQWNAEAFGYSAPD AGQYLASERQLASLDRLPRARGANEVAPVLMAMVSPVAVPAAPKASPVADKPAVAAAKPVVLAQVDSGVRSDALPRMAPT RRREQLKMIEDQLLAESTLADLKRDAAIEAAGGKPAR
Sequences:
>Translated_197_residues MAARKLQGIGLVLLVLLFAMMLYPVSLKVAATRSELTRVEREIDRARDNIRYLESELAVRASMRQLEQWNAEAFGYSAPD AGQYLASERQLASLDRLPRARGANEVAPVLMAMVSPVAVPAAPKASPVADKPAVAAAKPVVLAQVDSGVRSDALPRMAPT RRREQLKMIEDQLLAESTLADLKRDAAIEAAGGKPAR >Mature_196_residues AARKLQGIGLVLLVLLFAMMLYPVSLKVAATRSELTRVEREIDRARDNIRYLESELAVRASMRQLEQWNAEAFGYSAPDA GQYLASERQLASLDRLPRARGANEVAPVLMAMVSPVAVPAAPKASPVADKPAVAAAKPVVLAQVDSGVRSDALPRMAPTR RREQLKMIEDQLLAESTLADLKRDAAIEAAGGKPAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21312; Mature: 21181
Theoretical pI: Translated: 10.22; Mature: 10.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAARKLQGIGLVLLVLLFAMMLYPVSLKVAATRSELTRVEREIDRARDNIRYLESELAVR CCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASMRQLEQWNAEAFGYSAPDAGQYLASERQLASLDRLPRARGANEVAPVLMAMVSPVAVP HHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHCC AAPKASPVADKPAVAAAKPVVLAQVDSGVRSDALPRMAPTRRREQLKMIEDQLLAESTLA CCCCCCCCCCCCCHHHHCCHHEEHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH DLKRDAAIEAAGGKPAR HHHHHHHHCCCCCCCCC >Mature Secondary Structure AARKLQGIGLVLLVLLFAMMLYPVSLKVAATRSELTRVEREIDRARDNIRYLESELAVR CCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASMRQLEQWNAEAFGYSAPDAGQYLASERQLASLDRLPRARGANEVAPVLMAMVSPVAVP HHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHCC AAPKASPVADKPAVAAAKPVVLAQVDSGVRSDALPRMAPTRRREQLKMIEDQLLAESTLA CCCCCCCCCCCCCHHHHCCHHEEHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH DLKRDAAIEAAGGKPAR HHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA