| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486916
Identifier: 103486916
GI number: 103486916
Start: 1480307
End: 1480705
Strand: Direct
Name: 103486916
Synonym: Sala_1430
Alternate gene names: NA
Gene position: 1480307-1480705 (Clockwise)
Preceding gene: 103486913
Following gene: 103486917
Centisome position: 44.25
GC content: 65.16
Gene sequence:
>399_bases ATGCGTATCTTGAGCAAAGGCCTGATGGGCGCATTTGTCGCCGCCAGCGTCCTTGGCACCACACCGCTCCATGCGGGCGT GACGACCCCGGCAAAGGCGCCGGGTTATCACGGGTTCGAACAGGCGTCGGACTTTCACCGCAAGCGGAAACATCACCGCC ATTATGCGCGTGGCGAGCGGCTTGGCCGGGATTCGCGCATCTGGCGCGGCAATGACGGTCGCTATTATTGCAGGAAGGAC AATGGCACGACCGGCCTGCTGATCGGCGGCGCCGTCGGCGGCCTCGCCGGTCACGAGATTGCAGGCGACGGCGACAAGCT GCTCGGCACCGTGCTTGGCGCTGCCGGGGGTGCGCTGCTCGGTCGGGAGATCGACCGCGACAAATATCGCTGCCGTTAA
Upstream 100 bases:
>100_bases CAAGGTTCATGCAACAGGATTCGGACCTGACTCGTTTTATTCCCGAAGCGCCCGGCTTCGTCCCGCGGAGACGAGGCGCC GAACCAGGAAAGGACTTGTC
Downstream 100 bases:
>100_bases CGAACAGAAACCGTCTCGCGTGCGGGTTTGAGACCCCTCCACCCGCACACGCTGATGGCGAGGGCACCGGTTAGCGCCGG TGCCCTCAAGCGTGCAGGCG
Product: 17 kDa surface antigen
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 132; Mature: 132
Protein sequence:
>132_residues MRILSKGLMGAFVAASVLGTTPLHAGVTTPAKAPGYHGFEQASDFHRKRKHHRHYARGERLGRDSRIWRGNDGRYYCRKD NGTTGLLIGGAVGGLAGHEIAGDGDKLLGTVLGAAGGALLGREIDRDKYRCR
Sequences:
>Translated_132_residues MRILSKGLMGAFVAASVLGTTPLHAGVTTPAKAPGYHGFEQASDFHRKRKHHRHYARGERLGRDSRIWRGNDGRYYCRKD NGTTGLLIGGAVGGLAGHEIAGDGDKLLGTVLGAAGGALLGREIDRDKYRCR >Mature_132_residues MRILSKGLMGAFVAASVLGTTPLHAGVTTPAKAPGYHGFEQASDFHRKRKHHRHYARGERLGRDSRIWRGNDGRYYCRKD NGTTGLLIGGAVGGLAGHEIAGDGDKLLGTVLGAAGGALLGREIDRDKYRCR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14168; Mature: 14168
Theoretical pI: Translated: 10.65; Mature: 10.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRILSKGLMGAFVAASVLGTTPLHAGVTTPAKAPGYHGFEQASDFHRKRKHHRHYARGER CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH LGRDSRIWRGNDGRYYCRKDNGTTGLLIGGAVGGLAGHEIAGDGDKLLGTVLGAAGGALL CCCCCCEEECCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHH GREIDRDKYRCR CCCCCCCCCCCC >Mature Secondary Structure MRILSKGLMGAFVAASVLGTTPLHAGVTTPAKAPGYHGFEQASDFHRKRKHHRHYARGER CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH LGRDSRIWRGNDGRYYCRKDNGTTGLLIGGAVGGLAGHEIAGDGDKLLGTVLGAAGGALL CCCCCCEEECCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHH GREIDRDKYRCR CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA