Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487090

Identifier: 103487090

GI number: 103487090

Start: 1681887

End: 1683209

Strand: Direct

Name: 103487090

Synonym: Sala_1605

Alternate gene names: NA

Gene position: 1681887-1683209 (Clockwise)

Preceding gene: 103487088

Following gene: 103487092

Centisome position: 50.28

GC content: 69.01

Gene sequence:

>1323_bases
ATGGCGACAGCATCGCACTCCATCCCCTCCGACCGCATGGCGGTGCTCTTCGCGGTGATGCTCGTCGCGGCGGCAGGCAA
CACCGCCATGCAGTCGATCCTTCCGGCTATCGGCGCCAAACTGCGCATCCCCGACGTGTGGGTCAGTCTGGCCTTCAGCT
GGTCGGCGCTGCTCTGGGTGCTCACCGCGCCGCACTGGGCGCGCCAGTCGGACAAGCGCGGGCGCAAGGCGCTGATGGCG
CTGGGGGTGATCGGTTTCCTGTCGTCGATGGCGCTGTGCGGTCTCGTCCTGTGGTCGGGGCTGCAGGGCTGGTTCGCGGC
GGGCATGACCTTCGTCCTTTTCGCGCTCTTCCGCAGCCTTTATGGCGGGCTGGGTTCTGCCGCGCCGCCCGCGGTGCAGG
CCTATGTCGCCGCGCGCACCGACCCCGACCAGCGGACGCAGGCGCTGTCGCTCGTCTCCTCCTCCTTCGGGCTCGGCACG
GTGATCGGTCCCGCGATCGCGCCCTTCTTCATCCTTCCCGTCGTCGGCCTCGCCGGGCCACTGCTCGTCTTCGCTCTCAT
CGGGCTTGCCGTGCTCATCGCGCTGCGCTGGCGCCTTCCCAACGACGTGCCGCGCTTTGCCGCGCGCGGTTCGATCATGT
CCTATCCCACCACCGGCGCGTCGTCGCAGGCCGCCACGGACGAAGATGACGAACAAACCTCCGATCGGAGCGCTTCCGAA
CCGCAGCCGCTGCGCTGGACCGACACGCGCGTGCGCCCTTGGCTTTTTGCCGGGTTCCTCGGCGGACAGGCGCAGGCGAT
GATGCTCGGCGTGATCGGTTTTTTGATCCTCGACCGGCTGAACCTGCGGCTGCGTCCCGACGAGGGCGCGGCGATGACCG
GCATCGTGCTGATGGCGGGCGCCTTTGCGACCCTGCTCTCGCAATGGGGACTGATCCCGCTCCTCAAAATGTCGCCGCGC
ACCGCGGTGCTCGGCGGCGCGGCGCTCGGCGGCGCGGGGACGCTCCTCACCGGCCTGTCTTACGACTTTCACGGTATCGT
CATCGGTTTCGCCCTCGCCTCGCTCGGCTTCGGCCTGTTCCGTCCGGGGTTCACCGCCGGCGCCTCGCTCGCCGTGCCGC
GCCGCGACCAGGGCGGGGTCGCGGGGATGACCGCGTCGATCAACGGATCGGCCTATATCGTCTCCCCCGCGATCGGCGTC
CTCGTTTATAACTGGCACCCCATCGTGGCCTACGGCCTGATGGCGGGATTCTGCGGCTGGCTCGTGCTCTGGGGCTGGGC
GGCGCTGCGGCTGGACCAGCCTGTTAGGGACAGGACCCATTAA

Upstream 100 bases:

>100_bases
AGGGGCGTCGCGCAAGGAAAGAGTCTGTCTTGACTCTGGACAGCCCGACGACGGTGTGTAGGGAGGGCGCACGGCTGACG
GAGAGCAAAGAGGGGCGGAC

Downstream 100 bases:

>100_bases
TAGCGAACCACATCAGTAAATACCTTGTCATCCCGGCGAAGGCCGGGACGACATGCGCATTCAGTCGCGCGGCTCATCAT
GCTTCTGGTCGCGGACCGGT

Product: major facilitator transporter

Products: NA

Alternate protein names: Facilitator Superfamily Protein; DrugH+ Antiporter-1 Family Protein; Facilitator Superfamily Transporter; Multidrug-Efflux Transporter; Multidrug Resistance Protein; Permease Of Facilitator Superfamily; Facilitator Family Transporter; MFS Superfamily Transporter

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MATASHSIPSDRMAVLFAVMLVAAAGNTAMQSILPAIGAKLRIPDVWVSLAFSWSALLWVLTAPHWARQSDKRGRKALMA
LGVIGFLSSMALCGLVLWSGLQGWFAAGMTFVLFALFRSLYGGLGSAAPPAVQAYVAARTDPDQRTQALSLVSSSFGLGT
VIGPAIAPFFILPVVGLAGPLLVFALIGLAVLIALRWRLPNDVPRFAARGSIMSYPTTGASSQAATDEDDEQTSDRSASE
PQPLRWTDTRVRPWLFAGFLGGQAQAMMLGVIGFLILDRLNLRLRPDEGAAMTGIVLMAGAFATLLSQWGLIPLLKMSPR
TAVLGGAALGGAGTLLTGLSYDFHGIVIGFALASLGFGLFRPGFTAGASLAVPRRDQGGVAGMTASINGSAYIVSPAIGV
LVYNWHPIVAYGLMAGFCGWLVLWGWAALRLDQPVRDRTH

Sequences:

>Translated_440_residues
MATASHSIPSDRMAVLFAVMLVAAAGNTAMQSILPAIGAKLRIPDVWVSLAFSWSALLWVLTAPHWARQSDKRGRKALMA
LGVIGFLSSMALCGLVLWSGLQGWFAAGMTFVLFALFRSLYGGLGSAAPPAVQAYVAARTDPDQRTQALSLVSSSFGLGT
VIGPAIAPFFILPVVGLAGPLLVFALIGLAVLIALRWRLPNDVPRFAARGSIMSYPTTGASSQAATDEDDEQTSDRSASE
PQPLRWTDTRVRPWLFAGFLGGQAQAMMLGVIGFLILDRLNLRLRPDEGAAMTGIVLMAGAFATLLSQWGLIPLLKMSPR
TAVLGGAALGGAGTLLTGLSYDFHGIVIGFALASLGFGLFRPGFTAGASLAVPRRDQGGVAGMTASINGSAYIVSPAIGV
LVYNWHPIVAYGLMAGFCGWLVLWGWAALRLDQPVRDRTH
>Mature_439_residues
ATASHSIPSDRMAVLFAVMLVAAAGNTAMQSILPAIGAKLRIPDVWVSLAFSWSALLWVLTAPHWARQSDKRGRKALMAL
GVIGFLSSMALCGLVLWSGLQGWFAAGMTFVLFALFRSLYGGLGSAAPPAVQAYVAARTDPDQRTQALSLVSSSFGLGTV
IGPAIAPFFILPVVGLAGPLLVFALIGLAVLIALRWRLPNDVPRFAARGSIMSYPTTGASSQAATDEDDEQTSDRSASEP
QPLRWTDTRVRPWLFAGFLGGQAQAMMLGVIGFLILDRLNLRLRPDEGAAMTGIVLMAGAFATLLSQWGLIPLLKMSPRT
AVLGGAALGGAGTLLTGLSYDFHGIVIGFALASLGFGLFRPGFTAGASLAVPRRDQGGVAGMTASINGSAYIVSPAIGVL
VYNWHPIVAYGLMAGFCGWLVLWGWAALRLDQPVRDRTH

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46368; Mature: 46237

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATASHSIPSDRMAVLFAVMLVAAAGNTAMQSILPAIGAKLRIPDVWVSLAFSWSALLWV
CCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHH
LTAPHWARQSDKRGRKALMALGVIGFLSSMALCGLVLWSGLQGWFAAGMTFVLFALFRSL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGGLGSAAPPAVQAYVAARTDPDQRTQALSLVSSSFGLGTVIGPAIAPFFILPVVGLAGP
HCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LLVFALIGLAVLIALRWRLPNDVPRFAARGSIMSYPTTGASSQAATDEDDEQTSDRSASE
HHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHCCCCCCC
PQPLRWTDTRVRPWLFAGFLGGQAQAMMLGVIGFLILDRLNLRLRPDEGAAMTGIVLMAG
CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHH
AFATLLSQWGLIPLLKMSPRTAVLGGAALGGAGTLLTGLSYDFHGIVIGFALASLGFGLF
HHHHHHHHCCCCEEEECCCCHHEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
RPGFTAGASLAVPRRDQGGVAGMTASINGSAYIVSPAIGVLVYNWHPIVAYGLMAGFCGW
CCCCCCCCCEECCCCCCCCCEEEEEECCCCEEEECCCEEEEEECCHHHHHHHHHHHHHHH
LVLWGWAALRLDQPVRDRTH
HHHHHHHHHHCCCCHHCCCC
>Mature Secondary Structure 
ATASHSIPSDRMAVLFAVMLVAAAGNTAMQSILPAIGAKLRIPDVWVSLAFSWSALLWV
CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHH
LTAPHWARQSDKRGRKALMALGVIGFLSSMALCGLVLWSGLQGWFAAGMTFVLFALFRSL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGGLGSAAPPAVQAYVAARTDPDQRTQALSLVSSSFGLGTVIGPAIAPFFILPVVGLAGP
HCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LLVFALIGLAVLIALRWRLPNDVPRFAARGSIMSYPTTGASSQAATDEDDEQTSDRSASE
HHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHCCCCCCC
PQPLRWTDTRVRPWLFAGFLGGQAQAMMLGVIGFLILDRLNLRLRPDEGAAMTGIVLMAG
CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHH
AFATLLSQWGLIPLLKMSPRTAVLGGAALGGAGTLLTGLSYDFHGIVIGFALASLGFGLF
HHHHHHHHCCCCEEEECCCCHHEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
RPGFTAGASLAVPRRDQGGVAGMTASINGSAYIVSPAIGVLVYNWHPIVAYGLMAGFCGW
CCCCCCCCCEECCCCCCCCCEEEEEECCCCEEEECCCEEEEEECCHHHHHHHHHHHHHHH
LVLWGWAALRLDQPVRDRTH
HHHHHHHHHHCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA