Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is yohC [C]

Identifier: 103486586

GI number: 103486586

Start: 1124996

End: 1125625

Strand: Direct

Name: yohC [C]

Synonym: Sala_1097

Alternate gene names: 103486586

Gene position: 1124996-1125625 (Clockwise)

Preceding gene: 103486584

Following gene: 103486588

Centisome position: 33.63

GC content: 65.71

Gene sequence:

>630_bases
ATGATGGCTGATTTACCACCCAATGGTTCGGGTTCCGCCGCGGGCATCGTCCAGCGCGCCAGGGACATATTGCTCAGGCC
CAGGGAAAGCTGGCCGGTGATCGCCGCCGAACCGGCGACGGCGCAGTCCATCTATATTCCCTATGTCCTCGTGCTGGCGG
CGATCGGGCCGCTCGCCTCGCTGATCGGCGGGCAACTCGTTGGCGTCTCGGTGCTGGGCACCACATGGCATCCGCCGATG
GGAGCGGCGCTCACCTCGGCCATCCTGTCCTATGGGTTGACGCTGGCGATGGTGTTTGTCCTGGCGCTCGTGATCGACGG
GCTCGCGCCCAGTTTCGGCGGGCAAAAGGACCAGATCCAGGCGCTGAAGGTCGCGGCCTATTCGGGCACCGCGGCGTGGG
TCGGCGGCATTTTCGGGCTGATTCCCGCGCTCGGCCTGATCGGGCTGCTCTTTGCGCTCTATGGCCTCTACATCCTCTAC
CTCGGCCTGCCGGTGCTGATGAAGGTGCCGCAGGACAAGGCCGTCGGCTATGTCGCGGTCGTGGTGGTCATCGCGATCGT
GCTGTTCCTCATCGTCGGCGCGGTCGTTGGCTCTGTCACCGCGCCGTCGCTGCTCGGCGCGCAAATGTGA

Upstream 100 bases:

>100_bases
TGATCGGGGTTACAGATGCGTTGGTCATCGGGGCTAAACATTCCCGTGGCTTTTGCATGTCCCGATCGGGTTGCGGGCCG
CATCCTAGCAGGGGAGACGC

Downstream 100 bases:

>100_bases
ACCAGACCGCCGTTTGCCGTTCGAGGTGACCGTCGATCAAGGGGCAGGTCAGGGAAAAATGGAGGAGAGTGAGGGATTCG
AACCCTCGGTACCCTTGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MMADLPPNGSGSAAGIVQRARDILLRPRESWPVIAAEPATAQSIYIPYVLVLAAIGPLASLIGGQLVGVSVLGTTWHPPM
GAALTSAILSYGLTLAMVFVLALVIDGLAPSFGGQKDQIQALKVAAYSGTAAWVGGIFGLIPALGLIGLLFALYGLYILY
LGLPVLMKVPQDKAVGYVAVVVVIAIVLFLIVGAVVGSVTAPSLLGAQM

Sequences:

>Translated_209_residues
MMADLPPNGSGSAAGIVQRARDILLRPRESWPVIAAEPATAQSIYIPYVLVLAAIGPLASLIGGQLVGVSVLGTTWHPPM
GAALTSAILSYGLTLAMVFVLALVIDGLAPSFGGQKDQIQALKVAAYSGTAAWVGGIFGLIPALGLIGLLFALYGLYILY
LGLPVLMKVPQDKAVGYVAVVVVIAIVLFLIVGAVVGSVTAPSLLGAQM
>Mature_209_residues
MMADLPPNGSGSAAGIVQRARDILLRPRESWPVIAAEPATAQSIYIPYVLVLAAIGPLASLIGGQLVGVSVLGTTWHPPM
GAALTSAILSYGLTLAMVFVLALVIDGLAPSFGGQKDQIQALKVAAYSGTAAWVGGIFGLIPALGLIGLLFALYGLYILY
LGLPVLMKVPQDKAVGYVAVVVVIAIVLFLIVGAVVGSVTAPSLLGAQM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21347; Mature: 21347

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMADLPPNGSGSAAGIVQRARDILLRPRESWPVIAAEPATAQSIYIPYVLVLAAIGPLAS
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
LIGGQLVGVSVLGTTWHPPMGAALTSAILSYGLTLAMVFVLALVIDGLAPSFGGQKDQIQ
HHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
ALKVAAYSGTAAWVGGIFGLIPALGLIGLLFALYGLYILYLGLPVLMKVPQDKAVGYVAV
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
VVVIAIVLFLIVGAVVGSVTAPSLLGAQM
HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMADLPPNGSGSAAGIVQRARDILLRPRESWPVIAAEPATAQSIYIPYVLVLAAIGPLAS
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
LIGGQLVGVSVLGTTWHPPMGAALTSAILSYGLTLAMVFVLALVIDGLAPSFGGQKDQIQ
HHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
ALKVAAYSGTAAWVGGIFGLIPALGLIGLLFALYGLYILYLGLPVLMKVPQDKAVGYVAV
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
VVVIAIVLFLIVGAVVGSVTAPSLLGAQM
HHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA