| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486775
Identifier: 103486775
GI number: 103486775
Start: 1347013
End: 1348293
Strand: Reverse
Name: 103486775
Synonym: Sala_1289
Alternate gene names: NA
Gene position: 1348293-1347013 (Counterclockwise)
Preceding gene: 103486776
Following gene: 103486773
Centisome position: 40.31
GC content: 64.95
Gene sequence:
>1281_bases ATGTTCAAGCGTTTCCGCTCGATGCCCGCAACGGCGATGGCCGCCGTGCTGGGCTGCGCGCTGATGACAACCGCGACCCC CGCCGCGGCGCAGAAGAAGCCCAAGAAGGAAGAGGCCGCCAAGGGCAAGTCGCTCAGCCCCAGCAAGGGTTTCGCCCCGG CGCTCAAAAAGATGACCGACGCGACCGCGGCCAAGGATGCCGCAGCGTTGCAGGCGGCCATGGCTGAGGGGCAGGCGAGC GCGACCTCGCCCGACGACCAATATCTCCTCTCCTTCTATCAGTTGCAGCTCGGCATCCTGAACAAGGACACGGCGCTGCA GGGCCAGGGGCTCGACGGGATGATTGATTCGGGGCTGACCCCACCGGAAAATCTCGCGACCTATAACTTTTATTCGGGCA ATTTCGCTTATGGCGCCAAAAATTACGCCAAGGCGATCCAGCGCCTCGAAGCTGCCAAGGCTGCGGGTTCGACCGAGCCG GCCCTGGCGGCGATCCTGATGGACAGCTATCTGAACGCGGGGCAGATCGACCAGGGCTGGGCGATCGCCAAGGCCGGCAT CGATGCGGCGCGTGCCGCCGGAACGAAGCCGTCAGAGGATCTTTATGTCCGTCCGGCGCAGGCTTTCCAGAAAGCCAACC GAACCAACGAGATGCTCGACGTTCTGACGATGCGTGTCGAAGATTATCCCTCGCCCGCGACATGGCGCAATACGCTCTAT ATCCTGTTGCAGCAGTCGGGTGGCGACAAGGAGCTCAACCTCGACATCCTGCGCCTGATGCGCGCGACCAATGCGATGAC TCAGCGCCCGGAGTATCTGGAATACTCGGCCCTTGCGGTCGAGGCAGGCTATCCGGGTGAAGCCATCGCCGTGATCCGTC AGGGGCAGAATAACGGGGTGATTCCAAAGGGTGACACCCATTTCGGCAACATTCTCGAAACACAGACGCCTCGCGCGGCC GCCGACGCCGCCGCGGTCGCCGCCGACGCGAACAAGGCCGCGACGCTGAACAATCCCAAGGCCGCGCGGTCGACCGCCGA TGTGCTGGTCGGAATCGGCCAGCCCGCGAAAGCGATCCCGCTTTATGAAGCCGCGCTGAAGGCGGCGCCGAACGACGCGA TCGCGCAGTTCCGCCTGGGCGTGGCGCAGGCGCTCGCCGGACAGGTCGATGCCGCCGCGGCGAGTTTTGCCAAGATCCAG GGCAATCGGGCGCGATTGGCGCAGCTGTGGGCGGTGCGCGCCAAAACCGGTGCCGCACCCGCGCCGGCCACCGCCAGCTG A
Upstream 100 bases:
>100_bases GTCTTGCCATGGCAACGCGACCGGTTTAGCCGCGTTAACGACACGCGGCCGAATGCGCCTGCGCGGCGGACGGTCCACGA GTTTCAGAGGAGAGAGTTCG
Downstream 100 bases:
>100_bases CCGAAGCGCATATTCCGGAAAAAAGGGCGCCGTTCCAGGAACGGCGCCCTTTTCGATGACCTGGCGAATCAGATTTCGAC CGGAACGCCCGCCAGCTGTT
Product: tetratricopeptide TPR_2
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 426; Mature: 426
Protein sequence:
>426_residues MFKRFRSMPATAMAAVLGCALMTTATPAAAQKKPKKEEAAKGKSLSPSKGFAPALKKMTDATAAKDAAALQAAMAEGQAS ATSPDDQYLLSFYQLQLGILNKDTALQGQGLDGMIDSGLTPPENLATYNFYSGNFAYGAKNYAKAIQRLEAAKAAGSTEP ALAAILMDSYLNAGQIDQGWAIAKAGIDAARAAGTKPSEDLYVRPAQAFQKANRTNEMLDVLTMRVEDYPSPATWRNTLY ILLQQSGGDKELNLDILRLMRATNAMTQRPEYLEYSALAVEAGYPGEAIAVIRQGQNNGVIPKGDTHFGNILETQTPRAA ADAAAVAADANKAATLNNPKAARSTADVLVGIGQPAKAIPLYEAALKAAPNDAIAQFRLGVAQALAGQVDAAAASFAKIQ GNRARLAQLWAVRAKTGAAPAPATAS
Sequences:
>Translated_426_residues MFKRFRSMPATAMAAVLGCALMTTATPAAAQKKPKKEEAAKGKSLSPSKGFAPALKKMTDATAAKDAAALQAAMAEGQAS ATSPDDQYLLSFYQLQLGILNKDTALQGQGLDGMIDSGLTPPENLATYNFYSGNFAYGAKNYAKAIQRLEAAKAAGSTEP ALAAILMDSYLNAGQIDQGWAIAKAGIDAARAAGTKPSEDLYVRPAQAFQKANRTNEMLDVLTMRVEDYPSPATWRNTLY ILLQQSGGDKELNLDILRLMRATNAMTQRPEYLEYSALAVEAGYPGEAIAVIRQGQNNGVIPKGDTHFGNILETQTPRAA ADAAAVAADANKAATLNNPKAARSTADVLVGIGQPAKAIPLYEAALKAAPNDAIAQFRLGVAQALAGQVDAAAASFAKIQ GNRARLAQLWAVRAKTGAAPAPATAS >Mature_426_residues MFKRFRSMPATAMAAVLGCALMTTATPAAAQKKPKKEEAAKGKSLSPSKGFAPALKKMTDATAAKDAAALQAAMAEGQAS ATSPDDQYLLSFYQLQLGILNKDTALQGQGLDGMIDSGLTPPENLATYNFYSGNFAYGAKNYAKAIQRLEAAKAAGSTEP ALAAILMDSYLNAGQIDQGWAIAKAGIDAARAAGTKPSEDLYVRPAQAFQKANRTNEMLDVLTMRVEDYPSPATWRNTLY ILLQQSGGDKELNLDILRLMRATNAMTQRPEYLEYSALAVEAGYPGEAIAVIRQGQNNGVIPKGDTHFGNILETQTPRAA ADAAAVAADANKAATLNNPKAARSTADVLVGIGQPAKAIPLYEAALKAAPNDAIAQFRLGVAQALAGQVDAAAASFAKIQ GNRARLAQLWAVRAKTGAAPAPATAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44564; Mature: 44564
Theoretical pI: Translated: 9.62; Mature: 9.62
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKRFRSMPATAMAAVLGCALMTTATPAAAQKKPKKEEAAKGKSLSPSKGFAPALKKMTD CCCHHHCCCHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHH ATAAKDAAALQAAMAEGQASATSPDDQYLLSFYQLQLGILNKDTALQGQGLDGMIDSGLT HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC PPENLATYNFYSGNFAYGAKNYAKAIQRLEAAKAAGSTEPALAAILMDSYLNAGQIDQGW CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC AIAKAGIDAARAAGTKPSEDLYVRPAQAFQKANRTNEMLDVLTMRVEDYPSPATWRNTLY CHHHHCCHHHHHCCCCCCCCEEECCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEEE ILLQQSGGDKELNLDILRLMRATNAMTQRPEYLEYSALAVEAGYPGEAIAVIRQGQNNGV EEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCEEEEEECCCCCCEEEEEEECCCCCC IPKGDTHFGNILETQTPRAAADAAAVAADANKAATLNNPKAARSTADVLVGIGQPAKAIP CCCCCCCCCCHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEEECCCCCCHHH LYEAALKAAPNDAIAQFRLGVAQALAGQVDAAAASFAKIQGNRARLAQLWAVRAKTGAAP HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC APATAS CCCCCC >Mature Secondary Structure MFKRFRSMPATAMAAVLGCALMTTATPAAAQKKPKKEEAAKGKSLSPSKGFAPALKKMTD CCCHHHCCCHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHH ATAAKDAAALQAAMAEGQASATSPDDQYLLSFYQLQLGILNKDTALQGQGLDGMIDSGLT HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC PPENLATYNFYSGNFAYGAKNYAKAIQRLEAAKAAGSTEPALAAILMDSYLNAGQIDQGW CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC AIAKAGIDAARAAGTKPSEDLYVRPAQAFQKANRTNEMLDVLTMRVEDYPSPATWRNTLY CHHHHCCHHHHHCCCCCCCCEEECCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEEE ILLQQSGGDKELNLDILRLMRATNAMTQRPEYLEYSALAVEAGYPGEAIAVIRQGQNNGV EEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCEEEEEECCCCCCEEEEEEECCCCCC IPKGDTHFGNILETQTPRAAADAAAVAADANKAATLNNPKAARSTADVLVGIGQPAKAIP CCCCCCCCCCHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEEECCCCCCHHH LYEAALKAAPNDAIAQFRLGVAQALAGQVDAAAASFAKIQGNRARLAQLWAVRAKTGAAP HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC APATAS CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA