Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is yjqA [H]

Identifier: 103486461

GI number: 103486461

Start: 997463

End: 997828

Strand: Direct

Name: yjqA [H]

Synonym: Sala_0972

Alternate gene names: 103486461

Gene position: 997463-997828 (Clockwise)

Preceding gene: 103486460

Following gene: 103486462

Centisome position: 29.82

GC content: 62.57

Gene sequence:

>366_bases
ATGGGCCTGTTCAGCGCCGGGGACCTCGACGTTTCGCGCGCGCAGGCCGAGTTTCAGCCATGGCTGATCGACGGCGAACA
GGTGCTCGCGGCGTTCCGCACGATTCGCGACACGGTGCTGCTCACCAGCCATCGCTTCGTCTTCGTCGACGTACAGGGGA
TGACGGGATCGAAAAAGGATTTCCAAAGCATTCCCTGGCGTTCGGTGACGCGCTTTTCGTTCGAGACCGCGGGCACCTTT
GACCTCGATGCCGACATGAAAGTCTGGGTTTCGGGTGCCGCGACGCCGCTCGAGGTCAAGATTTCGCGCAAGAGCGACCC
GCAGCGCATCCACCAGCTGATGGCGCGCCTGATCGTTAGCCGCTGA

Upstream 100 bases:

>100_bases
GGAGCAGGGCAAGCCCGTGCTCGACGAGGAAATCGGCAACGCCGTGCGGCTGACGCAGGGCGGCAAGGTCGTCAACGAGC
GGCTGCTGGGGTAATCGGAT

Downstream 100 bases:

>100_bases
CGATAATGAAAAAATGGCCGATTTGGGCCTTTTATTGATCGCGCGGCGGGTTACTATGGGACCTCAACCCCCGTCCTTGA
ACAACCGGAGATTACCCGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 120

Protein sequence:

>121_residues
MGLFSAGDLDVSRAQAEFQPWLIDGEQVLAAFRTIRDTVLLTSHRFVFVDVQGMTGSKKDFQSIPWRSVTRFSFETAGTF
DLDADMKVWVSGAATPLEVKISRKSDPQRIHQLMARLIVSR

Sequences:

>Translated_121_residues
MGLFSAGDLDVSRAQAEFQPWLIDGEQVLAAFRTIRDTVLLTSHRFVFVDVQGMTGSKKDFQSIPWRSVTRFSFETAGTF
DLDADMKVWVSGAATPLEVKISRKSDPQRIHQLMARLIVSR
>Mature_120_residues
GLFSAGDLDVSRAQAEFQPWLIDGEQVLAAFRTIRDTVLLTSHRFVFVDVQGMTGSKKDFQSIPWRSVTRFSFETAGTFD
LDADMKVWVSGAATPLEVKISRKSDPQRIHQLMARLIVSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012544 [H]

Pfam domain/function: PF08000 DUF1696 [H]

EC number: NA

Molecular weight: Translated: 13634; Mature: 13503

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLFSAGDLDVSRAQAEFQPWLIDGEQVLAAFRTIRDTVLLTSHRFVFVDVQGMTGSKKD
CCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHHHHEEEECCCEEEEEEECCCCCCCH
FQSIPWRSVTRFSFETAGTFDLDADMKVWVSGAATPLEVKISRKSDPQRIHQLMARLIVS
HHCCCCCCEEEEECCCCCCEECCCCCEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHC
R
C
>Mature Secondary Structure 
GLFSAGDLDVSRAQAEFQPWLIDGEQVLAAFRTIRDTVLLTSHRFVFVDVQGMTGSKKD
CCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHHHHEEEECCCEEEEEEECCCCCCCH
FQSIPWRSVTRFSFETAGTFDLDADMKVWVSGAATPLEVKISRKSDPQRIHQLMARLIVS
HHCCCCCCEEEEECCCCCCEECCCCCEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]