| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is ampG [H]
Identifier: 103486549
GI number: 103486549
Start: 1092389
End: 1093792
Strand: Direct
Name: ampG [H]
Synonym: Sala_1060
Alternate gene names: 103486549
Gene position: 1092389-1093792 (Clockwise)
Preceding gene: 103486548
Following gene: 103486558
Centisome position: 32.66
GC content: 63.89
Gene sequence:
>1404_bases TTGCCGCAGGATGTGACAACGGCGCCGCCGCAAGACTGGTGGCACAGCTTCCGCCCCTATCTGGAGCGTGCGCCGCTCGC GGCGTTGCTGCTCGGCATATCATCCGGTTTTCCCTACGCCATGATCGGCGCGACGCTCACGACGCGGCTGTCGCAGGACG GATTCCAGAAATCTTCGATCACCGCCTTTTCACTCGCTTTCCTCGTCTATAATTTCAAACCGCTCTGGGCGTGGCTTGTC GACGCGGTGCGCCTGCCGGGCGCGCGGTTCGTCGGCCAGCGCGTCAGCTGGATGATCCTTGCCGCCGCGCTTGTGATATT GGCGGTCGCAAACCTCGCGATGGTCGACCCCGCGCGTGTCGGCCAGTCGCCCGTCGGGCAGATGATGATCTGGCTCGGCC TCGGCCGCGAGGGCGAATTTGCTGCCCTTTTCGAAATGGCGATGGGGGCGGTGCTCGTCGGACTCGCCGGCGCGACGTTC GACATCGTGATCGACGCCTATCGGATCGAGATATTGAAGCCCGAACAGCTTGGCGTCGGGTCGGGCATGTCGCAATATGG TTGGCGCATCGGATCGGCGGGGGCGGGCGCCATCGCGCTGTTCGTGGCGGCACGCCAAGGCTGGGAAGCGGCGTATCTGG TTTGCGCGCTGCTCGCGCTACCGGCGGTGCTTGCGGCTCTGTGGGTCGGCGAGCCCGAGCGCCACCGCGAGGCGGTGCAG CGCGAGGGACGACCGGGCATCATCGCGGGTATCGTCGGCCCCTTCGCCGAATTTTTCAGCCGCCACGGCGCGTGGCTGGT GCTGCTGTTTATCCTGCTCCACAAAATCGGCGACACGCTCGCCAATCTGACGCTAAGGCTGCTGCTCGACGATCTGGGGT TCAGCAATGACGAGATTGCCATTTATGACGTCGGGATCGGCTTCTGGGCCTATCTGATCGGCATTTTTATCGGCGGCGCT CTCTATGCGCGGCTCGGCATGAAGAAATCGGTGCTGCTCAGCCTCATCCTGATGGCGATCAGCAATTTCAGCTTCGCGCT GCTCGCCGCCGCCGGGCACAGCAATTGGGGTCTCGCAGGCGCTATCGCGTTCGAAAATATCGCCAGCGGGATCGGGGGCG TTGTCGTCGTCGCCTATTTCTCGGCGCTATGCGACCTTCGCTTTACCGCCGCCCATTATGCACTCATCAGTTCGGCGGCC AGTATCGTCGGTCGCTTTCTGACCGGCACGACAGCGGGCGCGATGATGGATGCGTTCGGCAATGTGACTTTCTATCTGCT CACCGTGGCGGCGGCTTTGCCGGGCATCATCCTTTTCTGGCTGATGATGCGCAGCGGGCTGGTCGACCTGTCGGTGGGCA CGGCGGGCAGGGCAGGAAGCGCTGCGAAAGAGCCGGCCGCCTGA
Upstream 100 bases:
>100_bases GTGGGCGGGTCAATTACCCGCTTCCAATTTGGCAGGGAGGCTTTAGGCCCGTGACCTGGGTGCTGCGCCGGTCCTCGGCC GCGCCGGGGAGACGAACGAT
Downstream 100 bases:
>100_bases TGATTCATTCGGGCACCTCGCCATTCGCGGCAAGGACTTCGCCCGCGAGATAGAGCGAGCCGCAGATGAGGACGTCGCCG CGCGCGTCCGCAAGCTGGCG
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 467; Mature: 466
Protein sequence:
>467_residues MPQDVTTAPPQDWWHSFRPYLERAPLAALLLGISSGFPYAMIGATLTTRLSQDGFQKSSITAFSLAFLVYNFKPLWAWLV DAVRLPGARFVGQRVSWMILAAALVILAVANLAMVDPARVGQSPVGQMMIWLGLGREGEFAALFEMAMGAVLVGLAGATF DIVIDAYRIEILKPEQLGVGSGMSQYGWRIGSAGAGAIALFVAARQGWEAAYLVCALLALPAVLAALWVGEPERHREAVQ REGRPGIIAGIVGPFAEFFSRHGAWLVLLFILLHKIGDTLANLTLRLLLDDLGFSNDEIAIYDVGIGFWAYLIGIFIGGA LYARLGMKKSVLLSLILMAISNFSFALLAAAGHSNWGLAGAIAFENIASGIGGVVVVAYFSALCDLRFTAAHYALISSAA SIVGRFLTGTTAGAMMDAFGNVTFYLLTVAAALPGIILFWLMMRSGLVDLSVGTAGRAGSAAKEPAA
Sequences:
>Translated_467_residues MPQDVTTAPPQDWWHSFRPYLERAPLAALLLGISSGFPYAMIGATLTTRLSQDGFQKSSITAFSLAFLVYNFKPLWAWLV DAVRLPGARFVGQRVSWMILAAALVILAVANLAMVDPARVGQSPVGQMMIWLGLGREGEFAALFEMAMGAVLVGLAGATF DIVIDAYRIEILKPEQLGVGSGMSQYGWRIGSAGAGAIALFVAARQGWEAAYLVCALLALPAVLAALWVGEPERHREAVQ REGRPGIIAGIVGPFAEFFSRHGAWLVLLFILLHKIGDTLANLTLRLLLDDLGFSNDEIAIYDVGIGFWAYLIGIFIGGA LYARLGMKKSVLLSLILMAISNFSFALLAAAGHSNWGLAGAIAFENIASGIGGVVVVAYFSALCDLRFTAAHYALISSAA SIVGRFLTGTTAGAMMDAFGNVTFYLLTVAAALPGIILFWLMMRSGLVDLSVGTAGRAGSAAKEPAA >Mature_466_residues PQDVTTAPPQDWWHSFRPYLERAPLAALLLGISSGFPYAMIGATLTTRLSQDGFQKSSITAFSLAFLVYNFKPLWAWLVD AVRLPGARFVGQRVSWMILAAALVILAVANLAMVDPARVGQSPVGQMMIWLGLGREGEFAALFEMAMGAVLVGLAGATFD IVIDAYRIEILKPEQLGVGSGMSQYGWRIGSAGAGAIALFVAARQGWEAAYLVCALLALPAVLAALWVGEPERHREAVQR EGRPGIIAGIVGPFAEFFSRHGAWLVLLFILLHKIGDTLANLTLRLLLDDLGFSNDEIAIYDVGIGFWAYLIGIFIGGAL YARLGMKKSVLLSLILMAISNFSFALLAAAGHSNWGLAGAIAFENIASGIGGVVVVAYFSALCDLRFTAAHYALISSAAS IVGRFLTGTTAGAMMDAFGNVTFYLLTVAAALPGIILFWLMMRSGLVDLSVGTAGRAGSAAKEPAA
Specific function: Probably acts as a permease in the beta-lactamase induction system and in peptidoglycan recycling [H]
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
Organism=Escherichia coli, GI1786636, Length=421, Percent_Identity=33.2541567695962, Blast_Score=202, Evalue=4e-53,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004752 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 49569; Mature: 49438
Theoretical pI: Translated: 7.14; Mature: 7.14
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQDVTTAPPQDWWHSFRPYLERAPLAALLLGISSGFPYAMIGATLTTRLSQDGFQKSSI CCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHH TAFSLAFLVYNFKPLWAWLVDAVRLPGARFVGQRVSWMILAAALVILAVANLAMVDPARV HHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHC GQSPVGQMMIWLGLGREGEFAALFEMAMGAVLVGLAGATFDIVIDAYRIEILKPEQLGVG CCCCHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHEEEEHHEEEECCHHCCCC SGMSQYGWRIGSAGAGAIALFVAARQGWEAAYLVCALLALPAVLAALWVGEPERHREAVQ CCCHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH REGRPGIIAGIVGPFAEFFSRHGAWLVLLFILLHKIGDTLANLTLRLLLDDLGFSNDEIA HCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE IYDVGIGFWAYLIGIFIGGALYARLGMKKSVLLSLILMAISNFSFALLAAAGHSNWGLAG EEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH AIAFENIASGIGGVVVVAYFSALCDLRFTAAHYALISSAASIVGRFLTGTTAGAMMDAFG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC NVTFYLLTVAAALPGIILFWLMMRSGLVDLSVGTAGRAGSAAKEPAA CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCC >Mature Secondary Structure PQDVTTAPPQDWWHSFRPYLERAPLAALLLGISSGFPYAMIGATLTTRLSQDGFQKSSI CCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHH TAFSLAFLVYNFKPLWAWLVDAVRLPGARFVGQRVSWMILAAALVILAVANLAMVDPARV HHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHC GQSPVGQMMIWLGLGREGEFAALFEMAMGAVLVGLAGATFDIVIDAYRIEILKPEQLGVG CCCCHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHEEEEHHEEEECCHHCCCC SGMSQYGWRIGSAGAGAIALFVAARQGWEAAYLVCALLALPAVLAALWVGEPERHREAVQ CCCHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH REGRPGIIAGIVGPFAEFFSRHGAWLVLLFILLHKIGDTLANLTLRLLLDDLGFSNDEIA HCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE IYDVGIGFWAYLIGIFIGGALYARLGMKKSVLLSLILMAISNFSFALLAAAGHSNWGLAG EEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH AIAFENIASGIGGVVVVAYFSALCDLRFTAAHYALISSAASIVGRFLTGTTAGAMMDAFG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC NVTFYLLTVAAALPGIILFWLMMRSGLVDLSVGTAGRAGSAAKEPAA CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]