| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486684
Identifier: 103486684
GI number: 103486684
Start: 1236229
End: 1237602
Strand: Reverse
Name: 103486684
Synonym: Sala_1196
Alternate gene names: NA
Gene position: 1237602-1236229 (Counterclockwise)
Preceding gene: 103486685
Following gene: 103486683
Centisome position: 37.0
GC content: 62.95
Gene sequence:
>1374_bases ATGCGATCGGCCCTTTCGCTTTTGGTTCAAGGCGCTAGAGCGGCACCCATGTCTCCCTTCCACCATCTTCTCGTCAACAA TCTCGTCGCCAACATCACCAATTTTACGGTGTGGTTTGCGCTGACTTTCTGGACCTTTCTCGAAACCCAATCGGTGTTCG CGACGGGGATGATCGCGGGCGTCTACCTCGTGCTCACCGCGATGCTCGGCATCTGGTTCGGCAGCCTCGTCGATCATCAT GGCAAGCGGAACATGATGCTCGTCTCCAGCCTCGCGTCGCTGGCACTCTACGCGGCCATGCTCGGCGGCTATGCGCTCGA TCCAGACATCCGGGCCGCAAAGGTGCAGAGCGTCACCTTCTGGCTCTTCATCCTGCTCACCATGCTGGGAGTGATCGTCG GCAATATCCGGATGATCGCGCTGCCCACGCTCGTGACCTTGCTGGTGCCCGAGGACCGGCGCGACAGGGCGAACGGACTC GTCGGCATGGTCAGCGGCATTGGATTCCTTACGACCTCGGCGATCAGCGGTTTCCTCGTCGCTTGGGGCGGAATGGTCGC GACGCTTGGTTTTGCGATCGTCCTGTCGCTTGCCGCGGTCATCGACCTGCTAACCATCCGCGTCGATGAGCCGCGCGAGG CCGAAACACACGACGCGCCGCGGCGTGTCGATCTCGCCGGCACATTGCGTGTTGTGCTCGCCATTCCGGGCCTGATCGGT CTGATCCTGTTCGCGGCCTTCAACAATCTGCTCGGCGGCGTCTTTATGGCGCTCATGGACGCTTATGGTCTGTCGTTGAT GAAGGTTGAGGAATGGGGTCTGCTCTGGGCGGTCATATCGTGCGCCTTCATCGTCAGCGGGATGGTGATCGCGCGGACGG GGCTCGGCGCCAATCCGGTGCGCACATTGCTGGCGGTGAACCTTGCCGCGTGGACGGTGGCGGTCTTTTTCACGATCCAG TCGTCGATCCTGCTGCTCGCCACAGGCTGCTTCCTGTGGATGTTTCTCGGCCCCTATGCCGAAGCCGCCGAGCAAACGAC GCTGCAAAAGGTCGTTCCCCTTGAACGGCAGGGGCGCGTGTTCGGCTTTGCCCAGTCGGTCGAACAGGCCGCCTCGCCGC TCACCGCCTTCCTCATCGCGCCGATCACCCAGTTCGTCTTCGTGCCGCTGATGACGGATGGAGCAGGAGCGGCGGCGATC GGCGACTGGTACGGGCGCGGCCCCGAACGCGGTATCGCGATCGTCTTTTCGATCGCCGGGCTGCTCGGCGTGATCGCGAC GCTCGCGGCTTTCCGGTCCCGATCCTATCACCGCATATCGACCGCTTATGCAGAGGGCGTCGATAGCGGCGCGGCGGCAA CCGCAGCCGCCTGA
Upstream 100 bases:
>100_bases CCTCTACACCGGCGAAGTCGAACAGGAACGCCGCAGCGCGACGGTGACCAAGCTGTTCTGATCGCGTTCGAATAACAAGA TTGAAAGGGTCGGCGCAGCG
Downstream 100 bases:
>100_bases ATGGCGATGGCAAAAGCCTCTTCCGTTTCACTTTGCAATGCGTCTATCGTGCGCGACGACAAGAGGGAGACAAGAGGGAG GCGCCATGTCCATGCTGTCC
Product: major facilitator transporter
Products: NA
Alternate protein names: Multidrug Resistance Protein; Facilitator Superfamily Protein; Facilitator Family Transporter; Non-Ribosomal Peptide Synthetase-Like Protein; Facilitator Superfamily Transporter; Amino Acid Adenylation Domain-Containing Protein; Facilitator Superfamily Macrolide-Efflux Protein; Macrolide-Efflux Pump; Macrolide Efflux Protein; Facilitator Family Protein
Number of amino acids: Translated: 457; Mature: 457
Protein sequence:
>457_residues MRSALSLLVQGARAAPMSPFHHLLVNNLVANITNFTVWFALTFWTFLETQSVFATGMIAGVYLVLTAMLGIWFGSLVDHH GKRNMMLVSSLASLALYAAMLGGYALDPDIRAAKVQSVTFWLFILLTMLGVIVGNIRMIALPTLVTLLVPEDRRDRANGL VGMVSGIGFLTTSAISGFLVAWGGMVATLGFAIVLSLAAVIDLLTIRVDEPREAETHDAPRRVDLAGTLRVVLAIPGLIG LILFAAFNNLLGGVFMALMDAYGLSLMKVEEWGLLWAVISCAFIVSGMVIARTGLGANPVRTLLAVNLAAWTVAVFFTIQ SSILLLATGCFLWMFLGPYAEAAEQTTLQKVVPLERQGRVFGFAQSVEQAASPLTAFLIAPITQFVFVPLMTDGAGAAAI GDWYGRGPERGIAIVFSIAGLLGVIATLAAFRSRSYHRISTAYAEGVDSGAAATAAA
Sequences:
>Translated_457_residues MRSALSLLVQGARAAPMSPFHHLLVNNLVANITNFTVWFALTFWTFLETQSVFATGMIAGVYLVLTAMLGIWFGSLVDHH GKRNMMLVSSLASLALYAAMLGGYALDPDIRAAKVQSVTFWLFILLTMLGVIVGNIRMIALPTLVTLLVPEDRRDRANGL VGMVSGIGFLTTSAISGFLVAWGGMVATLGFAIVLSLAAVIDLLTIRVDEPREAETHDAPRRVDLAGTLRVVLAIPGLIG LILFAAFNNLLGGVFMALMDAYGLSLMKVEEWGLLWAVISCAFIVSGMVIARTGLGANPVRTLLAVNLAAWTVAVFFTIQ SSILLLATGCFLWMFLGPYAEAAEQTTLQKVVPLERQGRVFGFAQSVEQAASPLTAFLIAPITQFVFVPLMTDGAGAAAI GDWYGRGPERGIAIVFSIAGLLGVIATLAAFRSRSYHRISTAYAEGVDSGAAATAAA >Mature_457_residues MRSALSLLVQGARAAPMSPFHHLLVNNLVANITNFTVWFALTFWTFLETQSVFATGMIAGVYLVLTAMLGIWFGSLVDHH GKRNMMLVSSLASLALYAAMLGGYALDPDIRAAKVQSVTFWLFILLTMLGVIVGNIRMIALPTLVTLLVPEDRRDRANGL VGMVSGIGFLTTSAISGFLVAWGGMVATLGFAIVLSLAAVIDLLTIRVDEPREAETHDAPRRVDLAGTLRVVLAIPGLIG LILFAAFNNLLGGVFMALMDAYGLSLMKVEEWGLLWAVISCAFIVSGMVIARTGLGANPVRTLLAVNLAAWTVAVFFTIQ SSILLLATGCFLWMFLGPYAEAAEQTTLQKVVPLERQGRVFGFAQSVEQAASPLTAFLIAPITQFVFVPLMTDGAGAAAI GDWYGRGPERGIAIVFSIAGLLGVIATLAAFRSRSYHRISTAYAEGVDSGAAATAAA
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48620; Mature: 48620
Theoretical pI: Translated: 7.67; Mature: 7.67
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSALSLLVQGARAAPMSPFHHLLVNNLVANITNFTVWFALTFWTFLETQSVFATGMIAG CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VYLVLTAMLGIWFGSLVDHHGKRNMMLVSSLASLALYAAMLGGYALDPDIRAAKVQSVTF HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH WLFILLTMLGVIVGNIRMIALPTLVTLLVPEDRRDRANGLVGMVSGIGFLTTSAISGFLV HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHH AWGGMVATLGFAIVLSLAAVIDLLTIRVDEPREAETHDAPRRVDLAGTLRVVLAIPGLIG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHH LILFAAFNNLLGGVFMALMDAYGLSLMKVEEWGLLWAVISCAFIVSGMVIARTGLGANPV HHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH RTLLAVNLAAWTVAVFFTIQSSILLLATGCFLWMFLGPYAEAAEQTTLQKVVPLERQGRV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH FGFAQSVEQAASPLTAFLIAPITQFVFVPLMTDGAGAAAIGDWYGRGPERGIAIVFSIAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHCCCCCCCHHHHHHHHH LLGVIATLAAFRSRSYHRISTAYAEGVDSGAAATAAA HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MRSALSLLVQGARAAPMSPFHHLLVNNLVANITNFTVWFALTFWTFLETQSVFATGMIAG CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VYLVLTAMLGIWFGSLVDHHGKRNMMLVSSLASLALYAAMLGGYALDPDIRAAKVQSVTF HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH WLFILLTMLGVIVGNIRMIALPTLVTLLVPEDRRDRANGLVGMVSGIGFLTTSAISGFLV HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHH AWGGMVATLGFAIVLSLAAVIDLLTIRVDEPREAETHDAPRRVDLAGTLRVVLAIPGLIG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHH LILFAAFNNLLGGVFMALMDAYGLSLMKVEEWGLLWAVISCAFIVSGMVIARTGLGANPV HHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH RTLLAVNLAAWTVAVFFTIQSSILLLATGCFLWMFLGPYAEAAEQTTLQKVVPLERQGRV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH FGFAQSVEQAASPLTAFLIAPITQFVFVPLMTDGAGAAAIGDWYGRGPERGIAIVFSIAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHCCCCCCCHHHHHHHHH LLGVIATLAAFRSRSYHRISTAYAEGVDSGAAATAAA HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA