| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486869
Identifier: 103486869
GI number: 103486869
Start: 1438928
End: 1439830
Strand: Direct
Name: 103486869
Synonym: Sala_1383
Alternate gene names: NA
Gene position: 1438928-1439830 (Clockwise)
Preceding gene: 103486865
Following gene: 103486879
Centisome position: 43.02
GC content: 64.01
Gene sequence:
>903_bases GTGTGGGCTTTTGCACTGGCAAGATACGCGCCCTGCCCTATATCCGGCCCCATGACCCGCACCATCACCGTTGCCGCGTT GCAGCTTGCCCTGCCCGGCCCCGTCGAACCGAACATCAAGGCTGTCACCGCGCTTGTCGAGGCAGCGGCGGCAAGGGGCG CGCAGATCATCCTGCCACCCGAACTCTTCGAAGGCCCCTATTTCTGCCAGGTCGAGGAAGAGGAGTTGTTCGCCACCGCA CGGCCGACGGCCGAGCATCCGAGCGTCGTCGCGATGCAGGCGCTCGCCGCGAAGTGCAAGGTCGCGATCCCGACGAGCTT TTTCGAACGCGACGGGCATCATTATTACAATACGCTGGCGATGATCGGTCCCGACGGCGGGATCATGGGCACCTACCGCA AGTCGCACATCCCCGACGGGCCGGGTTACGAAGAAAAATATTATTTCCGCCCCGGCAACACCGGCTTCAAGATCTGGGAG GTCTTCGACACCCGCATCGGCGTCGGCGTCTGCTGGGACCAATGGTATCCCGAATGCGCGCGCGCGATGGCGTTGATGGG CGCCGAACTGCTCTTCTACCCGACGGCGATCGGCAGCGAACCCTATGACGCCGACCTCGACACCAGCCGTATGTGGCGCC GCGCGATGCAGGGTCATGCCGTGTCGAACTGTATGCCCGTCATCGCAGCGAACCGCATCGGAACGGAGGGCGACGCGCGT TTCTATGGCCACAGCTTCATCGCCGACGAATGGGGCGATCTGACGCAGGCGTTTGGCGCCAGCGAAACGGGTGCGCTCGT CGAGACGATCGACCTCGACCGCGCGGCAAAGCATCGTGCGGGGATGGGGTTTTTCCGCGACCGGCGACCACAGCTTTACG GGCGGCTCGTCGAAGACGTCTGA
Upstream 100 bases:
>100_bases TTTGTCGACATGTTGAAAGAACCGCGGCGAAGGCAGGCACAGCCGGGGCATGTAGGACAGTGCTTTTTTGGGCGGCGGAC GACCGGGATGACGGGAGGGG
Downstream 100 bases:
>100_bases CGGCGATCAGGCCTCGAAGCGGCGGATGCTTTCGAGGTCGGCGCGGTCGAGCGGCTGCGTCAGCCACAACCCGCCGCGCC CCTCACGCGACCAGCGCACA
Product: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
Products: NA
Alternate protein names: D-N-alpha-carbamilase [H]
Number of amino acids: Translated: 300; Mature: 300
Protein sequence:
>300_residues MWAFALARYAPCPISGPMTRTITVAALQLALPGPVEPNIKAVTALVEAAAARGAQIILPPELFEGPYFCQVEEEELFATA RPTAEHPSVVAMQALAAKCKVAIPTSFFERDGHHYYNTLAMIGPDGGIMGTYRKSHIPDGPGYEEKYYFRPGNTGFKIWE VFDTRIGVGVCWDQWYPECARAMALMGAELLFYPTAIGSEPYDADLDTSRMWRRAMQGHAVSNCMPVIAANRIGTEGDAR FYGHSFIADEWGDLTQAFGASETGALVETIDLDRAAKHRAGMGFFRDRRPQLYGRLVEDV
Sequences:
>Translated_300_residues MWAFALARYAPCPISGPMTRTITVAALQLALPGPVEPNIKAVTALVEAAAARGAQIILPPELFEGPYFCQVEEEELFATA RPTAEHPSVVAMQALAAKCKVAIPTSFFERDGHHYYNTLAMIGPDGGIMGTYRKSHIPDGPGYEEKYYFRPGNTGFKIWE VFDTRIGVGVCWDQWYPECARAMALMGAELLFYPTAIGSEPYDADLDTSRMWRRAMQGHAVSNCMPVIAANRIGTEGDAR FYGHSFIADEWGDLTQAFGASETGALVETIDLDRAAKHRAGMGFFRDRRPQLYGRLVEDV >Mature_300_residues MWAFALARYAPCPISGPMTRTITVAALQLALPGPVEPNIKAVTALVEAAAARGAQIILPPELFEGPYFCQVEEEELFATA RPTAEHPSVVAMQALAAKCKVAIPTSFFERDGHHYYNTLAMIGPDGGIMGTYRKSHIPDGPGYEEKYYFRPGNTGFKIWE VFDTRIGVGVCWDQWYPECARAMALMGAELLFYPTAIGSEPYDADLDTSRMWRRAMQGHAVSNCMPVIAANRIGTEGDAR FYGHSFIADEWGDLTQAFGASETGALVETIDLDRAAKHRAGMGFFRDRRPQLYGRLVEDV
Specific function: The enzyme catalyzes the hydrolysis of N-carbamoyl-D- amino acids to the corresponding which are useful intermediates in the preparation of beta-lactam antibiotics. Industrial production of beta-lactam antibiotics is now being developed using this enzyme
COG id: COG0388
COG function: function code R; Predicted amidohydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 CN hydrolase domain [H]
Homologues:
Organism=Homo sapiens, GI9910460, Length=285, Percent_Identity=29.4736842105263, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI7706509, Length=305, Percent_Identity=27.5409836065574, Blast_Score=104, Evalue=1e-22, Organism=Homo sapiens, GI297632350, Length=296, Percent_Identity=28.3783783783784, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI5031947, Length=296, Percent_Identity=28.3783783783784, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI297632348, Length=296, Percent_Identity=28.3783783783784, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17533173, Length=312, Percent_Identity=27.8846153846154, Blast_Score=110, Evalue=7e-25, Organism=Caenorhabditis elegans, GI17556280, Length=281, Percent_Identity=25.6227758007117, Blast_Score=75, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6323383, Length=294, Percent_Identity=24.4897959183673, Blast_Score=76, Evalue=5e-15, Organism=Drosophila melanogaster, GI21358471, Length=305, Percent_Identity=28.8524590163934, Blast_Score=108, Evalue=4e-24, Organism=Drosophila melanogaster, GI21355835, Length=287, Percent_Identity=26.1324041811847, Blast_Score=77, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003010 [H]
Pfam domain/function: PF00795 CN_hydrolase [H]
EC number: =3.5.1.77 [H]
Molecular weight: Translated: 33084; Mature: 33084
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: PS50263 CN_HYDROLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWAFALARYAPCPISGPMTRTITVAALQLALPGPVEPNIKAVTALVEAAAARGAQIILPP CCHHHHHHCCCCCCCCCCHHHEEEEEHEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECH ELFEGPYFCQVEEEELFATARPTAEHPSVVAMQALAAKCKVAIPTSFFERDGHHYYNTLA HHHCCCEEEEECHHHHHEECCCCCCCCHHHHHHHHHHHCEEECCHHHHHCCCCEEEEEEE MIGPDGGIMGTYRKSHIPDGPGYEEKYYFRPGNTGFKIWEVFDTRIGVGVCWDQWYPECA EECCCCCEEECCHHCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCEEEHHHHHHHHH RAMALMGAELLFYPTAIGSEPYDADLDTSRMWRRAMQGHAVSNCMPVIAANRIGTEGDAR HHHHHHCCHHEEEEHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCE FYGHSFIADEWGDLTQAFGASETGALVETIDLDRAAKHRAGMGFFRDRRPQLYGRLVEDV EECCHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHCCCCHHHCCCHHHHHHHHHCC >Mature Secondary Structure MWAFALARYAPCPISGPMTRTITVAALQLALPGPVEPNIKAVTALVEAAAARGAQIILPP CCHHHHHHCCCCCCCCCCHHHEEEEEHEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECH ELFEGPYFCQVEEEELFATARPTAEHPSVVAMQALAAKCKVAIPTSFFERDGHHYYNTLA HHHCCCEEEEECHHHHHEECCCCCCCCHHHHHHHHHHHCEEECCHHHHHCCCCEEEEEEE MIGPDGGIMGTYRKSHIPDGPGYEEKYYFRPGNTGFKIWEVFDTRIGVGVCWDQWYPECA EECCCCCEEECCHHCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCEEEHHHHHHHHH RAMALMGAELLFYPTAIGSEPYDADLDTSRMWRRAMQGHAVSNCMPVIAANRIGTEGDAR HHHHHHCCHHEEEEHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCE FYGHSFIADEWGDLTQAFGASETGALVETIDLDRAAKHRAGMGFFRDRRPQLYGRLVEDV EECCHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHCCCCHHHCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9648217; 10903946 [H]