Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486483

Identifier: 103486483

GI number: 103486483

Start: 1018809

End: 1019432

Strand: Direct

Name: 103486483

Synonym: Sala_0994

Alternate gene names: NA

Gene position: 1018809-1019432 (Clockwise)

Preceding gene: 103486481

Following gene: 103486484

Centisome position: 30.46

GC content: 68.27

Gene sequence:

>624_bases
ATGGCCGATCGATGCTGTGCCGGCAAAAGCGGGCCGGCGGCACTGAACGATGCGCGCTGGCGGCGCGTGCTCTGGATCGC
GCTGATCGTCAATACGGCGATGTTCGGAGTGGAAATCGCCGCGGGGGTCGCAGCGGATTCGCGCGCGCTTCAGGCCGACG
CGCTCGATTTTCTTGGCGATGCCGCCAATTATGCGATCAGCCTTGGCGTGGCCGGCATGGCGCTCGCCTGGCGCGCGCGC
GCCGCGCTGGTGAAGGCGGCAACGATGCTGATCTTCGGCCTGTGGGTCTTCGGCTCCGCGCTCTGGGGCTTCGTGACCGG
GACGACGCCCCATGCCGAGATGATGGGGATCGTCGGCGCGCTGGCGCTCGCGGCGAATGTCGCGGTCGCGCTGATGCTCT
ATCGTTATCGTGCGGGCGATGCGAACATGCGGTCGGTGTGGATATGCTCGCGCAACGACGCGATCGGCAATCTGGCCGTC
ATCGGCGCGGCGCTCGGCGTGTTCGGCACCGGGAAAAGCTGGCCCGACCTCGCCGTCGCGGCGATCATGGCCGCGCTCGC
GATCTGGGGCAGCATCGAGGTGTTCCGACAGGCGCAGAACGACCTTGCCGCCGCGGCGACGTGA

Upstream 100 bases:

>100_bases
CCGGTGGCACGCGACAGCTCGCCGATTTTCATCGCTTGACCCTGTAGTTGATGCAGGGTGCATATGGGGTGCCGATTCGA
AAGACCAAGGAGCTTTGACG

Downstream 100 bases:

>100_bases
TGCGGAGCGCGCCTTGCCCCACGCGACCGCTGGCCATTGGGGTAGCGGCGAACCGCACAATCATTACAGGAGCGCCGCGA
TGACCGGACTTCCGCCCTTT

Product: Co/Zn/Cd efflux system component

Products: NA

Alternate protein names: Co/Zn/Cd Efflux System Component; Cation Efflux Family Protein; Cation Efflux System Protein; Cation Efflux Permease; Cation Diffusion Facilitator Family Transporter; Cation Diffusion Facilitator; Co/Zn/Cd Efflux System Membrane Component; Cation Efflux Protein ; CDF Family Heavy Metal/H(+) Antiporter; Co/Zn/Cd Efflux Protein; RND Efflux System Protein; Co/Zn/Cd Efflux System Protein; CDF Family Cobalt/Cadmium/Zinc Transporter

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MADRCCAGKSGPAALNDARWRRVLWIALIVNTAMFGVEIAAGVAADSRALQADALDFLGDAANYAISLGVAGMALAWRAR
AALVKAATMLIFGLWVFGSALWGFVTGTTPHAEMMGIVGALALAANVAVALMLYRYRAGDANMRSVWICSRNDAIGNLAV
IGAALGVFGTGKSWPDLAVAAIMAALAIWGSIEVFRQAQNDLAAAAT

Sequences:

>Translated_207_residues
MADRCCAGKSGPAALNDARWRRVLWIALIVNTAMFGVEIAAGVAADSRALQADALDFLGDAANYAISLGVAGMALAWRAR
AALVKAATMLIFGLWVFGSALWGFVTGTTPHAEMMGIVGALALAANVAVALMLYRYRAGDANMRSVWICSRNDAIGNLAV
IGAALGVFGTGKSWPDLAVAAIMAALAIWGSIEVFRQAQNDLAAAAT
>Mature_206_residues
ADRCCAGKSGPAALNDARWRRVLWIALIVNTAMFGVEIAAGVAADSRALQADALDFLGDAANYAISLGVAGMALAWRARA
ALVKAATMLIFGLWVFGSALWGFVTGTTPHAEMMGIVGALALAANVAVALMLYRYRAGDANMRSVWICSRNDAIGNLAVI
GAALGVFGTGKSWPDLAVAAIMAALAIWGSIEVFRQAQNDLAAAAT

Specific function: Unknown

COG id: COG1230

COG function: function code P; Co/Zn/Cd efflux system component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21460; Mature: 21329

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADRCCAGKSGPAALNDARWRRVLWIALIVNTAMFGVEIAAGVAADSRALQADALDFLGD
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
AANYAISLGVAGMALAWRARAALVKAATMLIFGLWVFGSALWGFVTGTTPHAEMMGIVGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LALAANVAVALMLYRYRAGDANMRSVWICSRNDAIGNLAVIGAALGVFGTGKSWPDLAVA
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHH
AIMAALAIWGSIEVFRQAQNDLAAAAT
HHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ADRCCAGKSGPAALNDARWRRVLWIALIVNTAMFGVEIAAGVAADSRALQADALDFLGD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
AANYAISLGVAGMALAWRARAALVKAATMLIFGLWVFGSALWGFVTGTTPHAEMMGIVGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LALAANVAVALMLYRYRAGDANMRSVWICSRNDAIGNLAVIGAALGVFGTGKSWPDLAVA
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHH
AIMAALAIWGSIEVFRQAQNDLAAAAT
HHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA