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The map label for this gene is radC [C]

Identifier: 103486559

GI number: 103486559

Start: 1102414

End: 1103232

Strand: Reverse

Name: radC [C]

Synonym: Sala_1070

Alternate gene names: 103486559

Gene position: 1103232-1102414 (Counterclockwise)

Preceding gene: 103486569

Following gene: 103486557

Centisome position: 32.98

GC content: 64.71

Gene sequence:

>819_bases
ATGGTCCCTCGGCCCCACCCCGCGCAGGACAACAACGCCGGAAATCGCGTTTCGCTCCAGCAAACTGGTCCGCTTTGCCA
TCTTGTCGTCCTATTGCCGTTGAGTGCACCGGACAAGGCGGTTATTCCCGGCTCGATGGGGGACAGCGAGACACCGGACC
ACGTTGGGCATCGCGCACGGCTGCGATCGCGCTTGCTCGAAGACGCCGACGGTCTCGCCGACTATGAACTGGTCGAATAT
CTCCTCGCGCTCGCCATTCCGCGCCGCGATACCAAACCGCTCGCCAAGGCGCTGCTGCGCGAGTTCGGTTCGCTGGCGCA
GCTCGTGAGCGCCGACCCCGAATCGCTGCGCCGCGTCGACGGGTTGGGCGACACCGGCATCGCCGCCCTCAAAATTGTCC
AGGCCAGCAGCCTGCGCCTTCTGAAAGGCGAGTTTCGCGACAAGCCGCTGCTGTCGAGCTGGGACGCATTGCTCGACTGG
CTACGCGCCGATATGGGGCCGATCGACGTCGAGCGGGTGCGGATCCTCTATCTCAACTCGCGCAACATGTTGATCCGCGA
CGAGCTCGCGAGCGAGGGGTCGATAGACCAGTCGGCCATCTATGTGCGCGAAGTGATCCGGCGCGCGCTCGAACTTGGCG
CTTCGGCGATCATCATCGTCCACAACCACCCAAGCGGCAGCCCCGAACCCAGCCGACAGGACATCGCAGTCACGCGCGAG
ATTGCCGAGGCCGGAACGCGGCTGGGTATCGTGCTGCACGACCATATCATCGTCGCCGGATCGGATTACCGCAGCTTCCG
CGCCCTCGGCCTGCTCTGA

Upstream 100 bases:

>100_bases
CGTGTCGACGAATCACCCCCCGTCACGTCATCGCTCGTGAAAAGGCGGGCACCTGCTGCCGGATCGAAAAGGCGTCGAAT
GACGTCATGGCGTACGACAT

Downstream 100 bases:

>100_bases
AGCCCGCTCGGAGAAGCGCCTCGCGGGTCTGGTCCATGCCGGGGACATCATCGCGCCCGGACGATCGGCAGCGGCTCGAC
AGCACCCCAAAGCAGCCGCC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MVPRPHPAQDNNAGNRVSLQQTGPLCHLVVLLPLSAPDKAVIPGSMGDSETPDHVGHRARLRSRLLEDADGLADYELVEY
LLALAIPRRDTKPLAKALLREFGSLAQLVSADPESLRRVDGLGDTGIAALKIVQASSLRLLKGEFRDKPLLSSWDALLDW
LRADMGPIDVERVRILYLNSRNMLIRDELASEGSIDQSAIYVREVIRRALELGASAIIIVHNHPSGSPEPSRQDIAVTRE
IAEAGTRLGIVLHDHIIVAGSDYRSFRALGLL

Sequences:

>Translated_272_residues
MVPRPHPAQDNNAGNRVSLQQTGPLCHLVVLLPLSAPDKAVIPGSMGDSETPDHVGHRARLRSRLLEDADGLADYELVEY
LLALAIPRRDTKPLAKALLREFGSLAQLVSADPESLRRVDGLGDTGIAALKIVQASSLRLLKGEFRDKPLLSSWDALLDW
LRADMGPIDVERVRILYLNSRNMLIRDELASEGSIDQSAIYVREVIRRALELGASAIIIVHNHPSGSPEPSRQDIAVTRE
IAEAGTRLGIVLHDHIIVAGSDYRSFRALGLL
>Mature_272_residues
MVPRPHPAQDNNAGNRVSLQQTGPLCHLVVLLPLSAPDKAVIPGSMGDSETPDHVGHRARLRSRLLEDADGLADYELVEY
LLALAIPRRDTKPLAKALLREFGSLAQLVSADPESLRRVDGLGDTGIAALKIVQASSLRLLKGEFRDKPLLSSWDALLDW
LRADMGPIDVERVRILYLNSRNMLIRDELASEGSIDQSAIYVREVIRRALELGASAIIIVHNHPSGSPEPSRQDIAVTRE
IAEAGTRLGIVLHDHIIVAGSDYRSFRALGLL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=201, Percent_Identity=29.8507462686567, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI2367100, Length=122, Percent_Identity=38.5245901639344, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1788997, Length=137, Percent_Identity=38.6861313868613, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1788312, Length=122, Percent_Identity=39.344262295082, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 29750; Mature: 29750

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPRPHPAQDNNAGNRVSLQQTGPLCHLVVLLPLSAPDKAVIPGSMGDSETPDHVGHRAR
CCCCCCCCCCCCCCCEEEEHHCCCCEEEEEEEECCCCCCEECCCCCCCCCCCHHHHHHHH
LRSRLLEDADGLADYELVEYLLALAIPRRDTKPLAKALLREFGSLAQLVSADPESLRRVD
HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
GLGDTGIAALKIVQASSLRLLKGEFRDKPLLSSWDALLDWLRADMGPIDVERVRILYLNS
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
RNMLIRDELASEGSIDQSAIYVREVIRRALELGASAIIIVHNHPSGSPEPSRQDIAVTRE
CCEEEHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHH
IAEAGTRLGIVLHDHIIVAGSDYRSFRALGLL
HHHCCCEEEEEEECEEEEECCCHHHHHHHCCC
>Mature Secondary Structure
MVPRPHPAQDNNAGNRVSLQQTGPLCHLVVLLPLSAPDKAVIPGSMGDSETPDHVGHRAR
CCCCCCCCCCCCCCCEEEEHHCCCCEEEEEEEECCCCCCEECCCCCCCCCCCHHHHHHHH
LRSRLLEDADGLADYELVEYLLALAIPRRDTKPLAKALLREFGSLAQLVSADPESLRRVD
HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
GLGDTGIAALKIVQASSLRLLKGEFRDKPLLSSWDALLDWLRADMGPIDVERVRILYLNS
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
RNMLIRDELASEGSIDQSAIYVREVIRRALELGASAIIIVHNHPSGSPEPSRQDIAVTRE
CCEEEHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHH
IAEAGTRLGIVLHDHIIVAGSDYRSFRALGLL
HHHCCCEEEEEEECEEEEECCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]