Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486751

Identifier: 103486751

GI number: 103486751

Start: 1318255

End: 1319457

Strand: Direct

Name: 103486751

Synonym: Sala_1265

Alternate gene names: NA

Gene position: 1318255-1319457 (Clockwise)

Preceding gene: 103486750

Following gene: 103486752

Centisome position: 39.41

GC content: 66.0

Gene sequence:

>1203_bases
ATGACCCGCACCCTCATCCTTTTGCTGGCGCTCGCGCCGGCCGGGGCGGCACATGCCCAGGCCGTCGAGCTAGAGCCGGT
TGGCGAAGCCCGCCTCCGCTACGAAAACGTCGATCAGGACGGCCTCGCCGCCAATGCCGAAGCCCTCACCCTGCGCGTCC
GCGCCGGGGTCGAGGCCAAGGCGGGGCGCTGGTCGGCGCTGGTCGAAGGGCAAGGCAATCTCGCCATCATCGACGATTAT
TTCGACGGGCTCCACGGCGCCGCGACCCGGCCAATCATCGCCGACCCCGAAAACATCGCCCTCGCCCGCGCGCAGCTTCG
CTATGCCGCGCCCGCCATTACGGTGACCGCGGGGCGCCAGCGGATCGGCTTCGACGACGAGCGTTTCGTCGGCAGCGTCG
GCTTTCGTCAGAACGGCCAGAGCTATGACGCGGTGCGCGCTGAGGTGACGCCGGTGAAGGGCGTGAAGGTCGATCTCGCC
TATGCGTGGAGCGTGCGCACCATCTGGGGCATCGACGGTGCCGGGGCGCGGCAACAGGCAGTGTCGGGCGACAATCTCTT
CGCCAATGTCGGCGCCCGGACCCCCGTCGGCAAGCTCAGCGCCTTCGCCTATCTGGTCGACCAGGACGAAGCGGAGATGC
AGGGTTTCCGCATGTCGAGCCAGAGCTATGGCGCCCGGCTCGATGGATCGAAGTCGCTCGGCAAGGCGAAGATCGGCTGG
CAGCTGAGCTATGCCCGCCAGTCCGACTGGCACCATAACCCCAACGACTATAGCGCCGACTATTATCTGGCCGATGTTGC
CGTCGATTTCGGCGGCCCCCGCGTCGGCGCCGGGTACGAGATACTCGGCGCCAACAAGGGGATTTCGCTCACCAGTTTCC
AGACCCCGCTTGCCACCGGCTTCAAATTTCAGGGCTGGGCCGACAAGTTCCTCGTCACCCCGCCCGACGGGGTCCGCGAC
CTGTATGCCAGCGCGGGCTGGAGCTGGAAGGCGGTCGGCCCGCTGAAAGCCGTTACCGTGCAGGCCGCCTATCACGACTA
TCGCAGCGACCGCGCATCGCGCGCCTATGGGGACGAGATCGACCTGCTCGCCAGCGCCAAGCTGGGCAAGATCACCGGTT
CGTTACGTTACGCGCATTATCGAGCCAACAGCTTCGCCACCGGTACCGATAAAATCTGGCTGCAATTCGATTGGACGCTT
TGA

Upstream 100 bases:

>100_bases
TCTTCGCCGGGCTTGCCGTTGCCGCGCTCATCGCCCTGATGTTTGTCAAGAATCAGTGGCGCGCAACCTGGGGCGCCGCC
GAAGGCGTACGGATCTAGCC

Downstream 100 bases:

>100_bases
TGGAACATCGCCCCCTCTCCCCCGACGCCGACACGCGCGCGCATCTCGTCGTCATCGGCAACGGCATGGCCGGATGCCGC
GCGGTCGAGGAGCTGCTCGC

Product: putative lipoprotein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MTRTLILLLALAPAGAAHAQAVELEPVGEARLRYENVDQDGLAANAEALTLRVRAGVEAKAGRWSALVEGQGNLAIIDDY
FDGLHGAATRPIIADPENIALARAQLRYAAPAITVTAGRQRIGFDDERFVGSVGFRQNGQSYDAVRAEVTPVKGVKVDLA
YAWSVRTIWGIDGAGARQQAVSGDNLFANVGARTPVGKLSAFAYLVDQDEAEMQGFRMSSQSYGARLDGSKSLGKAKIGW
QLSYARQSDWHHNPNDYSADYYLADVAVDFGGPRVGAGYEILGANKGISLTSFQTPLATGFKFQGWADKFLVTPPDGVRD
LYASAGWSWKAVGPLKAVTVQAAYHDYRSDRASRAYGDEIDLLASAKLGKITGSLRYAHYRANSFATGTDKIWLQFDWTL

Sequences:

>Translated_400_residues
MTRTLILLLALAPAGAAHAQAVELEPVGEARLRYENVDQDGLAANAEALTLRVRAGVEAKAGRWSALVEGQGNLAIIDDY
FDGLHGAATRPIIADPENIALARAQLRYAAPAITVTAGRQRIGFDDERFVGSVGFRQNGQSYDAVRAEVTPVKGVKVDLA
YAWSVRTIWGIDGAGARQQAVSGDNLFANVGARTPVGKLSAFAYLVDQDEAEMQGFRMSSQSYGARLDGSKSLGKAKIGW
QLSYARQSDWHHNPNDYSADYYLADVAVDFGGPRVGAGYEILGANKGISLTSFQTPLATGFKFQGWADKFLVTPPDGVRD
LYASAGWSWKAVGPLKAVTVQAAYHDYRSDRASRAYGDEIDLLASAKLGKITGSLRYAHYRANSFATGTDKIWLQFDWTL
>Mature_399_residues
TRTLILLLALAPAGAAHAQAVELEPVGEARLRYENVDQDGLAANAEALTLRVRAGVEAKAGRWSALVEGQGNLAIIDDYF
DGLHGAATRPIIADPENIALARAQLRYAAPAITVTAGRQRIGFDDERFVGSVGFRQNGQSYDAVRAEVTPVKGVKVDLAY
AWSVRTIWGIDGAGARQQAVSGDNLFANVGARTPVGKLSAFAYLVDQDEAEMQGFRMSSQSYGARLDGSKSLGKAKIGWQ
LSYARQSDWHHNPNDYSADYYLADVAVDFGGPRVGAGYEILGANKGISLTSFQTPLATGFKFQGWADKFLVTPPDGVRDL
YASAGWSWKAVGPLKAVTVQAAYHDYRSDRASRAYGDEIDLLASAKLGKITGSLRYAHYRANSFATGTDKIWLQFDWTL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43220; Mature: 43089

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTLILLLALAPAGAAHAQAVELEPVGEARLRYENVDQDGLAANAEALTLRVRAGVEAK
CCHHEEEEEECCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCEEEEEEEECCCCCC
AGRWSALVEGQGNLAIIDDYFDGLHGAATRPIIADPENIALARAQLRYAAPAITVTAGRQ
CCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEECCCCHHHHHHHHHHCCCEEEEECCCC
RIGFDDERFVGSVGFRQNGQSYDAVRAEVTPVKGVKVDLAYAWSVRTIWGIDGAGARQQA
CCCCCHHHHEECCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEEEEEEECCCCCCCHHHH
VSGDNLFANVGARTPVGKLSAFAYLVDQDEAEMQGFRMSSQSYGARLDGSKSLGKAKIGW
CCCCCEEEECCCCCCCHHHEEEEEEECCCCHHHHCEEECCCCCCCCCCCCCCCCCEEECE
QLSYARQSDWHHNPNDYSADYYLADVAVDFGGPRVGAGYEILGANKGISLTSFQTPLATG
EEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCHHCC
FKFQGWADKFLVTPPDGVRDLYASAGWSWKAVGPLKAVTVQAAYHDYRSDRASRAYGDEI
EEECCCCCCEEECCCCHHHHHHHHCCCCEEECCCEEEEEEEEHHHHHHCCCCCCCCCCCE
DLLASAKLGKITGSLRYAHYRANSFATGTDKIWLQFDWTL
EEEECCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECC
>Mature Secondary Structure 
TRTLILLLALAPAGAAHAQAVELEPVGEARLRYENVDQDGLAANAEALTLRVRAGVEAK
CHHEEEEEECCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCEEEEEEEECCCCCC
AGRWSALVEGQGNLAIIDDYFDGLHGAATRPIIADPENIALARAQLRYAAPAITVTAGRQ
CCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEECCCCHHHHHHHHHHCCCEEEEECCCC
RIGFDDERFVGSVGFRQNGQSYDAVRAEVTPVKGVKVDLAYAWSVRTIWGIDGAGARQQA
CCCCCHHHHEECCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEEEEEEECCCCCCCHHHH
VSGDNLFANVGARTPVGKLSAFAYLVDQDEAEMQGFRMSSQSYGARLDGSKSLGKAKIGW
CCCCCEEEECCCCCCCHHHEEEEEEECCCCHHHHCEEECCCCCCCCCCCCCCCCCEEECE
QLSYARQSDWHHNPNDYSADYYLADVAVDFGGPRVGAGYEILGANKGISLTSFQTPLATG
EEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCHHCC
FKFQGWADKFLVTPPDGVRDLYASAGWSWKAVGPLKAVTVQAAYHDYRSDRASRAYGDEI
EEECCCCCCEEECCCCHHHHHHHHCCCCEEECCCEEEEEEEEHHHHHHCCCCCCCCCCCE
DLLASAKLGKITGSLRYAHYRANSFATGTDKIWLQFDWTL
EEEECCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA