| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486483
Identifier: 103486483
GI number: 103486483
Start: 1018809
End: 1019432
Strand: Direct
Name: 103486483
Synonym: Sala_0994
Alternate gene names: NA
Gene position: 1018809-1019432 (Clockwise)
Preceding gene: 103486481
Following gene: 103486484
Centisome position: 30.46
GC content: 68.27
Gene sequence:
>624_bases ATGGCCGATCGATGCTGTGCCGGCAAAAGCGGGCCGGCGGCACTGAACGATGCGCGCTGGCGGCGCGTGCTCTGGATCGC GCTGATCGTCAATACGGCGATGTTCGGAGTGGAAATCGCCGCGGGGGTCGCAGCGGATTCGCGCGCGCTTCAGGCCGACG CGCTCGATTTTCTTGGCGATGCCGCCAATTATGCGATCAGCCTTGGCGTGGCCGGCATGGCGCTCGCCTGGCGCGCGCGC GCCGCGCTGGTGAAGGCGGCAACGATGCTGATCTTCGGCCTGTGGGTCTTCGGCTCCGCGCTCTGGGGCTTCGTGACCGG GACGACGCCCCATGCCGAGATGATGGGGATCGTCGGCGCGCTGGCGCTCGCGGCGAATGTCGCGGTCGCGCTGATGCTCT ATCGTTATCGTGCGGGCGATGCGAACATGCGGTCGGTGTGGATATGCTCGCGCAACGACGCGATCGGCAATCTGGCCGTC ATCGGCGCGGCGCTCGGCGTGTTCGGCACCGGGAAAAGCTGGCCCGACCTCGCCGTCGCGGCGATCATGGCCGCGCTCGC GATCTGGGGCAGCATCGAGGTGTTCCGACAGGCGCAGAACGACCTTGCCGCCGCGGCGACGTGA
Upstream 100 bases:
>100_bases CCGGTGGCACGCGACAGCTCGCCGATTTTCATCGCTTGACCCTGTAGTTGATGCAGGGTGCATATGGGGTGCCGATTCGA AAGACCAAGGAGCTTTGACG
Downstream 100 bases:
>100_bases TGCGGAGCGCGCCTTGCCCCACGCGACCGCTGGCCATTGGGGTAGCGGCGAACCGCACAATCATTACAGGAGCGCCGCGA TGACCGGACTTCCGCCCTTT
Product: Co/Zn/Cd efflux system component
Products: NA
Alternate protein names: Co/Zn/Cd Efflux System Component; Cation Efflux Family Protein; Cation Efflux System Protein; Cation Efflux Permease; Cation Diffusion Facilitator Family Transporter; Cation Diffusion Facilitator; Co/Zn/Cd Efflux System Membrane Component; Cation Efflux Protein ; CDF Family Heavy Metal/H(+) Antiporter; Co/Zn/Cd Efflux Protein; RND Efflux System Protein; Co/Zn/Cd Efflux System Protein; CDF Family Cobalt/Cadmium/Zinc Transporter
Number of amino acids: Translated: 207; Mature: 206
Protein sequence:
>207_residues MADRCCAGKSGPAALNDARWRRVLWIALIVNTAMFGVEIAAGVAADSRALQADALDFLGDAANYAISLGVAGMALAWRAR AALVKAATMLIFGLWVFGSALWGFVTGTTPHAEMMGIVGALALAANVAVALMLYRYRAGDANMRSVWICSRNDAIGNLAV IGAALGVFGTGKSWPDLAVAAIMAALAIWGSIEVFRQAQNDLAAAAT
Sequences:
>Translated_207_residues MADRCCAGKSGPAALNDARWRRVLWIALIVNTAMFGVEIAAGVAADSRALQADALDFLGDAANYAISLGVAGMALAWRAR AALVKAATMLIFGLWVFGSALWGFVTGTTPHAEMMGIVGALALAANVAVALMLYRYRAGDANMRSVWICSRNDAIGNLAV IGAALGVFGTGKSWPDLAVAAIMAALAIWGSIEVFRQAQNDLAAAAT >Mature_206_residues ADRCCAGKSGPAALNDARWRRVLWIALIVNTAMFGVEIAAGVAADSRALQADALDFLGDAANYAISLGVAGMALAWRARA ALVKAATMLIFGLWVFGSALWGFVTGTTPHAEMMGIVGALALAANVAVALMLYRYRAGDANMRSVWICSRNDAIGNLAVI GAALGVFGTGKSWPDLAVAAIMAALAIWGSIEVFRQAQNDLAAAAT
Specific function: Unknown
COG id: COG1230
COG function: function code P; Co/Zn/Cd efflux system component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21460; Mature: 21329
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADRCCAGKSGPAALNDARWRRVLWIALIVNTAMFGVEIAAGVAADSRALQADALDFLGD CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH AANYAISLGVAGMALAWRARAALVKAATMLIFGLWVFGSALWGFVTGTTPHAEMMGIVGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH LALAANVAVALMLYRYRAGDANMRSVWICSRNDAIGNLAVIGAALGVFGTGKSWPDLAVA HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHH AIMAALAIWGSIEVFRQAQNDLAAAAT HHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ADRCCAGKSGPAALNDARWRRVLWIALIVNTAMFGVEIAAGVAADSRALQADALDFLGD CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH AANYAISLGVAGMALAWRARAALVKAATMLIFGLWVFGSALWGFVTGTTPHAEMMGIVGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH LALAANVAVALMLYRYRAGDANMRSVWICSRNDAIGNLAVIGAALGVFGTGKSWPDLAVA HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHH AIMAALAIWGSIEVFRQAQNDLAAAAT HHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA