| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486509
Identifier: 103486509
GI number: 103486509
Start: 1053858
End: 1054640
Strand: Reverse
Name: 103486509
Synonym: Sala_1020
Alternate gene names: NA
Gene position: 1054640-1053858 (Counterclockwise)
Preceding gene: 103486510
Following gene: 103486508
Centisome position: 31.53
GC content: 65.9
Gene sequence:
>783_bases ATGACCCGATCAACCAAGGAACCCTCTATGCGATACTGGACTGCGGCCTTGCTGGGCCTCGCACTCGTGGCTTCTCCCGC CGTCGCCAGGACGAAAGCTCGACCCGTTGTCGAGGGCCAGACACCCCAGCCGCCGATCGCGTCGGACAATTATCCGTACC AGTTGTTCGTACCGCAGGGTTATCTGACCAATGCGAGGACGCAATATCCCTTGCTGATCTTCCTCCACGGGTCGGGCGAA CGCGGCGACGATGTGGCGAAGGTCAAGGTTCATGGCCCACCAAAGATCGCCGACCGCGACCCCGCCTTTCCCTTCCTCAC CGTCTCGCCGCTGCTCGGCGCCGATCAGGATTGGGACATTGCAAAGCTCGACCGGCTCGTCGACCATATTGCGGCGACCT ATCGCGTCGATCCCGCACGCATCTACCTCACCGGACTCAGCCGCGGCGGCCATGCGAGCTGGCGCTGGGCGATCGCCCAG CCGCGCCGCTTCGCCGCGGTCGCGCCCGTCGCGGGGCGCGGCAATCCCGGCGAGGCGTGTCGGTTGATGGACCTTCCCGT CTGGGCTTTCCACGGCGACCGCGACGATGTGGTGATCCCCGAAGGCAGCTTCGCCATGGCGCGGGCGATCCGTGCCTGCG GCGGGCGCAAGGCGCGGCTGACCATCTATCCCGACCTGGGCCACAATGCCTGGGATCCCGCCTATGACGATCCGGCGCTC TATGCCTGGCTGCTCGAACAGGCGCTCCCCTCCCCGACGAGCACCGACAAGGACAAGAAATGA
Upstream 100 bases:
>100_bases TGATGGCGGGCGCCGTCGTCACTACCCTGCCCGTCCTCATCCTCTTCCTCGCCCTCCAGCGCTTCTACTTGAGCGGCCTT CTCGCGGGGAGCGTCAAGGG
Downstream 100 bases:
>100_bases CGCAGACCATCTTTCCCGACGATTTCCTGTGGGGCGCGGCCACCGCCGCCTATCAGATCGAGGGATCGCCGCTTGCCGAT GGAGCGGGGCCGAGCATCTG
Product: hypothetical protein
Products: NA
Alternate protein names: Peptidase-Like Protein; Esterase; Dienelactone Hydrolase; Peptidase; Lipoprotein; A Hydrolase; PA14 Domain Protein; Carbohydrate Esterase Family 1 Domain Protein; PKD Domain Containing Protein; Phospholipase/Carboxylesterase Family; Alpha/Beta Fold Hydrolase; Peptidase-Like; Phospholipase/Carboxylesterase Protein; Phospholipase/Carboxylesterase Superfamily; Esterase PHB Depolymerase
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MTRSTKEPSMRYWTAALLGLALVASPAVARTKARPVVEGQTPQPPIASDNYPYQLFVPQGYLTNARTQYPLLIFLHGSGE RGDDVAKVKVHGPPKIADRDPAFPFLTVSPLLGADQDWDIAKLDRLVDHIAATYRVDPARIYLTGLSRGGHASWRWAIAQ PRRFAAVAPVAGRGNPGEACRLMDLPVWAFHGDRDDVVIPEGSFAMARAIRACGGRKARLTIYPDLGHNAWDPAYDDPAL YAWLLEQALPSPTSTDKDKK
Sequences:
>Translated_260_residues MTRSTKEPSMRYWTAALLGLALVASPAVARTKARPVVEGQTPQPPIASDNYPYQLFVPQGYLTNARTQYPLLIFLHGSGE RGDDVAKVKVHGPPKIADRDPAFPFLTVSPLLGADQDWDIAKLDRLVDHIAATYRVDPARIYLTGLSRGGHASWRWAIAQ PRRFAAVAPVAGRGNPGEACRLMDLPVWAFHGDRDDVVIPEGSFAMARAIRACGGRKARLTIYPDLGHNAWDPAYDDPAL YAWLLEQALPSPTSTDKDKK >Mature_259_residues TRSTKEPSMRYWTAALLGLALVASPAVARTKARPVVEGQTPQPPIASDNYPYQLFVPQGYLTNARTQYPLLIFLHGSGER GDDVAKVKVHGPPKIADRDPAFPFLTVSPLLGADQDWDIAKLDRLVDHIAATYRVDPARIYLTGLSRGGHASWRWAIAQP RRFAAVAPVAGRGNPGEACRLMDLPVWAFHGDRDDVVIPEGSFAMARAIRACGGRKARLTIYPDLGHNAWDPAYDDPALY AWLLEQALPSPTSTDKDKK
Specific function: Unknown
COG id: COG4099
COG function: function code R; Predicted peptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28549; Mature: 28418
Theoretical pI: Translated: 9.24; Mature: 9.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRSTKEPSMRYWTAALLGLALVASPAVARTKARPVVEGQTPQPPIASDNYPYQLFVPQG CCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCC YLTNARTQYPLLIFLHGSGERGDDVAKVKVHGPPKIADRDPAFPFLTVSPLLGADQDWDI CCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCH AKLDRLVDHIAATYRVDPARIYLTGLSRGGHASWRWAIAQPRRFAAVAPVAGRGNPGEAC HHHHHHHHHHHHHEECCCEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCEE RLMDLPVWAFHGDRDDVVIPEGSFAMARAIRACGGRKARLTIYPDLGHNAWDPAYDDPAL EEEECCEEEEECCCCCEEECCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCHHH YAWLLEQALPSPTSTDKDKK HHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure TRSTKEPSMRYWTAALLGLALVASPAVARTKARPVVEGQTPQPPIASDNYPYQLFVPQG CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCC YLTNARTQYPLLIFLHGSGERGDDVAKVKVHGPPKIADRDPAFPFLTVSPLLGADQDWDI CCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCH AKLDRLVDHIAATYRVDPARIYLTGLSRGGHASWRWAIAQPRRFAAVAPVAGRGNPGEAC HHHHHHHHHHHHHEECCCEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCEE RLMDLPVWAFHGDRDDVVIPEGSFAMARAIRACGGRKARLTIYPDLGHNAWDPAYDDPAL EEEECCEEEEECCCCCEEECCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCHHH YAWLLEQALPSPTSTDKDKK HHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA