Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486492

Identifier: 103486492

GI number: 103486492

Start: 1026074

End: 1026931

Strand: Reverse

Name: 103486492

Synonym: Sala_1003

Alternate gene names: NA

Gene position: 1026931-1026074 (Counterclockwise)

Preceding gene: 103486493

Following gene: 103486491

Centisome position: 30.7

GC content: 72.38

Gene sequence:

>858_bases
ATGGCGATCAGGCCCGCGCTGATCGGCGCGGCGCTGATCGGCGCCGCGGGGGTGCTGGCGGCGGCGCCCGCCGATCGCGG
CCCCCCGCATCAAGGCGACGTGCCGCAGCGCATCCTGTCGCTGAATCTCTGCACCGACCAGCTGCTGCTCGCGCTTGCCG
ACCGCCGCCAGATCGTCGGGCTGACGCACAATGCGCGCGATCCCGGCCTGTCGGCGGTGCCCACGCTTGCGCGCGGGCTG
CCGCAGCACCACGGTTCGGCCGAACAGCTGCTCGCGGCGAACCCCGACCTGGTGGTCGGAATGCCCGCGCGCGGCAGCGC
TGCCCTCGCGGCGCTGCCCGATGCGCGCTATCCCCTGCTCGACGTGGTGCCCGCCAACCATCTCGACGACATCTATCGCG
CGATCCGCCAGACCGCCGCCGCGGTCGGTCATCCCGAACGCGGCGACGCGCTGATCGCCGACATGCAGGGCGATCTCGCC
GCGCTGCCGCGTCCCGGCCGCGGGCGTGTCGCGGCCTATTACCAGCGCCGCGGCTATATGACCGGCACCGGCACGCTGGT
CGATGATCTGATGACGCGCGCGGGCCTCGTCAATCTGGCGGCCAGGCTCGGCAGGCCCCCGCTCGCGCAGGTCAGCCTGG
AGGAGATGGTCGCCGCCGATCCCGATTTCCTGATCGTCGAAAGCGCGACCGATGCCGTGACCGATCAGGGCAGCGAAATG
CTGCATCATCCGGCGCTCGACCATATTCCGCGCATTTCGGTCCCGCAGGCGTGGACGGTGTGCGGCGGCCCCGCCTATGC
GCGCGCCGCGCAGAGCATCGCCGCGCAGATCGTCCGGCACGACGGCGGCGGCGCATGA

Upstream 100 bases:

>100_bases
GTTCAACTTTGGCACCTATGGCCGCGCCGCCCATGGCGGGGTGCGGGCGCGATTCTGATGGCGCGGCGGGGGAGATGGGT
ATGAGCGGGATAGCGAGGTG

Downstream 100 bases:

>100_bases
GCCGCGTCGCCCCGCCACGCTGGTCGCTGATGACCGGGCTTCTCGCGCTCACCCTCGCCGCGGCCCTGGCCTCGCTGCTC
TTCGGCCCGGTCGCGCTGTC

Product: periplasmic binding protein

Products: NA

Alternate protein names: Fe3+-Hydroxamate ABC Transporter Periplasmic Protein; ABC-Type Transport System Periplasmic Component; Fe ABC Transporter; ABC Transporter Periplasmic Protein

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MAIRPALIGAALIGAAGVLAAAPADRGPPHQGDVPQRILSLNLCTDQLLLALADRRQIVGLTHNARDPGLSAVPTLARGL
PQHHGSAEQLLAANPDLVVGMPARGSAALAALPDARYPLLDVVPANHLDDIYRAIRQTAAAVGHPERGDALIADMQGDLA
ALPRPGRGRVAAYYQRRGYMTGTGTLVDDLMTRAGLVNLAARLGRPPLAQVSLEEMVAADPDFLIVESATDAVTDQGSEM
LHHPALDHIPRISVPQAWTVCGGPAYARAAQSIAAQIVRHDGGGA

Sequences:

>Translated_285_residues
MAIRPALIGAALIGAAGVLAAAPADRGPPHQGDVPQRILSLNLCTDQLLLALADRRQIVGLTHNARDPGLSAVPTLARGL
PQHHGSAEQLLAANPDLVVGMPARGSAALAALPDARYPLLDVVPANHLDDIYRAIRQTAAAVGHPERGDALIADMQGDLA
ALPRPGRGRVAAYYQRRGYMTGTGTLVDDLMTRAGLVNLAARLGRPPLAQVSLEEMVAADPDFLIVESATDAVTDQGSEM
LHHPALDHIPRISVPQAWTVCGGPAYARAAQSIAAQIVRHDGGGA
>Mature_284_residues
AIRPALIGAALIGAAGVLAAAPADRGPPHQGDVPQRILSLNLCTDQLLLALADRRQIVGLTHNARDPGLSAVPTLARGLP
QHHGSAEQLLAANPDLVVGMPARGSAALAALPDARYPLLDVVPANHLDDIYRAIRQTAAAVGHPERGDALIADMQGDLAA
LPRPGRGRVAAYYQRRGYMTGTGTLVDDLMTRAGLVNLAARLGRPPLAQVSLEEMVAADPDFLIVESATDAVTDQGSEML
HHPALDHIPRISVPQAWTVCGGPAYARAAQSIAAQIVRHDGGGA

Specific function: Unknown

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29656; Mature: 29525

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIRPALIGAALIGAAGVLAAAPADRGPPHQGDVPQRILSLNLCTDQLLLALADRRQIVG
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHEEE
LTHNARDPGLSAVPTLARGLPQHHGSAEQLLAANPDLVVGMPARGSAALAALPDARYPLL
ECCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCEEEECCCCCCCEEEECCCCCCCEE
DVVPANHLDDIYRAIRQTAAAVGHPERGDALIADMQGDLAALPRPGRGRVAAYYQRRGYM
ECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHCCCCCCCCEEHHHHHCCCC
TGTGTLVDDLMTRAGLVNLAARLGRPPLAQVSLEEMVAADPDFLIVESATDAVTDQGSEM
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHCCCHHH
LHHPALDHIPRISVPQAWTVCGGPAYARAAQSIAAQIVRHDGGGA
HHCCHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AIRPALIGAALIGAAGVLAAAPADRGPPHQGDVPQRILSLNLCTDQLLLALADRRQIVG
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHEEE
LTHNARDPGLSAVPTLARGLPQHHGSAEQLLAANPDLVVGMPARGSAALAALPDARYPLL
ECCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCEEEECCCCCCCEEEECCCCCCCEE
DVVPANHLDDIYRAIRQTAAAVGHPERGDALIADMQGDLAALPRPGRGRVAAYYQRRGYM
ECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHCCCCCCCCEEHHHHHCCCC
TGTGTLVDDLMTRAGLVNLAARLGRPPLAQVSLEEMVAADPDFLIVESATDAVTDQGSEM
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHCCCHHH
LHHPALDHIPRISVPQAWTVCGGPAYARAAQSIAAQIVRHDGGGA
HHCCHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA