| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486850
Identifier: 103486850
GI number: 103486850
Start: 1420893
End: 1421360
Strand: Direct
Name: 103486850
Synonym: Sala_1364
Alternate gene names: NA
Gene position: 1420893-1421360 (Clockwise)
Preceding gene: 103486849
Following gene: 103486857
Centisome position: 42.48
GC content: 68.38
Gene sequence:
>468_bases ATGCCCCCCATCCGCCGCGCCTTTTTTGTCGTCGCCGCCTCCGCCGCCGCCATCGGCACCGCGCACGCCGCGAACCCGGT GATGTTCCGCGACGCGGGCTGCGGCTGCTGCCTCAAATGGCTGGAACAGGTGAAGGCATCGTTCGGGCGCAAGGTCACGG TCGTCAACTCGGCCGACATGGCGGCGGTCAAGGACAAGCAGGGCGTGCCGCCGACGCTGCGAAGCTGCCACACGGTGCTC GTCGGCGGCTATGTCATCGAGGGTCATGTGCCCGCGAAGGAGATCGCCCGCCTGCTCCGCGAAAAGCCGAAGGGGGTAAA GGGACTCGCGGTCGGCGGGATGCCCATCGGCTCGCCCGGCATGGAACATGGCGATCACCGCGAAGCCTATAAAGTGATGA CCTTCGGCCCCGGCGGCCAGCGCGTCTACGCGAGCTATGCCGCAAGCGGCGGCGCACACGCGCACTGA
Upstream 100 bases:
>100_bases CACAAGGTCGGCAAGGACATCCTCTATCCGATGGGCTGATCGCCTTGCGCCGCGAGCCACGGCCGCTATTCTGGCGCTAT CAGAACCAAGGAGTTTCCGC
Downstream 100 bases:
>100_bases GCCTTTTTGTCAACCCGGCCTTCGCCGGGACGACAATATGTTTTCAAAGCGAAACTTTACAAACTCGCCTTGAACAGCGC GAGTTGGCGGCTCCACGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 155; Mature: 154
Protein sequence:
>155_residues MPPIRRAFFVVAASAAAIGTAHAANPVMFRDAGCGCCLKWLEQVKASFGRKVTVVNSADMAAVKDKQGVPPTLRSCHTVL VGGYVIEGHVPAKEIARLLREKPKGVKGLAVGGMPIGSPGMEHGDHREAYKVMTFGPGGQRVYASYAASGGAHAH
Sequences:
>Translated_155_residues MPPIRRAFFVVAASAAAIGTAHAANPVMFRDAGCGCCLKWLEQVKASFGRKVTVVNSADMAAVKDKQGVPPTLRSCHTVL VGGYVIEGHVPAKEIARLLREKPKGVKGLAVGGMPIGSPGMEHGDHREAYKVMTFGPGGQRVYASYAASGGAHAH >Mature_154_residues PPIRRAFFVVAASAAAIGTAHAANPVMFRDAGCGCCLKWLEQVKASFGRKVTVVNSADMAAVKDKQGVPPTLRSCHTVLV GGYVIEGHVPAKEIARLLREKPKGVKGLAVGGMPIGSPGMEHGDHREAYKVMTFGPGGQRVYASYAASGGAHAH
Specific function: Unknown
COG id: COG3019
COG function: function code R; Predicted metal-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16193; Mature: 16062
Theoretical pI: Translated: 10.17; Mature: 10.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPIRRAFFVVAASAAAIGTAHAANPVMFRDAGCGCCLKWLEQVKASFGRKVTVVNSADM CCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCEEEEEECCCH AAVKDKQGVPPTLRSCHTVLVGGYVIEGHVPAKEIARLLREKPKGVKGLAVGGMPIGSPG HHHCCCCCCCHHHHHHHHHEECCEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCC MEHGDHREAYKVMTFGPGGQRVYASYAASGGAHAH CCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCC >Mature Secondary Structure PPIRRAFFVVAASAAAIGTAHAANPVMFRDAGCGCCLKWLEQVKASFGRKVTVVNSADM CCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCEEEEEECCCH AAVKDKQGVPPTLRSCHTVLVGGYVIEGHVPAKEIARLLREKPKGVKGLAVGGMPIGSPG HHHCCCCCCCHHHHHHHHHEECCEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCC MEHGDHREAYKVMTFGPGGQRVYASYAASGGAHAH CCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA