| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is murC
Identifier: 103487364
GI number: 103487364
Start: 1977319
End: 1978752
Strand: Reverse
Name: murC
Synonym: Sala_1880
Alternate gene names: 103487364
Gene position: 1978752-1977319 (Counterclockwise)
Preceding gene: 103487365
Following gene: 103487363
Centisome position: 59.15
GC content: 65.97
Gene sequence:
>1434_bases ATGCGCGGCGTCGCGACCGACATCGGAACCATCCACTTCATCGGCATCGGCGGCATCGGCATGTCGGGGATCGCCGAGGT GATGCATAATCTGGGTTATCGGGTACAGGGCAGCGACATTGCCGACAGCTATGTCGTCGAAGGGCTGAGGAAGCGCGGGA TCAAGGTCGCGATCGGCCATGCGCCGGAGAATGTCGACGGCGTTGCGGTCGTCGTCACCTCGACCGCGGTGAAACGCGGC AATCCCGAGGTGGAAGCCGCGCTGGCGCAGCGCATCCCGATCGTCCGCCGCGCCGAAATGCTCGCCGAACTGATGCGGCT GAAATCGACCGTCGCCATCGCCGGGACGCACGGCAAGACGACGACGACCAGCCTTGTCGCCGCGCTGCTCGATGCCGGCG GGATCGACCCGACGGTGATCAACGGCGGCATCATCAACAATTATGGCTCGAACGCGCGGCTCGGCGCGTCGGACTGGATG GTGGTCGAGGCCGACGAGAGCGACGGCAGCTTTCTGCGACTCGACGGCACGATCGCGGTCGTCACCAATATCGACCCCGA ACATCTCGACCATTATGGCAGCTTCGACGCGATCAAGGACGCGTTCGTCGAGTTTATCGAAAATGTGCCCTTTTACGGCG CGGCGATGCTCTGCCTCGACCATCCGGAGGTGCAGGCGATCATCCCGCGTATCCGCGACCGGCGGATTATCACCTATGGC TTTTCTGCCCAGGCCGACGTGCGCGGCACCAATGTGACCCCCGGCCCCGACGGCAACCGCTTCGACGTCGTCGTGCGCGA CCGCGACGGGAACAGCCGGACGATCGAGGGCATCCATCTGCCGATGTCGGGGCGCCACAATGTCCAGAATGCGCTCGCCG CGGTCGCGGTCGCGCTGCACATGGGGGTGCCGGACGAAAAGATCGTGTCGGGTTTCAACGGTTTTGCCGGGGTCAAGCGG CGCTTCACCAAGGTTGGCGAGATTGTGACCGATGAGGGCGTTGTCACCGTGATCGACGATTATGCGCACCACCCGGTCGA GATTCGCGCGGTGCTGTCGGCGGCGCGTGAAGGCGCGGGGGCGGGGCGCGTCGTCGCCGTCGTCCAGCCGCACCGCTTCA CGCGCCTTCGCGATCATATGGACGATTTCCAGCAGGCGTTTAACGACGCCGACATGGTGTTGGCGCTGCCGGTCTATGCG GCGGGTGAAAGCCCGATCGAGGGCGTGTCGTCGGATGCGCTGGTGCGGGGCCTGCGCGACCGCGGGCATCGGCAGGCGAA TGTCGTCGCCGACGCCGACGCACTGGCCGCAAGCCTTGCCGCGAGTATCAAGGCGGGCGACCTCGGCGCGGGCGATATGA TCATCTGCCTCGGCGCGGGCGACATCACCAAGATGGCGGCTGGGCTGGCGAGCGCGGTGGAGGGTGCGGCGTGA
Upstream 100 bases:
>100_bases AATCCTTTGCCGCGCCGCCGATGATGGACGTGATCCGTGTTGGCGCTTCGCTGCCGCGCGCGGCATCGGGTATCGCGGCT GCGCGCCGGGAGGCGAAGTG
Downstream 100 bases:
>100_bases CACCCTTCTCGTCCCGGATACTGCTTATTTTTCCGTTCGTGTCGAGCGAAGTCGAGACACCCCGCGGCATAGCGCCCAGC CCGATGGGCATCTCGACTTC
Product: UDP-N-acetylmuramate--L-alanine ligase
Products: NA
Alternate protein names: UDP-N-acetylmuramoyl-L-alanine synthetase
Number of amino acids: Translated: 477; Mature: 477
Protein sequence:
>477_residues MRGVATDIGTIHFIGIGGIGMSGIAEVMHNLGYRVQGSDIADSYVVEGLRKRGIKVAIGHAPENVDGVAVVVTSTAVKRG NPEVEAALAQRIPIVRRAEMLAELMRLKSTVAIAGTHGKTTTTSLVAALLDAGGIDPTVINGGIINNYGSNARLGASDWM VVEADESDGSFLRLDGTIAVVTNIDPEHLDHYGSFDAIKDAFVEFIENVPFYGAAMLCLDHPEVQAIIPRIRDRRIITYG FSAQADVRGTNVTPGPDGNRFDVVVRDRDGNSRTIEGIHLPMSGRHNVQNALAAVAVALHMGVPDEKIVSGFNGFAGVKR RFTKVGEIVTDEGVVTVIDDYAHHPVEIRAVLSAAREGAGAGRVVAVVQPHRFTRLRDHMDDFQQAFNDADMVLALPVYA AGESPIEGVSSDALVRGLRDRGHRQANVVADADALAASLAASIKAGDLGAGDMIICLGAGDITKMAAGLASAVEGAA
Sequences:
>Translated_477_residues MRGVATDIGTIHFIGIGGIGMSGIAEVMHNLGYRVQGSDIADSYVVEGLRKRGIKVAIGHAPENVDGVAVVVTSTAVKRG NPEVEAALAQRIPIVRRAEMLAELMRLKSTVAIAGTHGKTTTTSLVAALLDAGGIDPTVINGGIINNYGSNARLGASDWM VVEADESDGSFLRLDGTIAVVTNIDPEHLDHYGSFDAIKDAFVEFIENVPFYGAAMLCLDHPEVQAIIPRIRDRRIITYG FSAQADVRGTNVTPGPDGNRFDVVVRDRDGNSRTIEGIHLPMSGRHNVQNALAAVAVALHMGVPDEKIVSGFNGFAGVKR RFTKVGEIVTDEGVVTVIDDYAHHPVEIRAVLSAAREGAGAGRVVAVVQPHRFTRLRDHMDDFQQAFNDADMVLALPVYA AGESPIEGVSSDALVRGLRDRGHRQANVVADADALAASLAASIKAGDLGAGDMIICLGAGDITKMAAGLASAVEGAA >Mature_477_residues MRGVATDIGTIHFIGIGGIGMSGIAEVMHNLGYRVQGSDIADSYVVEGLRKRGIKVAIGHAPENVDGVAVVVTSTAVKRG NPEVEAALAQRIPIVRRAEMLAELMRLKSTVAIAGTHGKTTTTSLVAALLDAGGIDPTVINGGIINNYGSNARLGASDWM VVEADESDGSFLRLDGTIAVVTNIDPEHLDHYGSFDAIKDAFVEFIENVPFYGAAMLCLDHPEVQAIIPRIRDRRIITYG FSAQADVRGTNVTPGPDGNRFDVVVRDRDGNSRTIEGIHLPMSGRHNVQNALAAVAVALHMGVPDEKIVSGFNGFAGVKR RFTKVGEIVTDEGVVTVIDDYAHHPVEIRAVLSAAREGAGAGRVVAVVQPHRFTRLRDHMDDFQQAFNDADMVLALPVYA AGESPIEGVSSDALVRGLRDRGHRQANVVADADALAASLAASIKAGDLGAGDMIICLGAGDITKMAAGLASAVEGAA
Specific function: Cell wall formation
COG id: COG0773
COG function: function code M; UDP-N-acetylmuramate-alanine ligase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family
Homologues:
Organism=Escherichia coli, GI1786279, Length=468, Percent_Identity=44.8717948717949, Blast_Score=340, Evalue=1e-94, Organism=Escherichia coli, GI1790680, Length=404, Percent_Identity=30.4455445544554, Blast_Score=160, Evalue=2e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MURC_SPHAL (Q1GRY0)
Other databases:
- EMBL: CP000356 - RefSeq: YP_616925.1 - ProteinModelPortal: Q1GRY0 - SMR: Q1GRY0 - GeneID: 4082625 - GenomeReviews: CP000356_GR - KEGG: sal:Sala_1880 - NMPDR: fig|317655.9.peg.1808 - HOGENOM: HBG476594 - OMA: YQPHRYS - ProtClustDB: PRK00421 - BioCyc: SALA317655:SALA_1880-MONOMER - BRENDA: 6.3.2.8 - GO: GO:0005737 - HAMAP: MF_00046 - InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR016040 - InterPro: IPR005758 - Gene3D: G3DSA:3.90.190.20 - Gene3D: G3DSA:3.40.1190.10 - Gene3D: G3DSA:3.40.50.720 - TIGRFAMs: TIGR01082
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M; SSF53244 Mur_ligase_C; SSF53623 Mur_ligase_cen
EC number: =6.3.2.8
Molecular weight: Translated: 50172; Mature: 50172
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGVATDIGTIHFIGIGGIGMSGIAEVMHNLGYRVQGSDIADSYVVEGLRKRGIKVAIGH CCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHCCCEEEECC APENVDGVAVVVTSTAVKRGNPEVEAALAQRIPIVRRAEMLAELMRLKSTVAIAGTHGKT CCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCEEEEEECCCCC TTTSLVAALLDAGGIDPTVINGGIINNYGSNARLGASDWMVVEADESDGSFLRLDGTIAV HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEECCCCEEEEEECCCCCCEEEECCEEEE VTNIDPEHLDHYGSFDAIKDAFVEFIENVPFYGAAMLCLDHPEVQAIIPRIRDRRIITYG EECCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCEEEEEC FSAQADVRGTNVTPGPDGNRFDVVVRDRDGNSRTIEGIHLPMSGRHNVQNALAAVAVALH CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH MGVPDEKIVSGFNGFAGVKRRFTKVGEIVTDEGVVTVIDDYAHHPVEIRAVLSAAREGAG CCCCHHHHHHCCCHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCHHHHHHHHHHHCCCC AGRVVAVVQPHRFTRLRDHMDDFQQAFNDADMVLALPVYAAGESPIEGVSSDALVRGLRD CCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHH RGHRQANVVADADALAASLAASIKAGDLGAGDMIICLGAGDITKMAAGLASAVEGAA CCCCCEEEEECHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure MRGVATDIGTIHFIGIGGIGMSGIAEVMHNLGYRVQGSDIADSYVVEGLRKRGIKVAIGH CCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHCCCEEEECC APENVDGVAVVVTSTAVKRGNPEVEAALAQRIPIVRRAEMLAELMRLKSTVAIAGTHGKT CCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCEEEEEECCCCC TTTSLVAALLDAGGIDPTVINGGIINNYGSNARLGASDWMVVEADESDGSFLRLDGTIAV HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEECCCCEEEEEECCCCCCEEEECCEEEE VTNIDPEHLDHYGSFDAIKDAFVEFIENVPFYGAAMLCLDHPEVQAIIPRIRDRRIITYG EECCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCEEEEEC FSAQADVRGTNVTPGPDGNRFDVVVRDRDGNSRTIEGIHLPMSGRHNVQNALAAVAVALH CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH MGVPDEKIVSGFNGFAGVKRRFTKVGEIVTDEGVVTVIDDYAHHPVEIRAVLSAAREGAG CCCCHHHHHHCCCHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCHHHHHHHHHHHCCCC AGRVVAVVQPHRFTRLRDHMDDFQQAFNDADMVLALPVYAAGESPIEGVSSDALVRGLRD CCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHH RGHRQANVVADADALAASLAASIKAGDLGAGDMIICLGAGDITKMAAGLASAVEGAA CCCCCEEEEECHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA