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The map label for this gene is araQ [H]

Identifier: 103486510

GI number: 103486510

Start: 1054637

End: 1055377

Strand: Reverse

Name: araQ [H]

Synonym: Sala_1021

Alternate gene names: 103486510

Gene position: 1055377-1054637 (Counterclockwise)

Preceding gene: 103486511

Following gene: 103486509

Centisome position: 31.55

GC content: 64.78

Gene sequence:

>741_bases
ATGCTGTCGGTCAGCTTCATGGCGCGCGGCGAAGCGGCGCAATTCCCGCCGCCGCTGCTGCCGGGCGATCCGACGCTCGA
CAATTACCGCGCCCTGTTCGGCACCTTTGGCGTCGGGCGTTTCCTTCTTAACAGCCTGCTCGTCTCGACGCTCGCGACGC
TGCTCGCGCTGCTTTTCACGATCCCGGCGGGCTATGCCTTTGCCAAGCTGCGCTTCAAGGGCCGCGATGCGACGTTCCGC
CTGCTCGTCGCCGCGCTTGTCGTGCCGGGCCAGATCGGGATGCTGCCCCTGTTCCTCGAACTCAAGGCGATGGGGCTGGT
CAACAGCTATGCCGGCGCGCTGGTGCCCTGGCTTGCGGGGATTTTCGGCATCTTTCTCGTCCGCCAATATAGCCTGTCGA
TCCCCGACGAAATGCTCGAAGCGGCGCGCATCGACGGCGCGAGCGAGGCGCAGATACTGCGCCGCATCGTGCTGCCGATC
CTCACCCCGATCATCGTCACGCTCGCGCTGTTCGTGTTCCTCGGCAGCTGGAACGATTTCATGTGGCCGCTGATCGTCCT
CGCCGATCAGGATCTTTACACCCTCCCGGTCGCCCTCGCCGCACTCAGCCGCGAGCATGTGCAGGACAATGAACTGATGA
TGGCGGGCGCCGTCGTCACTACCCTGCCCGTCCTCATCCTCTTCCTCGCCCTCCAGCGCTTCTACTTGAGCGGCCTTCTC
GCGGGGAGCGTCAAGGGATGA

Upstream 100 bases:

>100_bases
GGCTGGCAAGACGGAGCGGCGCGATATGAGCCTTCGCCGCTGGACCGTCACGCTGCTCGCCGCATTCGTCGCGCTGCTCA
CCATCGCGCCGCTGCTCTGG

Downstream 100 bases:

>100_bases
CCCGATCAACCAAGGAACCCTCTATGCGATACTGGACTGCGGCCTTGCTGGGCCTCGCACTCGTGGCTTCTCCCGCCGTC
GCCAGGACGAAAGCTCGACC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MLSVSFMARGEAAQFPPPLLPGDPTLDNYRALFGTFGVGRFLLNSLLVSTLATLLALLFTIPAGYAFAKLRFKGRDATFR
LLVAALVVPGQIGMLPLFLELKAMGLVNSYAGALVPWLAGIFGIFLVRQYSLSIPDEMLEAARIDGASEAQILRRIVLPI
LTPIIVTLALFVFLGSWNDFMWPLIVLADQDLYTLPVALAALSREHVQDNELMMAGAVVTTLPVLILFLALQRFYLSGLL
AGSVKG

Sequences:

>Translated_246_residues
MLSVSFMARGEAAQFPPPLLPGDPTLDNYRALFGTFGVGRFLLNSLLVSTLATLLALLFTIPAGYAFAKLRFKGRDATFR
LLVAALVVPGQIGMLPLFLELKAMGLVNSYAGALVPWLAGIFGIFLVRQYSLSIPDEMLEAARIDGASEAQILRRIVLPI
LTPIIVTLALFVFLGSWNDFMWPLIVLADQDLYTLPVALAALSREHVQDNELMMAGAVVTTLPVLILFLALQRFYLSGLL
AGSVKG
>Mature_246_residues
MLSVSFMARGEAAQFPPPLLPGDPTLDNYRALFGTFGVGRFLLNSLLVSTLATLLALLFTIPAGYAFAKLRFKGRDATFR
LLVAALVVPGQIGMLPLFLELKAMGLVNSYAGALVPWLAGIFGIFLVRQYSLSIPDEMLEAARIDGASEAQILRRIVLPI
LTPIIVTLALFVFLGSWNDFMWPLIVLADQDLYTLPVALAALSREHVQDNELMMAGAVVTTLPVLILFLALQRFYLSGLL
AGSVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=250, Percent_Identity=33.6, Blast_Score=120, Evalue=7e-29,
Organism=Escherichia coli, GI1789860, Length=234, Percent_Identity=29.4871794871795, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1790464, Length=217, Percent_Identity=26.2672811059908, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 26697; Mature: 26697

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSVSFMARGEAAQFPPPLLPGDPTLDNYRALFGTFGVGRFLLNSLLVSTLATLLALLFT
CCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPAGYAFAKLRFKGRDATFRLLVAALVVPGQIGMLPLFLELKAMGLVNSYAGALVPWLAG
HCCCHHHHEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFGIFLVRQYSLSIPDEMLEAARIDGASEAQILRRIVLPILTPIIVTLALFVFLGSWNDF
HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
MWPLIVLADQDLYTLPVALAALSREHVQDNELMMAGAVVTTLPVLILFLALQRFYLSGLL
HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGSVKG
HCCCCC
>Mature Secondary Structure
MLSVSFMARGEAAQFPPPLLPGDPTLDNYRALFGTFGVGRFLLNSLLVSTLATLLALLFT
CCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPAGYAFAKLRFKGRDATFRLLVAALVVPGQIGMLPLFLELKAMGLVNSYAGALVPWLAG
HCCCHHHHEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFGIFLVRQYSLSIPDEMLEAARIDGASEAQILRRIVLPILTPIIVTLALFVFLGSWNDF
HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
MWPLIVLADQDLYTLPVALAALSREHVQDNELMMAGAVVTTLPVLILFLALQRFYLSGLL
HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGSVKG
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]