Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486509

Identifier: 103486509

GI number: 103486509

Start: 1053858

End: 1054640

Strand: Reverse

Name: 103486509

Synonym: Sala_1020

Alternate gene names: NA

Gene position: 1054640-1053858 (Counterclockwise)

Preceding gene: 103486510

Following gene: 103486508

Centisome position: 31.53

GC content: 65.9

Gene sequence:

>783_bases
ATGACCCGATCAACCAAGGAACCCTCTATGCGATACTGGACTGCGGCCTTGCTGGGCCTCGCACTCGTGGCTTCTCCCGC
CGTCGCCAGGACGAAAGCTCGACCCGTTGTCGAGGGCCAGACACCCCAGCCGCCGATCGCGTCGGACAATTATCCGTACC
AGTTGTTCGTACCGCAGGGTTATCTGACCAATGCGAGGACGCAATATCCCTTGCTGATCTTCCTCCACGGGTCGGGCGAA
CGCGGCGACGATGTGGCGAAGGTCAAGGTTCATGGCCCACCAAAGATCGCCGACCGCGACCCCGCCTTTCCCTTCCTCAC
CGTCTCGCCGCTGCTCGGCGCCGATCAGGATTGGGACATTGCAAAGCTCGACCGGCTCGTCGACCATATTGCGGCGACCT
ATCGCGTCGATCCCGCACGCATCTACCTCACCGGACTCAGCCGCGGCGGCCATGCGAGCTGGCGCTGGGCGATCGCCCAG
CCGCGCCGCTTCGCCGCGGTCGCGCCCGTCGCGGGGCGCGGCAATCCCGGCGAGGCGTGTCGGTTGATGGACCTTCCCGT
CTGGGCTTTCCACGGCGACCGCGACGATGTGGTGATCCCCGAAGGCAGCTTCGCCATGGCGCGGGCGATCCGTGCCTGCG
GCGGGCGCAAGGCGCGGCTGACCATCTATCCCGACCTGGGCCACAATGCCTGGGATCCCGCCTATGACGATCCGGCGCTC
TATGCCTGGCTGCTCGAACAGGCGCTCCCCTCCCCGACGAGCACCGACAAGGACAAGAAATGA

Upstream 100 bases:

>100_bases
TGATGGCGGGCGCCGTCGTCACTACCCTGCCCGTCCTCATCCTCTTCCTCGCCCTCCAGCGCTTCTACTTGAGCGGCCTT
CTCGCGGGGAGCGTCAAGGG

Downstream 100 bases:

>100_bases
CGCAGACCATCTTTCCCGACGATTTCCTGTGGGGCGCGGCCACCGCCGCCTATCAGATCGAGGGATCGCCGCTTGCCGAT
GGAGCGGGGCCGAGCATCTG

Product: hypothetical protein

Products: NA

Alternate protein names: Peptidase-Like Protein; Esterase; Dienelactone Hydrolase; Peptidase; Lipoprotein; A Hydrolase; PA14 Domain Protein; Carbohydrate Esterase Family 1 Domain Protein; PKD Domain Containing Protein; Phospholipase/Carboxylesterase Family; Alpha/Beta Fold Hydrolase; Peptidase-Like; Phospholipase/Carboxylesterase Protein; Phospholipase/Carboxylesterase Superfamily; Esterase PHB Depolymerase

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MTRSTKEPSMRYWTAALLGLALVASPAVARTKARPVVEGQTPQPPIASDNYPYQLFVPQGYLTNARTQYPLLIFLHGSGE
RGDDVAKVKVHGPPKIADRDPAFPFLTVSPLLGADQDWDIAKLDRLVDHIAATYRVDPARIYLTGLSRGGHASWRWAIAQ
PRRFAAVAPVAGRGNPGEACRLMDLPVWAFHGDRDDVVIPEGSFAMARAIRACGGRKARLTIYPDLGHNAWDPAYDDPAL
YAWLLEQALPSPTSTDKDKK

Sequences:

>Translated_260_residues
MTRSTKEPSMRYWTAALLGLALVASPAVARTKARPVVEGQTPQPPIASDNYPYQLFVPQGYLTNARTQYPLLIFLHGSGE
RGDDVAKVKVHGPPKIADRDPAFPFLTVSPLLGADQDWDIAKLDRLVDHIAATYRVDPARIYLTGLSRGGHASWRWAIAQ
PRRFAAVAPVAGRGNPGEACRLMDLPVWAFHGDRDDVVIPEGSFAMARAIRACGGRKARLTIYPDLGHNAWDPAYDDPAL
YAWLLEQALPSPTSTDKDKK
>Mature_259_residues
TRSTKEPSMRYWTAALLGLALVASPAVARTKARPVVEGQTPQPPIASDNYPYQLFVPQGYLTNARTQYPLLIFLHGSGER
GDDVAKVKVHGPPKIADRDPAFPFLTVSPLLGADQDWDIAKLDRLVDHIAATYRVDPARIYLTGLSRGGHASWRWAIAQP
RRFAAVAPVAGRGNPGEACRLMDLPVWAFHGDRDDVVIPEGSFAMARAIRACGGRKARLTIYPDLGHNAWDPAYDDPALY
AWLLEQALPSPTSTDKDKK

Specific function: Unknown

COG id: COG4099

COG function: function code R; Predicted peptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28549; Mature: 28418

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRSTKEPSMRYWTAALLGLALVASPAVARTKARPVVEGQTPQPPIASDNYPYQLFVPQG
CCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCC
YLTNARTQYPLLIFLHGSGERGDDVAKVKVHGPPKIADRDPAFPFLTVSPLLGADQDWDI
CCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCH
AKLDRLVDHIAATYRVDPARIYLTGLSRGGHASWRWAIAQPRRFAAVAPVAGRGNPGEAC
HHHHHHHHHHHHHEECCCEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCEE
RLMDLPVWAFHGDRDDVVIPEGSFAMARAIRACGGRKARLTIYPDLGHNAWDPAYDDPAL
EEEECCEEEEECCCCCEEECCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCHHH
YAWLLEQALPSPTSTDKDKK
HHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TRSTKEPSMRYWTAALLGLALVASPAVARTKARPVVEGQTPQPPIASDNYPYQLFVPQG
CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCC
YLTNARTQYPLLIFLHGSGERGDDVAKVKVHGPPKIADRDPAFPFLTVSPLLGADQDWDI
CCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCH
AKLDRLVDHIAATYRVDPARIYLTGLSRGGHASWRWAIAQPRRFAAVAPVAGRGNPGEAC
HHHHHHHHHHHHHEECCCEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCEE
RLMDLPVWAFHGDRDDVVIPEGSFAMARAIRACGGRKARLTIYPDLGHNAWDPAYDDPAL
EEEECCEEEEECCCCCEEECCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCHHH
YAWLLEQALPSPTSTDKDKK
HHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA