| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486507
Identifier: 103486507
GI number: 103486507
Start: 1051646
End: 1052515
Strand: Reverse
Name: 103486507
Synonym: Sala_1018
Alternate gene names: NA
Gene position: 1052515-1051646 (Counterclockwise)
Preceding gene: 103486508
Following gene: 103486506
Centisome position: 31.46
GC content: 68.16
Gene sequence:
>870_bases ATGCGCTGGCTGGTGCCGTTGCTCGCCCTCGCGCTCGCGCTCCCCGCCGCGGCGAAGGAACGCGCCGACCGGTTCAGCGC GATGACCTATAACATCCGCCTCGACCTTGCATCGGACGGCGACAACGCCTGGCCGCACCGGCGCGGCGCCGTCACCAACC TCGTCGGCTATTATTCGCCCGACCTGATCGGGATGCAGGAAGTGTTGCTGCACCAGAAGCAGGCGATCGAGGCCGACCTG CCCCGCTACATCTTCGTCGGCGTCGCGCGCGACGACGGCAAGGAGCAGGGCGAGTTTTCGCCGCTCGGTTTCCGCCGCGA CCGGTTCACGCTGGTCGCGTCGGGCACCTTCTGGCTGTCGCCCACTCCCGACGCGCCGAGCAGGGGCTGGGACGCCGCCT TGCCGCGCATCGCAAGCTGGGCCCGGCTGAAAGACAGGAGCTCGCGCCTGACGCTGCTCGCCGTGAACACGCATTTCGAC CATGTCGGGAAAGAGGCGCGCCTTGAAAGCGCACGACAGCTCCGCCGCTGGATCGGCGCAAACCGGAGGCGCGGCGAAAC GGTGGTGCTGATGGGCGATTTCAACAGTCCCGTGGACAGTCCCCCGCACGACGCGATCACCGACCCGGCGCCGGGCCCGG CTGCGCTGCACGACACGCTGGCGATCAGTCGCACCCCGCATTTCGGCCCGCTCGGCACCTTCACCGGCTTCGATATCGAG CGGAACGACCCCAGCCCGATCGACCATATCTTCGTGAACGACGGCACGGCGGTGCTTCGTCATGCGACGCTGACGCAGCA AACGGGCGGCAAGCTGCCATCGGATCATTATCCGGTGCTCGCCGACCTGTGCGTGGGCAGGGGGTGCTGA
Upstream 100 bases:
>100_bases GCATCGTCCACGTCGATTATGAAACGCAGGTGCGCACGCCGAAACGCAGCGCGCGCTTCTATTCGAGTGTCATCCGGTCA AACGGCGGGAACCTCGGCTG
Downstream 100 bases:
>100_bases CGATGCCGCGCTGCCTGACGATGCTGTTCGCGGCGATGCTTGCCGCCTGTTCGGCGGCGCCGCGGCCGACGCCCGCCGCG GCGCCGCCTTTCACGCGCGA
Product: endonuclease/exonuclease/phosphatase
Products: NA
Alternate protein names: Endonuclease/Exonuclease/Phosphatase Family Protein; Endonuclease/Exonuclease/Phosphatase Family; Metal-Dependent Hydrolase; Beta-Glucanase/Beta-Glucan Synthetase; Secreted Protein
Number of amino acids: Translated: 289; Mature: 289
Protein sequence:
>289_residues MRWLVPLLALALALPAAAKERADRFSAMTYNIRLDLASDGDNAWPHRRGAVTNLVGYYSPDLIGMQEVLLHQKQAIEADL PRYIFVGVARDDGKEQGEFSPLGFRRDRFTLVASGTFWLSPTPDAPSRGWDAALPRIASWARLKDRSSRLTLLAVNTHFD HVGKEARLESARQLRRWIGANRRRGETVVLMGDFNSPVDSPPHDAITDPAPGPAALHDTLAISRTPHFGPLGTFTGFDIE RNDPSPIDHIFVNDGTAVLRHATLTQQTGGKLPSDHYPVLADLCVGRGC
Sequences:
>Translated_289_residues MRWLVPLLALALALPAAAKERADRFSAMTYNIRLDLASDGDNAWPHRRGAVTNLVGYYSPDLIGMQEVLLHQKQAIEADL PRYIFVGVARDDGKEQGEFSPLGFRRDRFTLVASGTFWLSPTPDAPSRGWDAALPRIASWARLKDRSSRLTLLAVNTHFD HVGKEARLESARQLRRWIGANRRRGETVVLMGDFNSPVDSPPHDAITDPAPGPAALHDTLAISRTPHFGPLGTFTGFDIE RNDPSPIDHIFVNDGTAVLRHATLTQQTGGKLPSDHYPVLADLCVGRGC >Mature_289_residues MRWLVPLLALALALPAAAKERADRFSAMTYNIRLDLASDGDNAWPHRRGAVTNLVGYYSPDLIGMQEVLLHQKQAIEADL PRYIFVGVARDDGKEQGEFSPLGFRRDRFTLVASGTFWLSPTPDAPSRGWDAALPRIASWARLKDRSSRLTLLAVNTHFD HVGKEARLESARQLRRWIGANRRRGETVVLMGDFNSPVDSPPHDAITDPAPGPAALHDTLAISRTPHFGPLGTFTGFDIE RNDPSPIDHIFVNDGTAVLRHATLTQQTGGKLPSDHYPVLADLCVGRGC
Specific function: Unknown
COG id: COG3568
COG function: function code R; Metal-dependent hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31827; Mature: 31827
Theoretical pI: Translated: 7.79; Mature: 7.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRWLVPLLALALALPAAAKERADRFSAMTYNIRLDLASDGDNAWPHRRGAVTNLVGYYSP CCHHHHHHHHHHHCCHHHHHHHHHHEEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHCCC DLIGMQEVLLHQKQAIEADLPRYIFVGVARDDGKEQGEFSPLGFRRDRFTLVASGTFWLS CCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCEEEEC PTPDAPSRGWDAALPRIASWARLKDRSSRLTLLAVNTHFDHVGKEARLESARQLRRWIGA CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHHHHHHHHHHCC NRRRGETVVLMGDFNSPVDSPPHDAITDPAPGPAALHDTLAISRTPHFGPLGTFTGFDIE CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHEEECCCCCCCCCCCCCCCEEC RNDPSPIDHIFVNDGTAVLRHATLTQQTGGKLPSDHYPVLADLCVGRGC CCCCCCCCEEEECCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCC >Mature Secondary Structure MRWLVPLLALALALPAAAKERADRFSAMTYNIRLDLASDGDNAWPHRRGAVTNLVGYYSP CCHHHHHHHHHHHCCHHHHHHHHHHEEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHCCC DLIGMQEVLLHQKQAIEADLPRYIFVGVARDDGKEQGEFSPLGFRRDRFTLVASGTFWLS CCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCEEEEC PTPDAPSRGWDAALPRIASWARLKDRSSRLTLLAVNTHFDHVGKEARLESARQLRRWIGA CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHHHHHHHHHHCC NRRRGETVVLMGDFNSPVDSPPHDAITDPAPGPAALHDTLAISRTPHFGPLGTFTGFDIE CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHEEECCCCCCCCCCCCCCCEEC RNDPSPIDHIFVNDGTAVLRHATLTQQTGGKLPSDHYPVLADLCVGRGC CCCCCCCCEEEECCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA