| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486492
Identifier: 103486492
GI number: 103486492
Start: 1026074
End: 1026931
Strand: Reverse
Name: 103486492
Synonym: Sala_1003
Alternate gene names: NA
Gene position: 1026931-1026074 (Counterclockwise)
Preceding gene: 103486493
Following gene: 103486491
Centisome position: 30.7
GC content: 72.38
Gene sequence:
>858_bases ATGGCGATCAGGCCCGCGCTGATCGGCGCGGCGCTGATCGGCGCCGCGGGGGTGCTGGCGGCGGCGCCCGCCGATCGCGG CCCCCCGCATCAAGGCGACGTGCCGCAGCGCATCCTGTCGCTGAATCTCTGCACCGACCAGCTGCTGCTCGCGCTTGCCG ACCGCCGCCAGATCGTCGGGCTGACGCACAATGCGCGCGATCCCGGCCTGTCGGCGGTGCCCACGCTTGCGCGCGGGCTG CCGCAGCACCACGGTTCGGCCGAACAGCTGCTCGCGGCGAACCCCGACCTGGTGGTCGGAATGCCCGCGCGCGGCAGCGC TGCCCTCGCGGCGCTGCCCGATGCGCGCTATCCCCTGCTCGACGTGGTGCCCGCCAACCATCTCGACGACATCTATCGCG CGATCCGCCAGACCGCCGCCGCGGTCGGTCATCCCGAACGCGGCGACGCGCTGATCGCCGACATGCAGGGCGATCTCGCC GCGCTGCCGCGTCCCGGCCGCGGGCGTGTCGCGGCCTATTACCAGCGCCGCGGCTATATGACCGGCACCGGCACGCTGGT CGATGATCTGATGACGCGCGCGGGCCTCGTCAATCTGGCGGCCAGGCTCGGCAGGCCCCCGCTCGCGCAGGTCAGCCTGG AGGAGATGGTCGCCGCCGATCCCGATTTCCTGATCGTCGAAAGCGCGACCGATGCCGTGACCGATCAGGGCAGCGAAATG CTGCATCATCCGGCGCTCGACCATATTCCGCGCATTTCGGTCCCGCAGGCGTGGACGGTGTGCGGCGGCCCCGCCTATGC GCGCGCCGCGCAGAGCATCGCCGCGCAGATCGTCCGGCACGACGGCGGCGGCGCATGA
Upstream 100 bases:
>100_bases GTTCAACTTTGGCACCTATGGCCGCGCCGCCCATGGCGGGGTGCGGGCGCGATTCTGATGGCGCGGCGGGGGAGATGGGT ATGAGCGGGATAGCGAGGTG
Downstream 100 bases:
>100_bases GCCGCGTCGCCCCGCCACGCTGGTCGCTGATGACCGGGCTTCTCGCGCTCACCCTCGCCGCGGCCCTGGCCTCGCTGCTC TTCGGCCCGGTCGCGCTGTC
Product: periplasmic binding protein
Products: NA
Alternate protein names: Fe3+-Hydroxamate ABC Transporter Periplasmic Protein; ABC-Type Transport System Periplasmic Component; Fe ABC Transporter; ABC Transporter Periplasmic Protein
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MAIRPALIGAALIGAAGVLAAAPADRGPPHQGDVPQRILSLNLCTDQLLLALADRRQIVGLTHNARDPGLSAVPTLARGL PQHHGSAEQLLAANPDLVVGMPARGSAALAALPDARYPLLDVVPANHLDDIYRAIRQTAAAVGHPERGDALIADMQGDLA ALPRPGRGRVAAYYQRRGYMTGTGTLVDDLMTRAGLVNLAARLGRPPLAQVSLEEMVAADPDFLIVESATDAVTDQGSEM LHHPALDHIPRISVPQAWTVCGGPAYARAAQSIAAQIVRHDGGGA
Sequences:
>Translated_285_residues MAIRPALIGAALIGAAGVLAAAPADRGPPHQGDVPQRILSLNLCTDQLLLALADRRQIVGLTHNARDPGLSAVPTLARGL PQHHGSAEQLLAANPDLVVGMPARGSAALAALPDARYPLLDVVPANHLDDIYRAIRQTAAAVGHPERGDALIADMQGDLA ALPRPGRGRVAAYYQRRGYMTGTGTLVDDLMTRAGLVNLAARLGRPPLAQVSLEEMVAADPDFLIVESATDAVTDQGSEM LHHPALDHIPRISVPQAWTVCGGPAYARAAQSIAAQIVRHDGGGA >Mature_284_residues AIRPALIGAALIGAAGVLAAAPADRGPPHQGDVPQRILSLNLCTDQLLLALADRRQIVGLTHNARDPGLSAVPTLARGLP QHHGSAEQLLAANPDLVVGMPARGSAALAALPDARYPLLDVVPANHLDDIYRAIRQTAAAVGHPERGDALIADMQGDLAA LPRPGRGRVAAYYQRRGYMTGTGTLVDDLMTRAGLVNLAARLGRPPLAQVSLEEMVAADPDFLIVESATDAVTDQGSEML HHPALDHIPRISVPQAWTVCGGPAYARAAQSIAAQIVRHDGGGA
Specific function: Unknown
COG id: COG0614
COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29656; Mature: 29525
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: PS50983 FE_B12_PBP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIRPALIGAALIGAAGVLAAAPADRGPPHQGDVPQRILSLNLCTDQLLLALADRRQIVG CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHEEE LTHNARDPGLSAVPTLARGLPQHHGSAEQLLAANPDLVVGMPARGSAALAALPDARYPLL ECCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCEEEECCCCCCCEEEECCCCCCCEE DVVPANHLDDIYRAIRQTAAAVGHPERGDALIADMQGDLAALPRPGRGRVAAYYQRRGYM ECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHCCCCCCCCEEHHHHHCCCC TGTGTLVDDLMTRAGLVNLAARLGRPPLAQVSLEEMVAADPDFLIVESATDAVTDQGSEM CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHCCCHHH LHHPALDHIPRISVPQAWTVCGGPAYARAAQSIAAQIVRHDGGGA HHCCHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure AIRPALIGAALIGAAGVLAAAPADRGPPHQGDVPQRILSLNLCTDQLLLALADRRQIVG CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHEEE LTHNARDPGLSAVPTLARGLPQHHGSAEQLLAANPDLVVGMPARGSAALAALPDARYPLL ECCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCEEEECCCCCCCEEEECCCCCCCEE DVVPANHLDDIYRAIRQTAAAVGHPERGDALIADMQGDLAALPRPGRGRVAAYYQRRGYM ECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHCCCCCCCCEEHHHHHCCCC TGTGTLVDDLMTRAGLVNLAARLGRPPLAQVSLEEMVAADPDFLIVESATDAVTDQGSEM CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHCCCHHH LHHPALDHIPRISVPQAWTVCGGPAYARAAQSIAAQIVRHDGGGA HHCCHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA