| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is pyrG
Identifier: 103486658
GI number: 103486658
Start: 1204407
End: 1206038
Strand: Reverse
Name: pyrG
Synonym: Sala_1170
Alternate gene names: 103486658
Gene position: 1206038-1204407 (Counterclockwise)
Preceding gene: 103486659
Following gene: 103486657
Centisome position: 36.05
GC content: 62.81
Gene sequence:
>1632_bases ATGGCGCGGTTCATTTTCATTACCGGCGGCGTGGTCTCCTCGCTTGGCAAGGGTTTGATGGCGGCCAGCCTCGCTGCCCT CCTGCAAGCGCGTGGCTATCGTGTCCGCATCCGAAAGTTCGATCCCTATCTGAACGTCGATCCGGGCACGATGTCGCCCT ATCAGCACGGCGAAGTCTATGTGACCGATGACGGAGCGGAAACCGACCTCGACCTGGGCCATTATGAACGCTTCACCGGC GTTGCGGCGCGGCAGAGCGACAATGTGACCTCGGGCCGTATCTATCAGGGCATCATCGCCAAGGAACGCCGCGGCGACTA TCTCGGCGCGACGGTACAGGTTGTCCCGCACGTCACCGACGCGATCAAGGATTTCGCCCGCGCCGAAACCGACGACCTCG ATTTCGTGCTGTGCGAGATCGGCGGCACCGTCGGCGATATCGAATCGCTGCCCTTTATCGAGGCGATCCGCCAGTTGAAG AATGAGGTCGGCCGCGACAACGCCATCTCGGTCCACGTCACGCTGGTGCCCTATATCGCCGCCGCGGGCGAGTTGAAGAC AAAGCCGACGCAGCACAGCGTGCGCGAACTCGCCTCGCTCGGCGTCCAGCCCGACATTCTGCTCTGCCGATGCGAAAAGC CGCTTCCCGACAGCGAACGCGCCAAGATCGCGCTGTTCTGCAATGTCCGCAAGGAAGCGGTGATTCCCGCGCTCGACGCC GACAGCATCTATTCGGTACCGGTCCAGTATCATGGCGAGGGTCTGGACAGCGAAGTGCTGCGCGCATTCGGAATCCTCGA CGCGCCCGCGCCCGACCTGACGGCCTGGTATGACATCATGGACCGCAAGCAGCATCCCGAGGGCGAGGTCACGATCGGCG TCGTCGGCAAATATGTCTCGCTGCCCGATGCCTATAAATCCCTGAACGAGGCGCTGGTCCATGGCGGCATGGCGCACCGG GTCAAGGTCAATATCCGCTGGCTCGACGCCGAAATGTTCGAGCGCGACGAAGACCTGGTCGCCAATCTCGAACCGCTGCA CGGCATCCTCGTCCCCGGCGGCTTCGGCGAGCGCGGGTCGGAGGGCAAGATTGCGAGCGTGCGTTTCGCGCGCGAGCGGA ATGTGCCCTTTTTCGGCATCTGCCTGGGGATGCAGATGGCGTGCATCGAGGCGGCGCGCAATACGAGCGGCATTGCGAAT GCGTCGAGTACCGAATTCGGTCCGACCGACGAACCCGTCGTCGGCCTGATCACCGAATGGATGAGCGCCGAAGGGCTTCA GAAACGCGGTGCGAACACCGATCTTGGCGGCACGATGCGCCTCGGCGCCTATGACGCGAAACTTTCGCCGAACAGCCATG TCGCCAGCGTCTATGGCACGAACGAGATCAGCGAGCGTCACCGCCACCGCTATGAGGTCAACGGGGCCTATCGCGAGCGG CTCGAAAAGGGCGGGCTCGTCTTTTCAGGCATGTCGCCCGACGGCATGCTACCGGAAATCGTTGAGCGGCCGGACCATCC GTGGTTTATCGGGGTGCAATTCCACCCGGAACTCAAATCCAAGCCCTTCGACCCGCATCCCCTGTTTGCAGGATTCATCG AGGCGGCGGTGAAGCAGAGCCGGCTGGTCTGA
Upstream 100 bases:
>100_bases TCCCGCCTCCGTATCAGCCCGCGCTCACGGAAATAATTTCCGCAGTTCGCGATTCGACGGCTTGCGCCGTCCCCCTCCCT TTGAGTAAGTCTTTCCTCCC
Downstream 100 bases:
>100_bases CCGAAAGGGATTGGGGCGATGGATCACGCAAGACTTGCCGAACTGCAGAGCCCCGACAGCATCTTTTCCGGCCTTTCGGT CGAGGATTGGGCCGAAATCA
Product: CTP synthetase
Products: NA
Alternate protein names: CTP synthetase; UTP--ammonia ligase
Number of amino acids: Translated: 543; Mature: 542
Protein sequence:
>543_residues MARFIFITGGVVSSLGKGLMAASLAALLQARGYRVRIRKFDPYLNVDPGTMSPYQHGEVYVTDDGAETDLDLGHYERFTG VAARQSDNVTSGRIYQGIIAKERRGDYLGATVQVVPHVTDAIKDFARAETDDLDFVLCEIGGTVGDIESLPFIEAIRQLK NEVGRDNAISVHVTLVPYIAAAGELKTKPTQHSVRELASLGVQPDILLCRCEKPLPDSERAKIALFCNVRKEAVIPALDA DSIYSVPVQYHGEGLDSEVLRAFGILDAPAPDLTAWYDIMDRKQHPEGEVTIGVVGKYVSLPDAYKSLNEALVHGGMAHR VKVNIRWLDAEMFERDEDLVANLEPLHGILVPGGFGERGSEGKIASVRFARERNVPFFGICLGMQMACIEAARNTSGIAN ASSTEFGPTDEPVVGLITEWMSAEGLQKRGANTDLGGTMRLGAYDAKLSPNSHVASVYGTNEISERHRHRYEVNGAYRER LEKGGLVFSGMSPDGMLPEIVERPDHPWFIGVQFHPELKSKPFDPHPLFAGFIEAAVKQSRLV
Sequences:
>Translated_543_residues MARFIFITGGVVSSLGKGLMAASLAALLQARGYRVRIRKFDPYLNVDPGTMSPYQHGEVYVTDDGAETDLDLGHYERFTG VAARQSDNVTSGRIYQGIIAKERRGDYLGATVQVVPHVTDAIKDFARAETDDLDFVLCEIGGTVGDIESLPFIEAIRQLK NEVGRDNAISVHVTLVPYIAAAGELKTKPTQHSVRELASLGVQPDILLCRCEKPLPDSERAKIALFCNVRKEAVIPALDA DSIYSVPVQYHGEGLDSEVLRAFGILDAPAPDLTAWYDIMDRKQHPEGEVTIGVVGKYVSLPDAYKSLNEALVHGGMAHR VKVNIRWLDAEMFERDEDLVANLEPLHGILVPGGFGERGSEGKIASVRFARERNVPFFGICLGMQMACIEAARNTSGIAN ASSTEFGPTDEPVVGLITEWMSAEGLQKRGANTDLGGTMRLGAYDAKLSPNSHVASVYGTNEISERHRHRYEVNGAYRER LEKGGLVFSGMSPDGMLPEIVERPDHPWFIGVQFHPELKSKPFDPHPLFAGFIEAAVKQSRLV >Mature_542_residues ARFIFITGGVVSSLGKGLMAASLAALLQARGYRVRIRKFDPYLNVDPGTMSPYQHGEVYVTDDGAETDLDLGHYERFTGV AARQSDNVTSGRIYQGIIAKERRGDYLGATVQVVPHVTDAIKDFARAETDDLDFVLCEIGGTVGDIESLPFIEAIRQLKN EVGRDNAISVHVTLVPYIAAAGELKTKPTQHSVRELASLGVQPDILLCRCEKPLPDSERAKIALFCNVRKEAVIPALDAD SIYSVPVQYHGEGLDSEVLRAFGILDAPAPDLTAWYDIMDRKQHPEGEVTIGVVGKYVSLPDAYKSLNEALVHGGMAHRV KVNIRWLDAEMFERDEDLVANLEPLHGILVPGGFGERGSEGKIASVRFARERNVPFFGICLGMQMACIEAARNTSGIANA SSTEFGPTDEPVVGLITEWMSAEGLQKRGANTDLGGTMRLGAYDAKLSPNSHVASVYGTNEISERHRHRYEVNGAYRERL EKGGLVFSGMSPDGMLPEIVERPDHPWFIGVQFHPELKSKPFDPHPLFAGFIEAAVKQSRLV
Specific function: Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen
COG id: COG0504
COG function: function code F; CTP synthase (UTP-ammonia lyase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glutamine amidotransferase type-1 domain
Homologues:
Organism=Homo sapiens, GI148491070, Length=557, Percent_Identity=44.8833034111311, Blast_Score=473, Evalue=1e-133, Organism=Homo sapiens, GI28559085, Length=559, Percent_Identity=42.7549194991055, Blast_Score=450, Evalue=1e-126, Organism=Homo sapiens, GI28559083, Length=559, Percent_Identity=42.7549194991055, Blast_Score=450, Evalue=1e-126, Organism=Homo sapiens, GI221316689, Length=559, Percent_Identity=42.7549194991055, Blast_Score=450, Evalue=1e-126, Organism=Escherichia coli, GI1789142, Length=535, Percent_Identity=57.5700934579439, Blast_Score=606, Evalue=1e-174, Organism=Caenorhabditis elegans, GI25148299, Length=609, Percent_Identity=36.6174055829228, Blast_Score=394, Evalue=1e-110, Organism=Saccharomyces cerevisiae, GI6322563, Length=570, Percent_Identity=41.7543859649123, Blast_Score=440, Evalue=1e-124, Organism=Saccharomyces cerevisiae, GI6319432, Length=566, Percent_Identity=41.1660777385159, Blast_Score=423, Evalue=1e-119, Organism=Drosophila melanogaster, GI24664469, Length=558, Percent_Identity=43.9068100358423, Blast_Score=437, Evalue=1e-122, Organism=Drosophila melanogaster, GI21357815, Length=503, Percent_Identity=43.1411530815109, Blast_Score=373, Evalue=1e-103,
Paralogues:
None
Copy number: 480 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): PYRG_SPHAL (Q1GTY6)
Other databases:
- EMBL: CP000356 - RefSeq: YP_616219.1 - ProteinModelPortal: Q1GTY6 - SMR: Q1GTY6 - GeneID: 4080876 - GenomeReviews: CP000356_GR - KEGG: sal:Sala_1170 - NMPDR: fig|317655.9.peg.1104 - HOGENOM: HBG597806 - OMA: RVTMQKL - ProtClustDB: PRK05380 - BioCyc: SALA317655:SALA_1170-MONOMER - BRENDA: 6.3.4.2 - HAMAP: MF_01227 - InterPro: IPR004468 - InterPro: IPR017456 - InterPro: IPR017926 - InterPro: IPR000991 - TIGRFAMs: TIGR00337
Pfam domain/function: PF06418 CTP_synth_N; PF00117 GATase
EC number: =6.3.4.2
Molecular weight: Translated: 59457; Mature: 59326
Theoretical pI: Translated: 5.49; Mature: 5.49
Prosite motif: PS51273 GATASE_TYPE_1; PS00442 GATASE_TYPE_I
Important sites: ACT_SITE 381-381 ACT_SITE 515-515 ACT_SITE 517-517
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARFIFITGGVVSSLGKGLMAASLAALLQARGYRVRIRKFDPYLNVDPGTMSPYQHGEVY CCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEECCCCCCCCCCCCEEE VTDDGAETDLDLGHYERFTGVAARQSDNVTSGRIYQGIIAKERRGDYLGATVQVVPHVTD EECCCCCCCCCCCHHHHHHCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEHHHHHH AIKDFARAETDDLDFVLCEIGGTVGDIESLPFIEAIRQLKNEVGRDNAISVHVTLVPYIA HHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEHHH AAGELKTKPTQHSVRELASLGVQPDILLCRCEKPLPDSERAKIALFCNVRKEAVIPALDA HCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEEEECCHHHCCCCCCC DSIYSVPVQYHGEGLDSEVLRAFGILDAPAPDLTAWYDIMDRKQHPEGEVTIGVVGKYVS CCEEECCCEECCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCC LPDAYKSLNEALVHGGMAHRVKVNIRWLDAEMFERDEDLVANLEPLHGILVPGGFGERGS CCHHHHHHHHHHHHCCCEEEEEEEEEEECHHHHHCCHHHHHCCCCCCEEEECCCCCCCCC EGKIASVRFARERNVPFFGICLGMQMACIEAARNTSGIANASSTEFGPTDEPVVGLITEW CCCEEEEEEHHHCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH MSAEGLQKRGANTDLGGTMRLGAYDAKLSPNSHVASVYGTNEISERHRHRYEVNGAYRER HHHHHHHHCCCCCCCCCEEEECEEECCCCCCCCEEEEECCHHHHHHHHHEEECCHHHHHH LEKGGLVFSGMSPDGMLPEIVERPDHPWFIGVQFHPELKSKPFDPHPLFAGFIEAAVKQS HHHCCEEEECCCCCCCCHHHHHCCCCCEEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHH RLV CCC >Mature Secondary Structure ARFIFITGGVVSSLGKGLMAASLAALLQARGYRVRIRKFDPYLNVDPGTMSPYQHGEVY CEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEECCCCCCCCCCCCEEE VTDDGAETDLDLGHYERFTGVAARQSDNVTSGRIYQGIIAKERRGDYLGATVQVVPHVTD EECCCCCCCCCCCHHHHHHCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEHHHHHH AIKDFARAETDDLDFVLCEIGGTVGDIESLPFIEAIRQLKNEVGRDNAISVHVTLVPYIA HHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEHHH AAGELKTKPTQHSVRELASLGVQPDILLCRCEKPLPDSERAKIALFCNVRKEAVIPALDA HCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEEEECCHHHCCCCCCC DSIYSVPVQYHGEGLDSEVLRAFGILDAPAPDLTAWYDIMDRKQHPEGEVTIGVVGKYVS CCEEECCCEECCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCC LPDAYKSLNEALVHGGMAHRVKVNIRWLDAEMFERDEDLVANLEPLHGILVPGGFGERGS CCHHHHHHHHHHHHCCCEEEEEEEEEEECHHHHHCCHHHHHCCCCCCEEEECCCCCCCCC EGKIASVRFARERNVPFFGICLGMQMACIEAARNTSGIANASSTEFGPTDEPVVGLITEW CCCEEEEEEHHHCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH MSAEGLQKRGANTDLGGTMRLGAYDAKLSPNSHVASVYGTNEISERHRHRYEVNGAYRER HHHHHHHHCCCCCCCCCEEEECEEECCCCCCCCEEEEECCHHHHHHHHHEEECCHHHHHH LEKGGLVFSGMSPDGMLPEIVERPDHPWFIGVQFHPELKSKPFDPHPLFAGFIEAAVKQS HHHCCEEEECCCCCCCCHHHHHCCCCCEEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHH RLV CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA