| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103486484
Identifier: 103486484
GI number: 103486484
Start: 1019446
End: 1019937
Strand: Direct
Name: 103486484
Synonym: Sala_0995
Alternate gene names: NA
Gene position: 1019446-1019937 (Clockwise)
Preceding gene: 103486483
Following gene: 103486489
Centisome position: 30.48
GC content: 63.62
Gene sequence:
>492_bases TTGCCCCACGCGACCGCTGGCCATTGGGGTAGCGGCGAACCGCACAATCATTACAGGAGCGCCGCGATGACCGGACTTCC GCCCTTTCACATCGCTTTTCCCGTGCATGACCTCGACGCTGCGCGCGCTTTCTATGGTGGCATACTCGGCTGCCCCGAAG GACGCAGCGACGCCGACTGGATCGACTTCGACCTTTATGGCCACCAGATCGTCGCGCACCGTGTCGACACAAGGCCCGAC GCCATAGCGGGCCACAATCCGGTCGATGGCCATGCGGTTCCCGTCCCGCACTTCGGCGTGGTGCTGCCGCCTGCGGAATG GCGCGCGCTTGCCGACCGACTGCGGAACGCCGGGGTGGCCTTTGTGATCGAACCCCATACGCGCTTCGCCGGCGAAGCAG GCGAACAATCGACGATGTTTTTCCACGATCCGTCGGGCAATGCGCTCGAGTTCAAGGCCTTTGCCGATCTCGGTCAATTG TTCGCGACCTAG
Upstream 100 bases:
>100_bases GCGGCGATCATGGCCGCGCTCGCGATCTGGGGCAGCATCGAGGTGTTCCGACAGGCGCAGAACGACCTTGCCGCCGCGGC GACGTGATGCGGAGCGCGCC
Downstream 100 bases:
>100_bases AGCGCGATGACATGATATTGATCCACCGTGACGGAGGCGATTTTGGCCGAGTGCGAGGCGCGAGGAGCGGTGCGATGCGG GACATCGCGCCCGACGAGCA
Product: glyoxalase/bleomycin resistance protein/dioxygenase
Products: NA
Alternate protein names: Glyoxalase Family Protein; Ring-Cleaving Dioxygenase; Dioxygenase; Extradiol Dioxygenase Family Protein; Dioxygenase/Glyoxalase; Glyoxalase Domain Protein; Glyoxalase/Extradiol Ring-Cleavage Dioxygenase; Glyoxalase/Bleomycin Resistance Family Protein; Dioxygenase Of Extradiol Dioxygenase Family Protein; Glyoxalase/Bleomycin Resistance Protein; Dioxygenase Protein; Glyoxalase; Glyoxalase/Bleomycin Resistance; Extradiol Family Dioxygenase; Extradiol Dioxygenase; Lactoylglutathione Lyase Protein
Number of amino acids: Translated: 163; Mature: 162
Protein sequence:
>163_residues MPHATAGHWGSGEPHNHYRSAAMTGLPPFHIAFPVHDLDAARAFYGGILGCPEGRSDADWIDFDLYGHQIVAHRVDTRPD AIAGHNPVDGHAVPVPHFGVVLPPAEWRALADRLRNAGVAFVIEPHTRFAGEAGEQSTMFFHDPSGNALEFKAFADLGQL FAT
Sequences:
>Translated_163_residues MPHATAGHWGSGEPHNHYRSAAMTGLPPFHIAFPVHDLDAARAFYGGILGCPEGRSDADWIDFDLYGHQIVAHRVDTRPD AIAGHNPVDGHAVPVPHFGVVLPPAEWRALADRLRNAGVAFVIEPHTRFAGEAGEQSTMFFHDPSGNALEFKAFADLGQL FAT >Mature_162_residues PHATAGHWGSGEPHNHYRSAAMTGLPPFHIAFPVHDLDAARAFYGGILGCPEGRSDADWIDFDLYGHQIVAHRVDTRPDA IAGHNPVDGHAVPVPHFGVVLPPAEWRALADRLRNAGVAFVIEPHTRFAGEAGEQSTMFFHDPSGNALEFKAFADLGQLF AT
Specific function: Unknown
COG id: COG3565
COG function: function code R; Predicted dioxygenase of extradiol dioxygenase family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17651; Mature: 17520
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHATAGHWGSGEPHNHYRSAAMTGLPPFHIAFPVHDLDAARAFYGGILGCPEGRSDADW CCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCEEECCCCCCCCCE IDFDLYGHQIVAHRVDTRPDAIAGHNPVDGHAVPVPHFGVVLPPAEWRALADRLRNAGVA EEEECCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCEEECCHHHHHHHHHHHCCCEE FVIEPHTRFAGEAGEQSTMFFHDPSGNALEFKAFADLGQLFAT EEECCCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHHHCC >Mature Secondary Structure PHATAGHWGSGEPHNHYRSAAMTGLPPFHIAFPVHDLDAARAFYGGILGCPEGRSDADW CCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCEEECCCCCCCCCE IDFDLYGHQIVAHRVDTRPDAIAGHNPVDGHAVPVPHFGVVLPPAEWRALADRLRNAGVA EEEECCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCEEECCHHHHHHHHHHHCCCEE FVIEPHTRFAGEAGEQSTMFFHDPSGNALEFKAFADLGQLFAT EEECCCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA