Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is pmi [H]

Identifier: 103487077

GI number: 103487077

Start: 1668378

End: 1669184

Strand: Direct

Name: pmi [H]

Synonym: Sala_1592

Alternate gene names: 103487077

Gene position: 1668378-1669184 (Clockwise)

Preceding gene: 103487076

Following gene: 103487078

Centisome position: 49.87

GC content: 64.93

Gene sequence:

>807_bases
ATGTTGTCTCGCCTCGAAACGATCATCGTGGAAAAGCCCTGGGGGCGGACTGACATTGCCGGCGACTTCGGCGATTTTGG
CGATCGCCGTGTCGGCGAGATCTGGTTTTCGCATCCCGATGGCCGCGACGCGCCCATCATGGTCAAGTTTCTTTTCACTT
CCGAACGCCTGTCGATTCAGGTTCATCCTGACGATGAGGCAGCGATCACGGCGGGCTATCCGCGCGGCAAGGAGGAGTGC
TGGCTCGTCCTGAATGCGGACCCTGGCGCTGAATTGGGCGTCGGCCTTAACGCCCCGACGACATCCGAGGCGCTGCGCCA
TGCCGCGCTCGACGGCACGATCGTGAACATGGTCGATTGGCGAGCCGCCCGGACCGACGATTTCATCTATAACCCCGCGG
GCACGATCCATGCGATCGGCGGCGGGCTGGTCATCGTCGAGGTGCAACAGAATATCGACTGCACCTATCGCCTCTATGAT
TATGGGCGCCCGCGCGAGCTTCATCTGGATGAAGGACTCGCGGTCGCGGCGACGAAGCCGGTCGCCGATCCGCGCGATGG
CCGGGTCGATCCCGCCAGGTCGCGGCTGCTCGTCGACGGCCCGCATTTCGGCCTGCTCCACCTCGCCGGCGCCGATGCCG
CCGCGCTTCTGCCACACCACCATGCCGACTATATTTTCACACCGCTCTCGCCGGGTTGCGCGATCGCGGGCGAGCCCATC
GGCCTCGGCGAATGCGTGGCCACCGACCGCGCCGACGCCATCGCGCTGGAACCCGGTGCCCGTGCTTTACTGAGTTGGCC
CACCTGA

Upstream 100 bases:

>100_bases
GTGGCCCGATCAGCCAAGTGTCGGCAATACAAACCGTTTCACTCGCGCAGCCTGACCGTTCTTGCTTGACGTCTCATGGC
AGGCCCAACATGGTGGCGCG

Downstream 100 bases:

>100_bases
TTTCGCGCCCTAAAGCTTGTCCATGACCATCATCGTCCCCGTCATCCTTTCCGGCGGCTCCGGCACGCGCCTCTGGCCCG
TATCGACCGCCGAGGCTCCC

Product: phosphomannose isomerase-like protein

Products: NA

Alternate protein names: Phosphohexomutase; Phosphomannose isomerase; PMI [H]

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MLSRLETIIVEKPWGRTDIAGDFGDFGDRRVGEIWFSHPDGRDAPIMVKFLFTSERLSIQVHPDDEAAITAGYPRGKEEC
WLVLNADPGAELGVGLNAPTTSEALRHAALDGTIVNMVDWRAARTDDFIYNPAGTIHAIGGGLVIVEVQQNIDCTYRLYD
YGRPRELHLDEGLAVAATKPVADPRDGRVDPARSRLLVDGPHFGLLHLAGADAAALLPHHHADYIFTPLSPGCAIAGEPI
GLGECVATDRADAIALEPGARALLSWPT

Sequences:

>Translated_268_residues
MLSRLETIIVEKPWGRTDIAGDFGDFGDRRVGEIWFSHPDGRDAPIMVKFLFTSERLSIQVHPDDEAAITAGYPRGKEEC
WLVLNADPGAELGVGLNAPTTSEALRHAALDGTIVNMVDWRAARTDDFIYNPAGTIHAIGGGLVIVEVQQNIDCTYRLYD
YGRPRELHLDEGLAVAATKPVADPRDGRVDPARSRLLVDGPHFGLLHLAGADAAALLPHHHADYIFTPLSPGCAIAGEPI
GLGECVATDRADAIALEPGARALLSWPT
>Mature_268_residues
MLSRLETIIVEKPWGRTDIAGDFGDFGDRRVGEIWFSHPDGRDAPIMVKFLFTSERLSIQVHPDDEAAITAGYPRGKEEC
WLVLNADPGAELGVGLNAPTTSEALRHAALDGTIVNMVDWRAARTDDFIYNPAGTIHAIGGGLVIVEVQQNIDCTYRLYD
YGRPRELHLDEGLAVAATKPVADPRDGRVDPARSRLLVDGPHFGLLHLAGADAAALLPHHHADYIFTPLSPGCAIAGEPI
GLGECVATDRADAIALEPGARALLSWPT

Specific function: Unknown

COG id: COG1482

COG function: function code G; Phosphomannose isomerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mannose-6-phosphate isomerase type 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR001250
- InterPro:   IPR014628
- InterPro:   IPR014710 [H]

Pfam domain/function: PF01238 PMI_typeI [H]

EC number: =5.3.1.8 [H]

Molecular weight: Translated: 28897; Mature: 28897

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRLETIIVEKPWGRTDIAGDFGDFGDRRVGEIWFSHPDGRDAPIMVKFLFTSERLSIQ
CCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEECCEEEEE
VHPDDEAAITAGYPRGKEECWLVLNADPGAELGVGLNAPTTSEALRHAALDGTIVNMVDW
ECCCCCCEEEECCCCCCCEEEEEEECCCCCCEEECCCCCCHHHHHHHHHCCCEEEEEECC
RAARTDDFIYNPAGTIHAIGGGLVIVEVQQNIDCTYRLYDYGRPRELHLDEGLAVAATKP
CCCCCCCEEECCCCEEEEECCCEEEEEEECCCCEEEEEECCCCCEEEECCCCEEEEEECC
VADPRDGRVDPARSRLLVDGPHFGLLHLAGADAAALLPHHHADYIFTPLSPGCAIAGEPI
CCCCCCCCCCHHHCEEEEECCCEEEEEECCCCCEEECCCCCCCEEEECCCCCCEECCCCC
GLGECVATDRADAIALEPGARALLSWPT
CCCCEEECCCCCEEEECCCCCEEEECCC
>Mature Secondary Structure
MLSRLETIIVEKPWGRTDIAGDFGDFGDRRVGEIWFSHPDGRDAPIMVKFLFTSERLSIQ
CCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEECCEEEEE
VHPDDEAAITAGYPRGKEECWLVLNADPGAELGVGLNAPTTSEALRHAALDGTIVNMVDW
ECCCCCCEEEECCCCCCCEEEEEEECCCCCCEEECCCCCCHHHHHHHHHCCCEEEEEECC
RAARTDDFIYNPAGTIHAIGGGLVIVEVQQNIDCTYRLYDYGRPRELHLDEGLAVAATKP
CCCCCCCEEECCCCEEEEECCCEEEEEEECCCCEEEEEECCCCCEEEECCCCEEEEEECC
VADPRDGRVDPARSRLLVDGPHFGLLHLAGADAAALLPHHHADYIFTPLSPGCAIAGEPI
CCCCCCCCCCHHHCEEEEECCCEEEEEECCCCCEEECCCCCCCEEEECCCCCCEECCCCC
GLGECVATDRADAIALEPGARALLSWPT
CCCCEEECCCCCEEEECCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8293960; 12397186 [H]