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The map label for this gene is yciL [C]

Identifier: 103486547

GI number: 103486547

Start: 1090825

End: 1091682

Strand: Reverse

Name: yciL [C]

Synonym: Sala_1058

Alternate gene names: 103486547

Gene position: 1091682-1090825 (Counterclockwise)

Preceding gene: 103486550

Following gene: 103486546

Centisome position: 32.63

GC content: 69.23

Gene sequence:

>858_bases
ATGACGACCCGCCGTCCGCCCCGCTCCGCCCCGCGCCCCGGCGCCGACCGCTCTGCCGCAGCGGCCCCGCGCGGCCGCCG
CGCCGCGCGTGCCGACGCGCCGCCGCGCAAGCTTCCCGCCGACACTGAACGCGAGGACGGGCCGCAGCGCATCGCCAAGC
TGCTCGCGCGCGCCGGGGTCGGCTCGCGCCGCGATGTCGAGCGGATGATCGAGGAAGGCCGGATCGCGCTCAACGGCGAA
GTCGTCACCCAGCCCGCGCCGCTCCTCGCGTCGCTTGAAGGGCTGACGGTCGACGGCAATCCGGTCGCCAAACCGGTTTC
GACGCGCCTCTATCGCTTCCACAAGCCGGCGGGCTGCCTCACGGCGGCGCGCGACCCCAAGGGCCGCAAGACGATCTATG
ACGTGCTGCCCAAGGGATTGCCGCGGCTGATGCCGGTCGGCCGGCTCGACTATAATACCGAGGGGTTGCTGCTGCTCACC
AACGACGGCGCGTTCAAGCGTCAACTCGAACTGCCCGCGAGCGGGGTCGAGCGCACCTACCGCGCCCGTGCCTTTGGCGA
CATCAGCCAGGCGCAGCTCGAGGAGCTGGTGATGGGGATCGAGATCGACGGGATTCGCTATGGGAAAATCGACGCCAATC
TCGAACGCCGCACCGGGCGCAACCAGTGGATCGAAATGACGCTGACCGAAGGCAAGAACCGCGAAGTGCGCCGCGTGCTC
GAACATCTGGGGTTGCAGGTCAGCCGCCTGATCCGCACCCGCTATGGCGAGTTTACCCTCGCCGGACTCGACATGGGCGC
GGTCGAGGTCGTGCCGCGCGACGAATTGTTCAAGTTCCGGCGGCAACTGGCCAAATGA

Upstream 100 bases:

>100_bases
TCTGCTTGCCATCGACGAAGCGACACTTTTCCGGCTATGAGCGTGGCCACGACGCCACAGTATTTTCCCGCATAACGACA
AGAAAGCCGCATCCGTTCCG

Downstream 100 bases:

>100_bases
GGGTCATCGCCGGCGAATGGCGCGGTCGCAAGCTGCTCGCGCCCAGAAACGACGCCACCCGCCCGACCGCCGACCGCACA
CGCGAAACGCTCTTCTCGAT

Product: pseudouridine synthase, Rsu

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MTTRRPPRSAPRPGADRSAAAAPRGRRAARADAPPRKLPADTEREDGPQRIAKLLARAGVGSRRDVERMIEEGRIALNGE
VVTQPAPLLASLEGLTVDGNPVAKPVSTRLYRFHKPAGCLTAARDPKGRKTIYDVLPKGLPRLMPVGRLDYNTEGLLLLT
NDGAFKRQLELPASGVERTYRARAFGDISQAQLEELVMGIEIDGIRYGKIDANLERRTGRNQWIEMTLTEGKNREVRRVL
EHLGLQVSRLIRTRYGEFTLAGLDMGAVEVVPRDELFKFRRQLAK

Sequences:

>Translated_285_residues
MTTRRPPRSAPRPGADRSAAAAPRGRRAARADAPPRKLPADTEREDGPQRIAKLLARAGVGSRRDVERMIEEGRIALNGE
VVTQPAPLLASLEGLTVDGNPVAKPVSTRLYRFHKPAGCLTAARDPKGRKTIYDVLPKGLPRLMPVGRLDYNTEGLLLLT
NDGAFKRQLELPASGVERTYRARAFGDISQAQLEELVMGIEIDGIRYGKIDANLERRTGRNQWIEMTLTEGKNREVRRVL
EHLGLQVSRLIRTRYGEFTLAGLDMGAVEVVPRDELFKFRRQLAK
>Mature_284_residues
TTRRPPRSAPRPGADRSAAAAPRGRRAARADAPPRKLPADTEREDGPQRIAKLLARAGVGSRRDVERMIEEGRIALNGEV
VTQPAPLLASLEGLTVDGNPVAKPVSTRLYRFHKPAGCLTAARDPKGRKTIYDVLPKGLPRLMPVGRLDYNTEGLLLLTN
DGAFKRQLELPASGVERTYRARAFGDISQAQLEELVMGIEIDGIRYGKIDANLERRTGRNQWIEMTLTEGKNREVRRVLE
HLGLQVSRLIRTRYGEFTLAGLDMGAVEVVPRDELFKFRRQLAK

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787524, Length=222, Percent_Identity=40.990990990991, Blast_Score=154, Evalue=7e-39,
Organism=Escherichia coli, GI1790453, Length=236, Percent_Identity=28.8135593220339, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788510, Length=211, Percent_Identity=28.436018957346, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87081838, Length=174, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 31702; Mature: 31571

Theoretical pI: Translated: 11.01; Mature: 11.01

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTRRPPRSAPRPGADRSAAAAPRGRRAARADAPPRKLPADTEREDGPQRIAKLLARAGV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
GSRRDVERMIEEGRIALNGEVVTQPAPLLASLEGLTVDGNPVAKPVSTRLYRFHKPAGCL
CCHHHHHHHHHCCCEEECCEEEECCCHHHHHCCCEEECCCCCCCHHHHHHHHHCCCCCHH
TAARDPKGRKTIYDVLPKGLPRLMPVGRLDYNTEGLLLLTNDGAFKRQLELPASGVERTY
CCCCCCCCCHHHHHHHHCCCHHHCCCCCCCCCCCCEEEEECCCCCEEEECCCHHHHHHHH
RARAFGDISQAQLEELVMGIEIDGIRYGKIDANLERRTGRNQWIEMTLTEGKNREVRRVL
HHHHHCCHHHHHHHHHHHCEEECCEEECCCCCCHHHCCCCCEEEEEEECCCCCHHHHHHH
EHLGLQVSRLIRTRYGEFTLAGLDMGAVEVVPRDELFKFRRQLAK
HHHCHHHHHHHHHHCCCEEEEECCCCCEEECCHHHHHHHHHHHCC
>Mature Secondary Structure 
TTRRPPRSAPRPGADRSAAAAPRGRRAARADAPPRKLPADTEREDGPQRIAKLLARAGV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
GSRRDVERMIEEGRIALNGEVVTQPAPLLASLEGLTVDGNPVAKPVSTRLYRFHKPAGCL
CCHHHHHHHHHCCCEEECCEEEECCCHHHHHCCCEEECCCCCCCHHHHHHHHHCCCCCHH
TAARDPKGRKTIYDVLPKGLPRLMPVGRLDYNTEGLLLLTNDGAFKRQLELPASGVERTY
CCCCCCCCCHHHHHHHHCCCHHHCCCCCCCCCCCCEEEEECCCCCEEEECCCHHHHHHHH
RARAFGDISQAQLEELVMGIEIDGIRYGKIDANLERRTGRNQWIEMTLTEGKNREVRRVL
HHHHHCCHHHHHHHHHHHCEEECCEEECCCCCCHHHCCCCCEEEEEEECCCCCHHHHHHH
EHLGLQVSRLIRTRYGEFTLAGLDMGAVEVVPRDELFKFRRQLAK
HHHCHHHHHHHHHHCCCEEEEECCCCCEEECCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA