| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486725
Identifier: 103486725
GI number: 103486725
Start: 1287056
End: 1288390
Strand: Direct
Name: 103486725
Synonym: Sala_1238
Alternate gene names: NA
Gene position: 1287056-1288390 (Clockwise)
Preceding gene: 103486724
Following gene: 103486727
Centisome position: 38.48
GC content: 65.77
Gene sequence:
>1335_bases ATGCAATCCAGAGTGAAGTTGCGCAGCTTTCTGCGGGTTATGCGAATCGGCGGCATCGCGCTTCTGGGCGCAGTGGGCAC GGGCACCGCGGCACAGGAGGCGCCGTCGCAGACGGTCATCACCGCCGCGCGCTACATCGACGTGCTGAGCGGCAAGACGG TCGAGCACCCCGCAATCTTCGTCGGCGCCGATGGCCGCATCACCAATATCGCCGACGCGCGCACCGTCCGCTGGGGTAGC GACGTCAAGCATATCGACCTCGGCGGCAAGACTTTGCTCCCCGGCCTTATCGACATGCACGTCCACCTCGACGGTCCTGC CGACATCGGCGGCTATCGCGGGCTGGAGTTCACCGACAGCTTCTGGGGCATGACCGCCGTCAAGAACGCGAACGACATGC TGAACGCCGGTTTCACGACGGTGCGCAACGTCGGATCGGGCGACCGCAACGACATCGGCCTCAAACAGGCGATCGATTCG GGTTACGCGACCGGCCCGCGCATCGTTCCCGCGGGCTATGCGCTCGGCGCGACCGGCGGGCATTGCGACAGCACTTTCCT CCCTCCCAGCCTGGAAAAAAAGGACGGCAAGGAAGAGGGCATCGGCGACAGCCCCGACGAACTGCGCTATCAGGTGCGCC GCCAGCGCAAATATGGCGCCGAGGTCATCAAGGTGTGCGCGACCGGCGGCGTTTTTTCGCGCAACACCGAGCCGGGGCAG TTGCAGGTGCCCGAGAATGAGCTGCGCGCCATCGCCGACGAGGCACACCAGTGGGGGCTGCGCGTCGCCGCGCACGCGCA TGGCGCGGCGGGCATCCGCGCCGCGATCGCGGCGGGGATCGACACGATCGAACATGCGAGCCTCGTCGACGACGAGGGCA TTCGCATGGCGGTCGCCCGCAAGCAGCCCGTCTGGTTCGCGATGGATATCTACAACACCGAATATACGCAGGCCGAGGGC TCGAAAAACGGCGTGCTTGAGGATAATCTGCGCAAGGATCGCGAGATCGCGCAGATCCAGCGCGACAATTTCAGGAAAGC GCACCGCGCCGGGGTGCGGATGGTGTTCGCGTCCGACGCCGGAGTGATGCCGCACGGTGAGGTCGGCAAGCAGTTCCGCG TCATGGTCGAATATGGAATGACGCCGATACAGGCGATCCAGGCCGCGACGAAAAACGCCGCCGAGGCGCTGGGGCGCGAA AAGGATGTAGGGGCGATTGCCGTGGGGCGCTATGCCGACATCGTCGCGGTCGACGGCGATCCGCTGGCCAATGTGCGCGA GCTGGAAAGCGTCGACGCGGTGGTGAAGGGCGGGGTGCTGGTGAAGGGGGAGTGA
Upstream 100 bases:
>100_bases CTGCACATCTGAGCCTCGATCGCTCCCGCGATTTTCCGCTGTCCTAATCGGTGCTCCTTTGCCATCTAGGCAAAGGGCAC CAACAAGGGACGGTCGCGAT
Downstream 100 bases:
>100_bases ACCTTCGCCCCGCGATGGCGGGGCCCGCCTGAGGCCCTGGTCAACCGCGTTGTGTAAACCGACAGCGGCCCCCGCCTGCG CGGGGGCGACGGATTTTCTT
Product: amidohydrolase
Products: NA
Alternate protein names: Prolidase; Xaa-Pro Dipeptidase; Amidohydrolase Family Protein; Imidazolonepropionase; Secreted Hydrolase; Xaa-Pro Dipeptidase Family; Imidazolonepropionase Related Amidohydrolase; M38 Family Peptidase; Aryldialkylphosphatase Related Protein; Parathion Hydrolase; Amidohydrolase Family; Amidohydrolase Domain Protein; Pro-Hyp Dipeptidase; Metal-Dependent Amidohydrolase; Aryldialkylphosphatase; Metallo-Dependent Hydrolase; Amidase; Metal-Dependent Hydrolase; Exported Adenine Deaminase-Like Amidohydrolase; Aryldialkylphosphatase-Related Protein; M38 Familypeptidase; Amidohydrolase Imidazolonepropionase; Xaa-Arg/Lys Peptidase; Hydrolase; Amidohydrolase Domain-Containing Protein; X-Pro Dipeptidase
Number of amino acids: Translated: 444; Mature: 444
Protein sequence:
>444_residues MQSRVKLRSFLRVMRIGGIALLGAVGTGTAAQEAPSQTVITAARYIDVLSGKTVEHPAIFVGADGRITNIADARTVRWGS DVKHIDLGGKTLLPGLIDMHVHLDGPADIGGYRGLEFTDSFWGMTAVKNANDMLNAGFTTVRNVGSGDRNDIGLKQAIDS GYATGPRIVPAGYALGATGGHCDSTFLPPSLEKKDGKEEGIGDSPDELRYQVRRQRKYGAEVIKVCATGGVFSRNTEPGQ LQVPENELRAIADEAHQWGLRVAAHAHGAAGIRAAIAAGIDTIEHASLVDDEGIRMAVARKQPVWFAMDIYNTEYTQAEG SKNGVLEDNLRKDREIAQIQRDNFRKAHRAGVRMVFASDAGVMPHGEVGKQFRVMVEYGMTPIQAIQAATKNAAEALGRE KDVGAIAVGRYADIVAVDGDPLANVRELESVDAVVKGGVLVKGE
Sequences:
>Translated_444_residues MQSRVKLRSFLRVMRIGGIALLGAVGTGTAAQEAPSQTVITAARYIDVLSGKTVEHPAIFVGADGRITNIADARTVRWGS DVKHIDLGGKTLLPGLIDMHVHLDGPADIGGYRGLEFTDSFWGMTAVKNANDMLNAGFTTVRNVGSGDRNDIGLKQAIDS GYATGPRIVPAGYALGATGGHCDSTFLPPSLEKKDGKEEGIGDSPDELRYQVRRQRKYGAEVIKVCATGGVFSRNTEPGQ LQVPENELRAIADEAHQWGLRVAAHAHGAAGIRAAIAAGIDTIEHASLVDDEGIRMAVARKQPVWFAMDIYNTEYTQAEG SKNGVLEDNLRKDREIAQIQRDNFRKAHRAGVRMVFASDAGVMPHGEVGKQFRVMVEYGMTPIQAIQAATKNAAEALGRE KDVGAIAVGRYADIVAVDGDPLANVRELESVDAVVKGGVLVKGE >Mature_444_residues MQSRVKLRSFLRVMRIGGIALLGAVGTGTAAQEAPSQTVITAARYIDVLSGKTVEHPAIFVGADGRITNIADARTVRWGS DVKHIDLGGKTLLPGLIDMHVHLDGPADIGGYRGLEFTDSFWGMTAVKNANDMLNAGFTTVRNVGSGDRNDIGLKQAIDS GYATGPRIVPAGYALGATGGHCDSTFLPPSLEKKDGKEEGIGDSPDELRYQVRRQRKYGAEVIKVCATGGVFSRNTEPGQ LQVPENELRAIADEAHQWGLRVAAHAHGAAGIRAAIAAGIDTIEHASLVDDEGIRMAVARKQPVWFAMDIYNTEYTQAEG SKNGVLEDNLRKDREIAQIQRDNFRKAHRAGVRMVFASDAGVMPHGEVGKQFRVMVEYGMTPIQAIQAATKNAAEALGRE KDVGAIAVGRYADIVAVDGDPLANVRELESVDAVVKGGVLVKGE
Specific function: Unknown
COG id: COG1228
COG function: function code Q; Imidazolonepropionase and related amidohydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6322248, Length=307, Percent_Identity=28.3387622149837, Blast_Score=101, Evalue=2e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47444; Mature: 47444
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSRVKLRSFLRVMRIGGIALLGAVGTGTAAQEAPSQTVITAARYIDVLSGKTVEHPAIF CCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHCCCCHHHHHHHHHHHHHCCCCCCCCEEE VGADGRITNIADARTVRWGSDVKHIDLGGKTLLPGLIDMHVHLDGPADIGGYRGLEFTDS EECCCCEEECCCCCEEECCCCCEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC FWGMTAVKNANDMLNAGFTTVRNVGSGDRNDIGLKQAIDSGYATGPRIVPAGYALGATGG CCCHHHHCCCHHHHHCCHHHHHCCCCCCCCCCCHHHHHHCCCCCCCEEEECCEEECCCCC HCDSTFLPPSLEKKDGKEEGIGDSPDELRYQVRRQRKYGAEVIKVCATGGVFSRNTEPGQ CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCE LQVPENELRAIADEAHQWGLRVAAHAHGAAGIRAAIAAGIDTIEHASLVDDEGIRMAVAR EECCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC KQPVWFAMDIYNTEYTQAEGSKNGVLEDNLRKDREIAQIQRDNFRKAHRAGVRMVFASDA CCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC GVMPHGEVGKQFRVMVEYGMTPIQAIQAATKNAAEALGREKDVGAIAVGRYADIVAVDGD CCCCCCCCCHHEEEHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEECCC PLANVRELESVDAVVKGGVLVKGE CCCHHHHHHHHHHHHHCCEEEECC >Mature Secondary Structure MQSRVKLRSFLRVMRIGGIALLGAVGTGTAAQEAPSQTVITAARYIDVLSGKTVEHPAIF CCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHCCCCHHHHHHHHHHHHHCCCCCCCCEEE VGADGRITNIADARTVRWGSDVKHIDLGGKTLLPGLIDMHVHLDGPADIGGYRGLEFTDS EECCCCEEECCCCCEEECCCCCEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC FWGMTAVKNANDMLNAGFTTVRNVGSGDRNDIGLKQAIDSGYATGPRIVPAGYALGATGG CCCHHHHCCCHHHHHCCHHHHHCCCCCCCCCCCHHHHHHCCCCCCCEEEECCEEECCCCC HCDSTFLPPSLEKKDGKEEGIGDSPDELRYQVRRQRKYGAEVIKVCATGGVFSRNTEPGQ CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCE LQVPENELRAIADEAHQWGLRVAAHAHGAAGIRAAIAAGIDTIEHASLVDDEGIRMAVAR EECCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC KQPVWFAMDIYNTEYTQAEGSKNGVLEDNLRKDREIAQIQRDNFRKAHRAGVRMVFASDA CCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC GVMPHGEVGKQFRVMVEYGMTPIQAIQAATKNAAEALGREKDVGAIAVGRYADIVAVDGD CCCCCCCCCHHEEEHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEECCC PLANVRELESVDAVVKGGVLVKGE CCCHHHHHHHHHHHHHCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA