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The map label for this gene is rsmD [H]

Identifier: 103486546

GI number: 103486546

Start: 1090286

End: 1090828

Strand: Reverse

Name: rsmD [H]

Synonym: Sala_1057

Alternate gene names: 103486546

Gene position: 1090828-1090286 (Counterclockwise)

Preceding gene: 103486547

Following gene: 103486544

Centisome position: 32.61

GC content: 68.51

Gene sequence:

>543_bases
ATGAGGGTCATCGCCGGCGAATGGCGCGGTCGCAAGCTGCTCGCGCCCAGAAACGACGCCACCCGCCCGACCGCCGACCG
CACACGCGAAACGCTCTTCTCGATGCTGACCAGCCGCCTCGGCAGCTTCGAGGGGCTTTATGTCGCCGACCTTTTCGCGG
GGTCGGGCGCGTTGGGGATCGAGGCGCTGTCGCGCGGCGCCGAGCAATGCCTGTTTGCCGAACAGGACCGCGAAGCACTC
GATGCCCTCCGCAAAAACCTCGCCGCCCTCGGCGCAGGCCCACGCGCCGATGTCCGGGCCGGATCGGTGCTCGCGCTCGG
CCGCGCGCTGCGAACATTTGACCTGCTGCTCATCGACGCGCCCTATGCCACTGGCGCGGGCAGCGTCGCGCTCGACAAAC
TCGCCCGCCTCGGCTGGATCGCGCCCGACAGCTGGATTTCGATCGAGACGGGCGAGCGCGAGTCGGTCGAGATCGCGGGT
TTCGAGATCGACGCCGAACGCAGAGTCGGCAAGGCGAAACTCACGCTCCTGCGCCCACTCTAA

Upstream 100 bases:

>100_bases
GCACCCGCTATGGCGAGTTTACCCTCGCCGGACTCGACATGGGCGCGGTCGAGGTCGTGCCGCGCGACGAATTGTTCAAG
TTCCGGCGGCAACTGGCCAA

Downstream 100 bases:

>100_bases
CGGAGCCGCGCGCGCAGCCGCTGCAATTCGTCCGCAGGCACGGGCGCCAGCGCCGCAGCGGCCTTGCCCTCGCGCAGCCG
CTTGCGGTCCTTTTCCGACG

Product: hypothetical protein

Products: NA

Alternate protein names: 16S rRNA m2G966 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase [H]

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MRVIAGEWRGRKLLAPRNDATRPTADRTRETLFSMLTSRLGSFEGLYVADLFAGSGALGIEALSRGAEQCLFAEQDREAL
DALRKNLAALGAGPRADVRAGSVLALGRALRTFDLLLIDAPYATGAGSVALDKLARLGWIAPDSWISIETGERESVEIAG
FEIDAERRVGKAKLTLLRPL

Sequences:

>Translated_180_residues
MRVIAGEWRGRKLLAPRNDATRPTADRTRETLFSMLTSRLGSFEGLYVADLFAGSGALGIEALSRGAEQCLFAEQDREAL
DALRKNLAALGAGPRADVRAGSVLALGRALRTFDLLLIDAPYATGAGSVALDKLARLGWIAPDSWISIETGERESVEIAG
FEIDAERRVGKAKLTLLRPL
>Mature_180_residues
MRVIAGEWRGRKLLAPRNDATRPTADRTRETLFSMLTSRLGSFEGLYVADLFAGSGALGIEALSRGAEQCLFAEQDREAL
DALRKNLAALGAGPRADVRAGSVLALGRALRTFDLLLIDAPYATGAGSVALDKLARLGWIAPDSWISIETGERESVEIAG
FEIDAERRVGKAKLTLLRPL

Specific function: Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=150, Percent_Identity=39.3333333333333, Blast_Score=100, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: =2.1.1.171 [H]

Molecular weight: Translated: 19380; Mature: 19380

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVIAGEWRGRKLLAPRNDATRPTADRTRETLFSMLTSRLGSFEGLYVADLFAGSGALGI
CCEECCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH
EALSRGAEQCLFAEQDREALDALRKNLAALGAGPRADVRAGSVLALGRALRTFDLLLIDA
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEEEEEC
PYATGAGSVALDKLARLGWIAPDSWISIETGERESVEIAGFEIDAERRVGKAKLTLLRPL
CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEEECHHHCCCHHHEEEECCC
>Mature Secondary Structure
MRVIAGEWRGRKLLAPRNDATRPTADRTRETLFSMLTSRLGSFEGLYVADLFAGSGALGI
CCEECCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH
EALSRGAEQCLFAEQDREALDALRKNLAALGAGPRADVRAGSVLALGRALRTFDLLLIDA
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEEEEEC
PYATGAGSVALDKLARLGWIAPDSWISIETGERESVEIAGFEIDAERRVGKAKLTLLRPL
CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEEECHHHCCCHHHEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]