| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486865
Identifier: 103486865
GI number: 103486865
Start: 1435298
End: 1435786
Strand: Direct
Name: 103486865
Synonym: Sala_1379
Alternate gene names: NA
Gene position: 1435298-1435786 (Clockwise)
Preceding gene: 103486857
Following gene: 103486869
Centisome position: 42.91
GC content: 66.67
Gene sequence:
>489_bases TTGCCAGCATGGTGCAAGACTGGGGCAAAGCCAAGCCGCTTGCCGACAGGCTGGTCGCTGCCGGGGGAGGTCGCATTGTT TCTCCGAATTGTCCTGGCGCTCGGCGCCTTTATCGCCGTGCCGTCGCTCGCCGCCGCGCCATCCGCCCTCGCGGGCCGCT GGAAAACCGACGACGGCAAAGGGATCGTGGTGATGAGCCCATGCGGCGCAAAGATGTGCGGCCATATCGAGCGGCTGCTC ATCAAACAGCCCGCGGGCGGCCAGCTCGACGAGCGCAACCCCGACAAGACCAAGCGCGGCCGCCAGGTAACGGGCCTGCG CATCTATTGGGATCTCGCCCCGCACGGCGACGGCTGGAAAGGGCAGGGCTACAGCCCCGAGGACGGCCGCTATTACAAGG CGCATCTGAGCGTGAAGGGCGACCGGATGACCATGAAGGGCTGCGTCGCGGTCTTCTGCCGCACGGTGACTTGGACGCGC GTGGGGTAA
Upstream 100 bases:
>100_bases TGACGCTGATCGTTCTGGCGGATGCAGGCATCGCCAGCGCGAGCGCGGCGCCGAAAGGCACGACGAGATGATGGAATCGC ATCAGACTCTCCCTTGTTTT
Downstream 100 bases:
>100_bases CGCCGCACCTCTCGTTCCGTTCGTGTCGAGCGAAGTCGAGACACCCAACGAACGGGCGCCTAGCCGGAGGGGCATCTCGA CTTCGCTCGATGCGAGCGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 162; Mature: 161
Protein sequence:
>162_residues MPAWCKTGAKPSRLPTGWSLPGEVALFLRIVLALGAFIAVPSLAAAPSALAGRWKTDDGKGIVVMSPCGAKMCGHIERLL IKQPAGGQLDERNPDKTKRGRQVTGLRIYWDLAPHGDGWKGQGYSPEDGRYYKAHLSVKGDRMTMKGCVAVFCRTVTWTR VG
Sequences:
>Translated_162_residues MPAWCKTGAKPSRLPTGWSLPGEVALFLRIVLALGAFIAVPSLAAAPSALAGRWKTDDGKGIVVMSPCGAKMCGHIERLL IKQPAGGQLDERNPDKTKRGRQVTGLRIYWDLAPHGDGWKGQGYSPEDGRYYKAHLSVKGDRMTMKGCVAVFCRTVTWTR VG >Mature_161_residues PAWCKTGAKPSRLPTGWSLPGEVALFLRIVLALGAFIAVPSLAAAPSALAGRWKTDDGKGIVVMSPCGAKMCGHIERLLI KQPAGGQLDERNPDKTKRGRQVTGLRIYWDLAPHGDGWKGQGYSPEDGRYYKAHLSVKGDRMTMKGCVAVFCRTVTWTRV G
Specific function: Unknown
COG id: COG4731
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17566; Mature: 17434
Theoretical pI: Translated: 10.39; Mature: 10.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAWCKTGAKPSRLPTGWSLPGEVALFLRIVLALGAFIAVPSLAAAPSALAGRWKTDDGK CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCHHHCCCCCCCCCC GIVVMSPCGAKMCGHIERLLIKQPAGGQLDERNPDKTKRGRQVTGLRIYWDLAPHGDGWK EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCEEEEEEEEEEECCCCCCCC GQGYSPEDGRYYKAHLSVKGDRMTMKGCVAVFCRTVTWTRVG CCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHEEECC >Mature Secondary Structure PAWCKTGAKPSRLPTGWSLPGEVALFLRIVLALGAFIAVPSLAAAPSALAGRWKTDDGK CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCHHHCCCCCCCCCC GIVVMSPCGAKMCGHIERLLIKQPAGGQLDERNPDKTKRGRQVTGLRIYWDLAPHGDGWK EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCEEEEEEEEEEECCCCCCCC GQGYSPEDGRYYKAHLSVKGDRMTMKGCVAVFCRTVTWTRVG CCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA