| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is pmi [H]
Identifier: 103487077
GI number: 103487077
Start: 1668378
End: 1669184
Strand: Direct
Name: pmi [H]
Synonym: Sala_1592
Alternate gene names: 103487077
Gene position: 1668378-1669184 (Clockwise)
Preceding gene: 103487076
Following gene: 103487078
Centisome position: 49.87
GC content: 64.93
Gene sequence:
>807_bases ATGTTGTCTCGCCTCGAAACGATCATCGTGGAAAAGCCCTGGGGGCGGACTGACATTGCCGGCGACTTCGGCGATTTTGG CGATCGCCGTGTCGGCGAGATCTGGTTTTCGCATCCCGATGGCCGCGACGCGCCCATCATGGTCAAGTTTCTTTTCACTT CCGAACGCCTGTCGATTCAGGTTCATCCTGACGATGAGGCAGCGATCACGGCGGGCTATCCGCGCGGCAAGGAGGAGTGC TGGCTCGTCCTGAATGCGGACCCTGGCGCTGAATTGGGCGTCGGCCTTAACGCCCCGACGACATCCGAGGCGCTGCGCCA TGCCGCGCTCGACGGCACGATCGTGAACATGGTCGATTGGCGAGCCGCCCGGACCGACGATTTCATCTATAACCCCGCGG GCACGATCCATGCGATCGGCGGCGGGCTGGTCATCGTCGAGGTGCAACAGAATATCGACTGCACCTATCGCCTCTATGAT TATGGGCGCCCGCGCGAGCTTCATCTGGATGAAGGACTCGCGGTCGCGGCGACGAAGCCGGTCGCCGATCCGCGCGATGG CCGGGTCGATCCCGCCAGGTCGCGGCTGCTCGTCGACGGCCCGCATTTCGGCCTGCTCCACCTCGCCGGCGCCGATGCCG CCGCGCTTCTGCCACACCACCATGCCGACTATATTTTCACACCGCTCTCGCCGGGTTGCGCGATCGCGGGCGAGCCCATC GGCCTCGGCGAATGCGTGGCCACCGACCGCGCCGACGCCATCGCGCTGGAACCCGGTGCCCGTGCTTTACTGAGTTGGCC CACCTGA
Upstream 100 bases:
>100_bases GTGGCCCGATCAGCCAAGTGTCGGCAATACAAACCGTTTCACTCGCGCAGCCTGACCGTTCTTGCTTGACGTCTCATGGC AGGCCCAACATGGTGGCGCG
Downstream 100 bases:
>100_bases TTTCGCGCCCTAAAGCTTGTCCATGACCATCATCGTCCCCGTCATCCTTTCCGGCGGCTCCGGCACGCGCCTCTGGCCCG TATCGACCGCCGAGGCTCCC
Product: phosphomannose isomerase-like protein
Products: NA
Alternate protein names: Phosphohexomutase; Phosphomannose isomerase; PMI [H]
Number of amino acids: Translated: 268; Mature: 268
Protein sequence:
>268_residues MLSRLETIIVEKPWGRTDIAGDFGDFGDRRVGEIWFSHPDGRDAPIMVKFLFTSERLSIQVHPDDEAAITAGYPRGKEEC WLVLNADPGAELGVGLNAPTTSEALRHAALDGTIVNMVDWRAARTDDFIYNPAGTIHAIGGGLVIVEVQQNIDCTYRLYD YGRPRELHLDEGLAVAATKPVADPRDGRVDPARSRLLVDGPHFGLLHLAGADAAALLPHHHADYIFTPLSPGCAIAGEPI GLGECVATDRADAIALEPGARALLSWPT
Sequences:
>Translated_268_residues MLSRLETIIVEKPWGRTDIAGDFGDFGDRRVGEIWFSHPDGRDAPIMVKFLFTSERLSIQVHPDDEAAITAGYPRGKEEC WLVLNADPGAELGVGLNAPTTSEALRHAALDGTIVNMVDWRAARTDDFIYNPAGTIHAIGGGLVIVEVQQNIDCTYRLYD YGRPRELHLDEGLAVAATKPVADPRDGRVDPARSRLLVDGPHFGLLHLAGADAAALLPHHHADYIFTPLSPGCAIAGEPI GLGECVATDRADAIALEPGARALLSWPT >Mature_268_residues MLSRLETIIVEKPWGRTDIAGDFGDFGDRRVGEIWFSHPDGRDAPIMVKFLFTSERLSIQVHPDDEAAITAGYPRGKEEC WLVLNADPGAELGVGLNAPTTSEALRHAALDGTIVNMVDWRAARTDDFIYNPAGTIHAIGGGLVIVEVQQNIDCTYRLYD YGRPRELHLDEGLAVAATKPVADPRDGRVDPARSRLLVDGPHFGLLHLAGADAAALLPHHHADYIFTPLSPGCAIAGEPI GLGECVATDRADAIALEPGARALLSWPT
Specific function: Unknown
COG id: COG1482
COG function: function code G; Phosphomannose isomerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mannose-6-phosphate isomerase type 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011051 - InterPro: IPR001250 - InterPro: IPR014628 - InterPro: IPR014710 [H]
Pfam domain/function: PF01238 PMI_typeI [H]
EC number: =5.3.1.8 [H]
Molecular weight: Translated: 28897; Mature: 28897
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSRLETIIVEKPWGRTDIAGDFGDFGDRRVGEIWFSHPDGRDAPIMVKFLFTSERLSIQ CCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEECCEEEEE VHPDDEAAITAGYPRGKEECWLVLNADPGAELGVGLNAPTTSEALRHAALDGTIVNMVDW ECCCCCCEEEECCCCCCCEEEEEEECCCCCCEEECCCCCCHHHHHHHHHCCCEEEEEECC RAARTDDFIYNPAGTIHAIGGGLVIVEVQQNIDCTYRLYDYGRPRELHLDEGLAVAATKP CCCCCCCEEECCCCEEEEECCCEEEEEEECCCCEEEEEECCCCCEEEECCCCEEEEEECC VADPRDGRVDPARSRLLVDGPHFGLLHLAGADAAALLPHHHADYIFTPLSPGCAIAGEPI CCCCCCCCCCHHHCEEEEECCCEEEEEECCCCCEEECCCCCCCEEEECCCCCCEECCCCC GLGECVATDRADAIALEPGARALLSWPT CCCCEEECCCCCEEEECCCCCEEEECCC >Mature Secondary Structure MLSRLETIIVEKPWGRTDIAGDFGDFGDRRVGEIWFSHPDGRDAPIMVKFLFTSERLSIQ CCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEECCEEEEE VHPDDEAAITAGYPRGKEECWLVLNADPGAELGVGLNAPTTSEALRHAALDGTIVNMVDW ECCCCCCEEEECCCCCCCEEEEEEECCCCCCEEECCCCCCHHHHHHHHHCCCEEEEEECC RAARTDDFIYNPAGTIHAIGGGLVIVEVQQNIDCTYRLYDYGRPRELHLDEGLAVAATKP CCCCCCCEEECCCCEEEEECCCEEEEEEECCCCEEEEEECCCCCEEEECCCCEEEEEECC VADPRDGRVDPARSRLLVDGPHFGLLHLAGADAAALLPHHHADYIFTPLSPGCAIAGEPI CCCCCCCCCCHHHCEEEEECCCEEEEEECCCCCEEECCCCCCCEEEECCCCCCEECCCCC GLGECVATDRADAIALEPGARALLSWPT CCCCEEECCCCCEEEECCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8293960; 12397186 [H]