Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486507

Identifier: 103486507

GI number: 103486507

Start: 1051646

End: 1052515

Strand: Reverse

Name: 103486507

Synonym: Sala_1018

Alternate gene names: NA

Gene position: 1052515-1051646 (Counterclockwise)

Preceding gene: 103486508

Following gene: 103486506

Centisome position: 31.46

GC content: 68.16

Gene sequence:

>870_bases
ATGCGCTGGCTGGTGCCGTTGCTCGCCCTCGCGCTCGCGCTCCCCGCCGCGGCGAAGGAACGCGCCGACCGGTTCAGCGC
GATGACCTATAACATCCGCCTCGACCTTGCATCGGACGGCGACAACGCCTGGCCGCACCGGCGCGGCGCCGTCACCAACC
TCGTCGGCTATTATTCGCCCGACCTGATCGGGATGCAGGAAGTGTTGCTGCACCAGAAGCAGGCGATCGAGGCCGACCTG
CCCCGCTACATCTTCGTCGGCGTCGCGCGCGACGACGGCAAGGAGCAGGGCGAGTTTTCGCCGCTCGGTTTCCGCCGCGA
CCGGTTCACGCTGGTCGCGTCGGGCACCTTCTGGCTGTCGCCCACTCCCGACGCGCCGAGCAGGGGCTGGGACGCCGCCT
TGCCGCGCATCGCAAGCTGGGCCCGGCTGAAAGACAGGAGCTCGCGCCTGACGCTGCTCGCCGTGAACACGCATTTCGAC
CATGTCGGGAAAGAGGCGCGCCTTGAAAGCGCACGACAGCTCCGCCGCTGGATCGGCGCAAACCGGAGGCGCGGCGAAAC
GGTGGTGCTGATGGGCGATTTCAACAGTCCCGTGGACAGTCCCCCGCACGACGCGATCACCGACCCGGCGCCGGGCCCGG
CTGCGCTGCACGACACGCTGGCGATCAGTCGCACCCCGCATTTCGGCCCGCTCGGCACCTTCACCGGCTTCGATATCGAG
CGGAACGACCCCAGCCCGATCGACCATATCTTCGTGAACGACGGCACGGCGGTGCTTCGTCATGCGACGCTGACGCAGCA
AACGGGCGGCAAGCTGCCATCGGATCATTATCCGGTGCTCGCCGACCTGTGCGTGGGCAGGGGGTGCTGA

Upstream 100 bases:

>100_bases
GCATCGTCCACGTCGATTATGAAACGCAGGTGCGCACGCCGAAACGCAGCGCGCGCTTCTATTCGAGTGTCATCCGGTCA
AACGGCGGGAACCTCGGCTG

Downstream 100 bases:

>100_bases
CGATGCCGCGCTGCCTGACGATGCTGTTCGCGGCGATGCTTGCCGCCTGTTCGGCGGCGCCGCGGCCGACGCCCGCCGCG
GCGCCGCCTTTCACGCGCGA

Product: endonuclease/exonuclease/phosphatase

Products: NA

Alternate protein names: Endonuclease/Exonuclease/Phosphatase Family Protein; Endonuclease/Exonuclease/Phosphatase Family; Metal-Dependent Hydrolase; Beta-Glucanase/Beta-Glucan Synthetase; Secreted Protein

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MRWLVPLLALALALPAAAKERADRFSAMTYNIRLDLASDGDNAWPHRRGAVTNLVGYYSPDLIGMQEVLLHQKQAIEADL
PRYIFVGVARDDGKEQGEFSPLGFRRDRFTLVASGTFWLSPTPDAPSRGWDAALPRIASWARLKDRSSRLTLLAVNTHFD
HVGKEARLESARQLRRWIGANRRRGETVVLMGDFNSPVDSPPHDAITDPAPGPAALHDTLAISRTPHFGPLGTFTGFDIE
RNDPSPIDHIFVNDGTAVLRHATLTQQTGGKLPSDHYPVLADLCVGRGC

Sequences:

>Translated_289_residues
MRWLVPLLALALALPAAAKERADRFSAMTYNIRLDLASDGDNAWPHRRGAVTNLVGYYSPDLIGMQEVLLHQKQAIEADL
PRYIFVGVARDDGKEQGEFSPLGFRRDRFTLVASGTFWLSPTPDAPSRGWDAALPRIASWARLKDRSSRLTLLAVNTHFD
HVGKEARLESARQLRRWIGANRRRGETVVLMGDFNSPVDSPPHDAITDPAPGPAALHDTLAISRTPHFGPLGTFTGFDIE
RNDPSPIDHIFVNDGTAVLRHATLTQQTGGKLPSDHYPVLADLCVGRGC
>Mature_289_residues
MRWLVPLLALALALPAAAKERADRFSAMTYNIRLDLASDGDNAWPHRRGAVTNLVGYYSPDLIGMQEVLLHQKQAIEADL
PRYIFVGVARDDGKEQGEFSPLGFRRDRFTLVASGTFWLSPTPDAPSRGWDAALPRIASWARLKDRSSRLTLLAVNTHFD
HVGKEARLESARQLRRWIGANRRRGETVVLMGDFNSPVDSPPHDAITDPAPGPAALHDTLAISRTPHFGPLGTFTGFDIE
RNDPSPIDHIFVNDGTAVLRHATLTQQTGGKLPSDHYPVLADLCVGRGC

Specific function: Unknown

COG id: COG3568

COG function: function code R; Metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31827; Mature: 31827

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWLVPLLALALALPAAAKERADRFSAMTYNIRLDLASDGDNAWPHRRGAVTNLVGYYSP
CCHHHHHHHHHHHCCHHHHHHHHHHEEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHCCC
DLIGMQEVLLHQKQAIEADLPRYIFVGVARDDGKEQGEFSPLGFRRDRFTLVASGTFWLS
CCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCEEEEC
PTPDAPSRGWDAALPRIASWARLKDRSSRLTLLAVNTHFDHVGKEARLESARQLRRWIGA
CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHHHHHHHHHHCC
NRRRGETVVLMGDFNSPVDSPPHDAITDPAPGPAALHDTLAISRTPHFGPLGTFTGFDIE
CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHEEECCCCCCCCCCCCCCCEEC
RNDPSPIDHIFVNDGTAVLRHATLTQQTGGKLPSDHYPVLADLCVGRGC
CCCCCCCCEEEECCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MRWLVPLLALALALPAAAKERADRFSAMTYNIRLDLASDGDNAWPHRRGAVTNLVGYYSP
CCHHHHHHHHHHHCCHHHHHHHHHHEEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHCCC
DLIGMQEVLLHQKQAIEADLPRYIFVGVARDDGKEQGEFSPLGFRRDRFTLVASGTFWLS
CCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCEEEEC
PTPDAPSRGWDAALPRIASWARLKDRSSRLTLLAVNTHFDHVGKEARLESARQLRRWIGA
CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHHHHHHHHHHCC
NRRRGETVVLMGDFNSPVDSPPHDAITDPAPGPAALHDTLAISRTPHFGPLGTFTGFDIE
CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHEEECCCCCCCCCCCCCCCEEC
RNDPSPIDHIFVNDGTAVLRHATLTQQTGGKLPSDHYPVLADLCVGRGC
CCCCCCCCEEEECCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA