| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486523
Identifier: 103486523
GI number: 103486523
Start: 1069018
End: 1069827
Strand: Direct
Name: 103486523
Synonym: Sala_1034
Alternate gene names: NA
Gene position: 1069018-1069827 (Clockwise)
Preceding gene: 103486522
Following gene: 103486524
Centisome position: 31.96
GC content: 66.05
Gene sequence:
>810_bases ATGAGCGAGATAGCGGGACTTTTGGCGGTCAATTTCACGGGGCTGCTGGCGGTGATCCTTCTCCTCTGGGCATTTGCGGC GACGATCCGCGACGTGTCGTTCATCGACGCCTTCTGGGCGTTCGGGATGGTGCTGCTCGCATGGGGGAGCGCCGCGCAGG CGGAGATCGTTGGCGCCCATGCAAAGCTGCTGCTCGGTCTCACGTCGCTGTGGGGGCTGCGGCTCGCGATCCATCTGGCG CTGCGCTGGGTGCGCGAGGGCGAAGACCCGCGCTACACCCGGATTTTGGCAAAAACGATGGAGACGCGCGGCTGGAGCTG GGCAAAGGCGGCGCTGCTCACCGTGTTCCTGACGCAGGCGCCGCTGCTGTTCGTCACCTGCCTGCCCGCACAGATCGGCA TCTGGGCGAGCGCGGGGGAGGGCGTCGGCATCATCGGCTGGGTCGGCGCGGCGGCGGCGCTGACGGGCATCGCGTTCGAG AGCATCGGCGACGCGCAGCTCCATGCCTTTCGCCGTAATCCCGCGAACAAGGGGCGGGTGCTCGACACGGGGCTGTGGCG CTATACGCGGCATCCCAATTATTTCGGAGACGCGCTGAGCTGGTGGGGCATCTGGATCGTCGTACTCGACATCGGCTGGC CGCCGGCGCTGGCGAGCCTGATTGGTCCGGTCTTTCTGACCTTCACGCTCACCAAATGGTCGGGCAAGGCGCTGCTCGAA AAGGGGCTGCACAAGACGCGGCCCGACTATGCCGCCTATGTTGAACGCACGTCGGGGTTCGTGCCATGGCCGCCAAAGAC GAAGGTCTAG
Upstream 100 bases:
>100_bases TGTTCGAGGTCTATAAAAGCTGTATCCCCAAATATCCCGACCGGGCGGTGCGCTCGATCGACGATATTGTCGGGGGCGAC ACGGACGAAGAGAGGCCGAT
Downstream 100 bases:
>100_bases GCGGCGCGGTCGCCGCGGCCGACGCGAAAGCACTGGGCGACGCGCCGCGCATTCGCGCGATCCTGATCGAAGCGGCGCGC GCGGAGCGCAGCATCAGCTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MSEIAGLLAVNFTGLLAVILLLWAFAATIRDVSFIDAFWAFGMVLLAWGSAAQAEIVGAHAKLLLGLTSLWGLRLAIHLA LRWVREGEDPRYTRILAKTMETRGWSWAKAALLTVFLTQAPLLFVTCLPAQIGIWASAGEGVGIIGWVGAAAALTGIAFE SIGDAQLHAFRRNPANKGRVLDTGLWRYTRHPNYFGDALSWWGIWIVVLDIGWPPALASLIGPVFLTFTLTKWSGKALLE KGLHKTRPDYAAYVERTSGFVPWPPKTKV
Sequences:
>Translated_269_residues MSEIAGLLAVNFTGLLAVILLLWAFAATIRDVSFIDAFWAFGMVLLAWGSAAQAEIVGAHAKLLLGLTSLWGLRLAIHLA LRWVREGEDPRYTRILAKTMETRGWSWAKAALLTVFLTQAPLLFVTCLPAQIGIWASAGEGVGIIGWVGAAAALTGIAFE SIGDAQLHAFRRNPANKGRVLDTGLWRYTRHPNYFGDALSWWGIWIVVLDIGWPPALASLIGPVFLTFTLTKWSGKALLE KGLHKTRPDYAAYVERTSGFVPWPPKTKV >Mature_268_residues SEIAGLLAVNFTGLLAVILLLWAFAATIRDVSFIDAFWAFGMVLLAWGSAAQAEIVGAHAKLLLGLTSLWGLRLAIHLAL RWVREGEDPRYTRILAKTMETRGWSWAKAALLTVFLTQAPLLFVTCLPAQIGIWASAGEGVGIIGWVGAAAALTGIAFES IGDAQLHAFRRNPANKGRVLDTGLWRYTRHPNYFGDALSWWGIWIVVLDIGWPPALASLIGPVFLTFTLTKWSGKALLEK GLHKTRPDYAAYVERTSGFVPWPPKTKV
Specific function: Unknown
COG id: COG3752
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI281365853, Length=211, Percent_Identity=28.9099526066351, Blast_Score=97, Evalue=9e-21, Organism=Drosophila melanogaster, GI28574404, Length=211, Percent_Identity=28.9099526066351, Blast_Score=97, Evalue=9e-21, Organism=Drosophila melanogaster, GI21355723, Length=211, Percent_Identity=28.9099526066351, Blast_Score=97, Evalue=9e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29466; Mature: 29335
Theoretical pI: Translated: 10.23; Mature: 10.23
Prosite motif: PS50244 S5A_REDUCTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEIAGLLAVNFTGLLAVILLLWAFAATIRDVSFIDAFWAFGMVLLAWGSAAQAEIVGAH CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH AKLLLGLTSLWGLRLAIHLALRWVREGEDPRYTRILAKTMETRGWSWAKAALLTVFLTQA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC PLLFVTCLPAQIGIWASAGEGVGIIGWVGAAAALTGIAFESIGDAQLHAFRRNPANKGRV HHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCE LDTGLWRYTRHPNYFGDALSWWGIWIVVLDIGWPPALASLIGPVFLTFTLTKWSGKALLE EECHHHHHCCCCCCHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHEECCCCCHHHHH KGLHKTRPDYAAYVERTSGFVPWPPKTKV HCHHHCCCHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SEIAGLLAVNFTGLLAVILLLWAFAATIRDVSFIDAFWAFGMVLLAWGSAAQAEIVGAH CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH AKLLLGLTSLWGLRLAIHLALRWVREGEDPRYTRILAKTMETRGWSWAKAALLTVFLTQA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC PLLFVTCLPAQIGIWASAGEGVGIIGWVGAAAALTGIAFESIGDAQLHAFRRNPANKGRV HHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCE LDTGLWRYTRHPNYFGDALSWWGIWIVVLDIGWPPALASLIGPVFLTFTLTKWSGKALLE EECHHHHHCCCCCCHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHEECCCCCHHHHH KGLHKTRPDYAAYVERTSGFVPWPPKTKV HCHHHCCCHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA