| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486751
Identifier: 103486751
GI number: 103486751
Start: 1318255
End: 1319457
Strand: Direct
Name: 103486751
Synonym: Sala_1265
Alternate gene names: NA
Gene position: 1318255-1319457 (Clockwise)
Preceding gene: 103486750
Following gene: 103486752
Centisome position: 39.41
GC content: 66.0
Gene sequence:
>1203_bases ATGACCCGCACCCTCATCCTTTTGCTGGCGCTCGCGCCGGCCGGGGCGGCACATGCCCAGGCCGTCGAGCTAGAGCCGGT TGGCGAAGCCCGCCTCCGCTACGAAAACGTCGATCAGGACGGCCTCGCCGCCAATGCCGAAGCCCTCACCCTGCGCGTCC GCGCCGGGGTCGAGGCCAAGGCGGGGCGCTGGTCGGCGCTGGTCGAAGGGCAAGGCAATCTCGCCATCATCGACGATTAT TTCGACGGGCTCCACGGCGCCGCGACCCGGCCAATCATCGCCGACCCCGAAAACATCGCCCTCGCCCGCGCGCAGCTTCG CTATGCCGCGCCCGCCATTACGGTGACCGCGGGGCGCCAGCGGATCGGCTTCGACGACGAGCGTTTCGTCGGCAGCGTCG GCTTTCGTCAGAACGGCCAGAGCTATGACGCGGTGCGCGCTGAGGTGACGCCGGTGAAGGGCGTGAAGGTCGATCTCGCC TATGCGTGGAGCGTGCGCACCATCTGGGGCATCGACGGTGCCGGGGCGCGGCAACAGGCAGTGTCGGGCGACAATCTCTT CGCCAATGTCGGCGCCCGGACCCCCGTCGGCAAGCTCAGCGCCTTCGCCTATCTGGTCGACCAGGACGAAGCGGAGATGC AGGGTTTCCGCATGTCGAGCCAGAGCTATGGCGCCCGGCTCGATGGATCGAAGTCGCTCGGCAAGGCGAAGATCGGCTGG CAGCTGAGCTATGCCCGCCAGTCCGACTGGCACCATAACCCCAACGACTATAGCGCCGACTATTATCTGGCCGATGTTGC CGTCGATTTCGGCGGCCCCCGCGTCGGCGCCGGGTACGAGATACTCGGCGCCAACAAGGGGATTTCGCTCACCAGTTTCC AGACCCCGCTTGCCACCGGCTTCAAATTTCAGGGCTGGGCCGACAAGTTCCTCGTCACCCCGCCCGACGGGGTCCGCGAC CTGTATGCCAGCGCGGGCTGGAGCTGGAAGGCGGTCGGCCCGCTGAAAGCCGTTACCGTGCAGGCCGCCTATCACGACTA TCGCAGCGACCGCGCATCGCGCGCCTATGGGGACGAGATCGACCTGCTCGCCAGCGCCAAGCTGGGCAAGATCACCGGTT CGTTACGTTACGCGCATTATCGAGCCAACAGCTTCGCCACCGGTACCGATAAAATCTGGCTGCAATTCGATTGGACGCTT TGA
Upstream 100 bases:
>100_bases TCTTCGCCGGGCTTGCCGTTGCCGCGCTCATCGCCCTGATGTTTGTCAAGAATCAGTGGCGCGCAACCTGGGGCGCCGCC GAAGGCGTACGGATCTAGCC
Downstream 100 bases:
>100_bases TGGAACATCGCCCCCTCTCCCCCGACGCCGACACGCGCGCGCATCTCGTCGTCATCGGCAACGGCATGGCCGGATGCCGC GCGGTCGAGGAGCTGCTCGC
Product: putative lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 400; Mature: 399
Protein sequence:
>400_residues MTRTLILLLALAPAGAAHAQAVELEPVGEARLRYENVDQDGLAANAEALTLRVRAGVEAKAGRWSALVEGQGNLAIIDDY FDGLHGAATRPIIADPENIALARAQLRYAAPAITVTAGRQRIGFDDERFVGSVGFRQNGQSYDAVRAEVTPVKGVKVDLA YAWSVRTIWGIDGAGARQQAVSGDNLFANVGARTPVGKLSAFAYLVDQDEAEMQGFRMSSQSYGARLDGSKSLGKAKIGW QLSYARQSDWHHNPNDYSADYYLADVAVDFGGPRVGAGYEILGANKGISLTSFQTPLATGFKFQGWADKFLVTPPDGVRD LYASAGWSWKAVGPLKAVTVQAAYHDYRSDRASRAYGDEIDLLASAKLGKITGSLRYAHYRANSFATGTDKIWLQFDWTL
Sequences:
>Translated_400_residues MTRTLILLLALAPAGAAHAQAVELEPVGEARLRYENVDQDGLAANAEALTLRVRAGVEAKAGRWSALVEGQGNLAIIDDY FDGLHGAATRPIIADPENIALARAQLRYAAPAITVTAGRQRIGFDDERFVGSVGFRQNGQSYDAVRAEVTPVKGVKVDLA YAWSVRTIWGIDGAGARQQAVSGDNLFANVGARTPVGKLSAFAYLVDQDEAEMQGFRMSSQSYGARLDGSKSLGKAKIGW QLSYARQSDWHHNPNDYSADYYLADVAVDFGGPRVGAGYEILGANKGISLTSFQTPLATGFKFQGWADKFLVTPPDGVRD LYASAGWSWKAVGPLKAVTVQAAYHDYRSDRASRAYGDEIDLLASAKLGKITGSLRYAHYRANSFATGTDKIWLQFDWTL >Mature_399_residues TRTLILLLALAPAGAAHAQAVELEPVGEARLRYENVDQDGLAANAEALTLRVRAGVEAKAGRWSALVEGQGNLAIIDDYF DGLHGAATRPIIADPENIALARAQLRYAAPAITVTAGRQRIGFDDERFVGSVGFRQNGQSYDAVRAEVTPVKGVKVDLAY AWSVRTIWGIDGAGARQQAVSGDNLFANVGARTPVGKLSAFAYLVDQDEAEMQGFRMSSQSYGARLDGSKSLGKAKIGWQ LSYARQSDWHHNPNDYSADYYLADVAVDFGGPRVGAGYEILGANKGISLTSFQTPLATGFKFQGWADKFLVTPPDGVRDL YASAGWSWKAVGPLKAVTVQAAYHDYRSDRASRAYGDEIDLLASAKLGKITGSLRYAHYRANSFATGTDKIWLQFDWTL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43220; Mature: 43089
Theoretical pI: Translated: 7.18; Mature: 7.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRTLILLLALAPAGAAHAQAVELEPVGEARLRYENVDQDGLAANAEALTLRVRAGVEAK CCHHEEEEEECCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCEEEEEEEECCCCCC AGRWSALVEGQGNLAIIDDYFDGLHGAATRPIIADPENIALARAQLRYAAPAITVTAGRQ CCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEECCCCHHHHHHHHHHCCCEEEEECCCC RIGFDDERFVGSVGFRQNGQSYDAVRAEVTPVKGVKVDLAYAWSVRTIWGIDGAGARQQA CCCCCHHHHEECCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEEEEEEECCCCCCCHHHH VSGDNLFANVGARTPVGKLSAFAYLVDQDEAEMQGFRMSSQSYGARLDGSKSLGKAKIGW CCCCCEEEECCCCCCCHHHEEEEEEECCCCHHHHCEEECCCCCCCCCCCCCCCCCEEECE QLSYARQSDWHHNPNDYSADYYLADVAVDFGGPRVGAGYEILGANKGISLTSFQTPLATG EEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCHHCC FKFQGWADKFLVTPPDGVRDLYASAGWSWKAVGPLKAVTVQAAYHDYRSDRASRAYGDEI EEECCCCCCEEECCCCHHHHHHHHCCCCEEECCCEEEEEEEEHHHHHHCCCCCCCCCCCE DLLASAKLGKITGSLRYAHYRANSFATGTDKIWLQFDWTL EEEECCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECC >Mature Secondary Structure TRTLILLLALAPAGAAHAQAVELEPVGEARLRYENVDQDGLAANAEALTLRVRAGVEAK CHHEEEEEECCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCEEEEEEEECCCCCC AGRWSALVEGQGNLAIIDDYFDGLHGAATRPIIADPENIALARAQLRYAAPAITVTAGRQ CCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEECCCCHHHHHHHHHHCCCEEEEECCCC RIGFDDERFVGSVGFRQNGQSYDAVRAEVTPVKGVKVDLAYAWSVRTIWGIDGAGARQQA CCCCCHHHHEECCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEEEEEEECCCCCCCHHHH VSGDNLFANVGARTPVGKLSAFAYLVDQDEAEMQGFRMSSQSYGARLDGSKSLGKAKIGW CCCCCEEEECCCCCCCHHHEEEEEEECCCCHHHHCEEECCCCCCCCCCCCCCCCCEEECE QLSYARQSDWHHNPNDYSADYYLADVAVDFGGPRVGAGYEILGANKGISLTSFQTPLATG EEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCHHCC FKFQGWADKFLVTPPDGVRDLYASAGWSWKAVGPLKAVTVQAAYHDYRSDRASRAYGDEI EEECCCCCCEEECCCCHHHHHHHHCCCCEEECCCEEEEEEEEHHHHHHCCCCCCCCCCCE DLLASAKLGKITGSLRYAHYRANSFATGTDKIWLQFDWTL EEEECCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA