Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103486725

Identifier: 103486725

GI number: 103486725

Start: 1287056

End: 1288390

Strand: Direct

Name: 103486725

Synonym: Sala_1238

Alternate gene names: NA

Gene position: 1287056-1288390 (Clockwise)

Preceding gene: 103486724

Following gene: 103486727

Centisome position: 38.48

GC content: 65.77

Gene sequence:

>1335_bases
ATGCAATCCAGAGTGAAGTTGCGCAGCTTTCTGCGGGTTATGCGAATCGGCGGCATCGCGCTTCTGGGCGCAGTGGGCAC
GGGCACCGCGGCACAGGAGGCGCCGTCGCAGACGGTCATCACCGCCGCGCGCTACATCGACGTGCTGAGCGGCAAGACGG
TCGAGCACCCCGCAATCTTCGTCGGCGCCGATGGCCGCATCACCAATATCGCCGACGCGCGCACCGTCCGCTGGGGTAGC
GACGTCAAGCATATCGACCTCGGCGGCAAGACTTTGCTCCCCGGCCTTATCGACATGCACGTCCACCTCGACGGTCCTGC
CGACATCGGCGGCTATCGCGGGCTGGAGTTCACCGACAGCTTCTGGGGCATGACCGCCGTCAAGAACGCGAACGACATGC
TGAACGCCGGTTTCACGACGGTGCGCAACGTCGGATCGGGCGACCGCAACGACATCGGCCTCAAACAGGCGATCGATTCG
GGTTACGCGACCGGCCCGCGCATCGTTCCCGCGGGCTATGCGCTCGGCGCGACCGGCGGGCATTGCGACAGCACTTTCCT
CCCTCCCAGCCTGGAAAAAAAGGACGGCAAGGAAGAGGGCATCGGCGACAGCCCCGACGAACTGCGCTATCAGGTGCGCC
GCCAGCGCAAATATGGCGCCGAGGTCATCAAGGTGTGCGCGACCGGCGGCGTTTTTTCGCGCAACACCGAGCCGGGGCAG
TTGCAGGTGCCCGAGAATGAGCTGCGCGCCATCGCCGACGAGGCACACCAGTGGGGGCTGCGCGTCGCCGCGCACGCGCA
TGGCGCGGCGGGCATCCGCGCCGCGATCGCGGCGGGGATCGACACGATCGAACATGCGAGCCTCGTCGACGACGAGGGCA
TTCGCATGGCGGTCGCCCGCAAGCAGCCCGTCTGGTTCGCGATGGATATCTACAACACCGAATATACGCAGGCCGAGGGC
TCGAAAAACGGCGTGCTTGAGGATAATCTGCGCAAGGATCGCGAGATCGCGCAGATCCAGCGCGACAATTTCAGGAAAGC
GCACCGCGCCGGGGTGCGGATGGTGTTCGCGTCCGACGCCGGAGTGATGCCGCACGGTGAGGTCGGCAAGCAGTTCCGCG
TCATGGTCGAATATGGAATGACGCCGATACAGGCGATCCAGGCCGCGACGAAAAACGCCGCCGAGGCGCTGGGGCGCGAA
AAGGATGTAGGGGCGATTGCCGTGGGGCGCTATGCCGACATCGTCGCGGTCGACGGCGATCCGCTGGCCAATGTGCGCGA
GCTGGAAAGCGTCGACGCGGTGGTGAAGGGCGGGGTGCTGGTGAAGGGGGAGTGA

Upstream 100 bases:

>100_bases
CTGCACATCTGAGCCTCGATCGCTCCCGCGATTTTCCGCTGTCCTAATCGGTGCTCCTTTGCCATCTAGGCAAAGGGCAC
CAACAAGGGACGGTCGCGAT

Downstream 100 bases:

>100_bases
ACCTTCGCCCCGCGATGGCGGGGCCCGCCTGAGGCCCTGGTCAACCGCGTTGTGTAAACCGACAGCGGCCCCCGCCTGCG
CGGGGGCGACGGATTTTCTT

Product: amidohydrolase

Products: NA

Alternate protein names: Prolidase; Xaa-Pro Dipeptidase; Amidohydrolase Family Protein; Imidazolonepropionase; Secreted Hydrolase; Xaa-Pro Dipeptidase Family; Imidazolonepropionase Related Amidohydrolase; M38 Family Peptidase; Aryldialkylphosphatase Related Protein; Parathion Hydrolase; Amidohydrolase Family; Amidohydrolase Domain Protein; Pro-Hyp Dipeptidase; Metal-Dependent Amidohydrolase; Aryldialkylphosphatase; Metallo-Dependent Hydrolase; Amidase; Metal-Dependent Hydrolase; Exported Adenine Deaminase-Like Amidohydrolase; Aryldialkylphosphatase-Related Protein; M38 Familypeptidase; Amidohydrolase Imidazolonepropionase; Xaa-Arg/Lys Peptidase; Hydrolase; Amidohydrolase Domain-Containing Protein; X-Pro Dipeptidase

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MQSRVKLRSFLRVMRIGGIALLGAVGTGTAAQEAPSQTVITAARYIDVLSGKTVEHPAIFVGADGRITNIADARTVRWGS
DVKHIDLGGKTLLPGLIDMHVHLDGPADIGGYRGLEFTDSFWGMTAVKNANDMLNAGFTTVRNVGSGDRNDIGLKQAIDS
GYATGPRIVPAGYALGATGGHCDSTFLPPSLEKKDGKEEGIGDSPDELRYQVRRQRKYGAEVIKVCATGGVFSRNTEPGQ
LQVPENELRAIADEAHQWGLRVAAHAHGAAGIRAAIAAGIDTIEHASLVDDEGIRMAVARKQPVWFAMDIYNTEYTQAEG
SKNGVLEDNLRKDREIAQIQRDNFRKAHRAGVRMVFASDAGVMPHGEVGKQFRVMVEYGMTPIQAIQAATKNAAEALGRE
KDVGAIAVGRYADIVAVDGDPLANVRELESVDAVVKGGVLVKGE

Sequences:

>Translated_444_residues
MQSRVKLRSFLRVMRIGGIALLGAVGTGTAAQEAPSQTVITAARYIDVLSGKTVEHPAIFVGADGRITNIADARTVRWGS
DVKHIDLGGKTLLPGLIDMHVHLDGPADIGGYRGLEFTDSFWGMTAVKNANDMLNAGFTTVRNVGSGDRNDIGLKQAIDS
GYATGPRIVPAGYALGATGGHCDSTFLPPSLEKKDGKEEGIGDSPDELRYQVRRQRKYGAEVIKVCATGGVFSRNTEPGQ
LQVPENELRAIADEAHQWGLRVAAHAHGAAGIRAAIAAGIDTIEHASLVDDEGIRMAVARKQPVWFAMDIYNTEYTQAEG
SKNGVLEDNLRKDREIAQIQRDNFRKAHRAGVRMVFASDAGVMPHGEVGKQFRVMVEYGMTPIQAIQAATKNAAEALGRE
KDVGAIAVGRYADIVAVDGDPLANVRELESVDAVVKGGVLVKGE
>Mature_444_residues
MQSRVKLRSFLRVMRIGGIALLGAVGTGTAAQEAPSQTVITAARYIDVLSGKTVEHPAIFVGADGRITNIADARTVRWGS
DVKHIDLGGKTLLPGLIDMHVHLDGPADIGGYRGLEFTDSFWGMTAVKNANDMLNAGFTTVRNVGSGDRNDIGLKQAIDS
GYATGPRIVPAGYALGATGGHCDSTFLPPSLEKKDGKEEGIGDSPDELRYQVRRQRKYGAEVIKVCATGGVFSRNTEPGQ
LQVPENELRAIADEAHQWGLRVAAHAHGAAGIRAAIAAGIDTIEHASLVDDEGIRMAVARKQPVWFAMDIYNTEYTQAEG
SKNGVLEDNLRKDREIAQIQRDNFRKAHRAGVRMVFASDAGVMPHGEVGKQFRVMVEYGMTPIQAIQAATKNAAEALGRE
KDVGAIAVGRYADIVAVDGDPLANVRELESVDAVVKGGVLVKGE

Specific function: Unknown

COG id: COG1228

COG function: function code Q; Imidazolonepropionase and related amidohydrolases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6322248, Length=307, Percent_Identity=28.3387622149837, Blast_Score=101, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47444; Mature: 47444

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSRVKLRSFLRVMRIGGIALLGAVGTGTAAQEAPSQTVITAARYIDVLSGKTVEHPAIF
CCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHCCCCHHHHHHHHHHHHHCCCCCCCCEEE
VGADGRITNIADARTVRWGSDVKHIDLGGKTLLPGLIDMHVHLDGPADIGGYRGLEFTDS
EECCCCEEECCCCCEEECCCCCEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
FWGMTAVKNANDMLNAGFTTVRNVGSGDRNDIGLKQAIDSGYATGPRIVPAGYALGATGG
CCCHHHHCCCHHHHHCCHHHHHCCCCCCCCCCCHHHHHHCCCCCCCEEEECCEEECCCCC
HCDSTFLPPSLEKKDGKEEGIGDSPDELRYQVRRQRKYGAEVIKVCATGGVFSRNTEPGQ
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCE
LQVPENELRAIADEAHQWGLRVAAHAHGAAGIRAAIAAGIDTIEHASLVDDEGIRMAVAR
EECCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
KQPVWFAMDIYNTEYTQAEGSKNGVLEDNLRKDREIAQIQRDNFRKAHRAGVRMVFASDA
CCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
GVMPHGEVGKQFRVMVEYGMTPIQAIQAATKNAAEALGREKDVGAIAVGRYADIVAVDGD
CCCCCCCCCHHEEEHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEECCC
PLANVRELESVDAVVKGGVLVKGE
CCCHHHHHHHHHHHHHCCEEEECC
>Mature Secondary Structure
MQSRVKLRSFLRVMRIGGIALLGAVGTGTAAQEAPSQTVITAARYIDVLSGKTVEHPAIF
CCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHCCCCHHHHHHHHHHHHHCCCCCCCCEEE
VGADGRITNIADARTVRWGSDVKHIDLGGKTLLPGLIDMHVHLDGPADIGGYRGLEFTDS
EECCCCEEECCCCCEEECCCCCEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
FWGMTAVKNANDMLNAGFTTVRNVGSGDRNDIGLKQAIDSGYATGPRIVPAGYALGATGG
CCCHHHHCCCHHHHHCCHHHHHCCCCCCCCCCCHHHHHHCCCCCCCEEEECCEEECCCCC
HCDSTFLPPSLEKKDGKEEGIGDSPDELRYQVRRQRKYGAEVIKVCATGGVFSRNTEPGQ
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCE
LQVPENELRAIADEAHQWGLRVAAHAHGAAGIRAAIAAGIDTIEHASLVDDEGIRMAVAR
EECCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
KQPVWFAMDIYNTEYTQAEGSKNGVLEDNLRKDREIAQIQRDNFRKAHRAGVRMVFASDA
CCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
GVMPHGEVGKQFRVMVEYGMTPIQAIQAATKNAAEALGREKDVGAIAVGRYADIVAVDGD
CCCCCCCCCHHEEEHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEECCC
PLANVRELESVDAVVKGGVLVKGE
CCCHHHHHHHHHHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA