Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486441

Identifier: 103486441

GI number: 103486441

Start: 975503

End: 977344

Strand: Direct

Name: 103486441

Synonym: Sala_0951

Alternate gene names: NA

Gene position: 975503-977344 (Clockwise)

Preceding gene: 103486440

Following gene: 103486444

Centisome position: 29.16

GC content: 73.62

Gene sequence:

>1842_bases
ATGGGCTTTCGCCGCGTCTGGACGGGCGCGCTGCTGATCGCGGCGTCGCTTTCGGCGTGCGGCGGCGCGTCCGACACGCC
GCGCGGCGAGATGGAGGCGCGCCGTGCCGCTTTGCAGCAGGCCATAGCCGACGATCCCGGGGCGATCGCCGAGCGCGTCG
CTCTCGCGCGGGTGGCGATCGCGCTCGGCGATGGCGTCGGCGCCGAAGCGGCGGTGAAGGGGGCGATCGAGGCGGGGGCG
AATGATGCGGCGTTGCGCCCACTGCTCGCGCGCGCCTTTGAATTGCAGGGCGACGGCGCGCGGGCGCTGGCCGCACTCGA
GGCCGGGCCGGTCATCCCCGAAATGCTGGGCGAGGCGGCGTGGGTCGCGGGCGACGTTCACCTTGCGAACGGCGATCTGG
CGGCGGCGCGCGAGGCCTATGACCGCGCGGTGCACGAGCTGCCGCGCAGCTCCGCGCTGTGGGTCGATGTCGCGCGCTTT
CGCGACGCCAGCGCCGATATGCGCGGCGCGCGCGACGCGGTCGATTATGCGATTGAACTCGACGCGGCGAACAGCGCGGC
GCTGGCGTATAAGGCCAATCTGGTGCGGAGGGCCGAAGGGCTAACCGCGGCGCTGGCGTGGTACGACCGGGCGCTTGCCG
CCGATCCGGGCAATGCCGCGGCGCTGATCGATCAGGCGGCGACGCTCGGCGATCTTGGCCGCTACCGCGACATGCTGACG
GCGCTGCGCCGTGCGGCGGTGCTCGTCCCGCGCGAGCCGCGGATCCATTATCTGCAAGCCGTGCTGGCGGCACGCGCGGC
GAATTACCGGCTCGCGCGCAGTCTGCTCCAGCGCACGCGCGGCGCGCTCGATTCCGAGCCGGGGTTCATGCTGCTGAGCG
CGGTGGTCGAGCTGGAGCTGGGCGGCGAGGCGGTGGCGGCGAGCTGGGCCGAGCGACTGCTTGCCGAACAGCCGCATAAT
TTCGCCGCACGGCGCCTGCTGGCGGCGGCCGAATGGGCGGGCGGCGATGCCGAGGCGGCGCTCGCGGCGCTGCGTCCGCT
CGTCGCGCGGCCCGACGCCGACAGCTGGTCGCTGCTGCTCGCCGCGCGCGCGGCGGCCGAACAGGGACGCGATATCGAAT
CGGCCGGCTATCAGGCGCGCGCCGCGACGCTGGACCGCGGCGAGGCGGTGCCCTTTGCCGTCGATGCCGATTATGGCCTG
CTGACGATGGCCGCCGACGCCGCGCCGCTCGATCCGGCGACCGTGATCCCGGCGATTTCGGCGGATATGGCGCGCGGCAA
CACGGCGCGCGCGATCGAGCGCGCGGTCCGGCTGCGCGATGCCAATCCGGGAGTCGCCGACGCGCATATGCTGCTCGGCG
ACGCGGCGCTCGCGGGCGGGCGCTACGCGCTGGCGGTCGAGGCCTATCGCGCCGCCCGCAACCTCGACGCGGGGGAGCGC
ACGACGTTGCGGCTCGCGAATGCGCTCTATCGCGCCGGCGACGCGGCGGGGTCGGGCGCGGCGATCATGGCGTTACGCGA
CCGTCAGCCGTCGAGCGTCGCCGCCGATCGGATCGCGGGCCATCTGGCGATCGAGCTTGGGCACTGGGACGCGGCGATCG
CGCATTTCGAGCGCGTGGGCAGCCGGATCGGCGATCGCGACGCCGTGGTGCTGCGCGAACTCGCACGCGCGTGGGCGGCA
AAGGGCGACGATGCGCGCGCGCTGGTGCTGATCGACCGCGCCTATCGGTTGCAGCCGCTGAACGCGGGCATCATGGAATT
ATACGCGGCGCTGCTGGAGCGGCGCGGGAAGCGCCAGGCGGCGGCGGATTTGCGCGACAAGGCGGCGCAGATCGGGCGGT
AG

Upstream 100 bases:

>100_bases
GACACAGAGCGAGGGCAATATCTCGCACGCGGCCAAGCTGCTGGGGATCAGTCGCCCGACGCTTTACGACCTGCTCAAAC
AATATCGGATGCAGGGCTGA

Downstream 100 bases:

>100_bases
GGGGGGCGGGGTTAAGGGTCGGTAGCGGCCTCTCTCTTACCGTCATCCCGGCGAAGGCCGGGATCTCGCCGGTGCGGTAA
ACTGATAGGGTGAGATCCCG

Product: tetratricopeptide TPR_2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 613; Mature: 612

Protein sequence:

>613_residues
MGFRRVWTGALLIAASLSACGGASDTPRGEMEARRAALQQAIADDPGAIAERVALARVAIALGDGVGAEAAVKGAIEAGA
NDAALRPLLARAFELQGDGARALAALEAGPVIPEMLGEAAWVAGDVHLANGDLAAAREAYDRAVHELPRSSALWVDVARF
RDASADMRGARDAVDYAIELDAANSAALAYKANLVRRAEGLTAALAWYDRALAADPGNAAALIDQAATLGDLGRYRDMLT
ALRRAAVLVPREPRIHYLQAVLAARAANYRLARSLLQRTRGALDSEPGFMLLSAVVELELGGEAVAASWAERLLAEQPHN
FAARRLLAAAEWAGGDAEAALAALRPLVARPDADSWSLLLAARAAAEQGRDIESAGYQARAATLDRGEAVPFAVDADYGL
LTMAADAAPLDPATVIPAISADMARGNTARAIERAVRLRDANPGVADAHMLLGDAALAGGRYALAVEAYRAARNLDAGER
TTLRLANALYRAGDAAGSGAAIMALRDRQPSSVAADRIAGHLAIELGHWDAAIAHFERVGSRIGDRDAVVLRELARAWAA
KGDDARALVLIDRAYRLQPLNAGIMELYAALLERRGKRQAAADLRDKAAQIGR

Sequences:

>Translated_613_residues
MGFRRVWTGALLIAASLSACGGASDTPRGEMEARRAALQQAIADDPGAIAERVALARVAIALGDGVGAEAAVKGAIEAGA
NDAALRPLLARAFELQGDGARALAALEAGPVIPEMLGEAAWVAGDVHLANGDLAAAREAYDRAVHELPRSSALWVDVARF
RDASADMRGARDAVDYAIELDAANSAALAYKANLVRRAEGLTAALAWYDRALAADPGNAAALIDQAATLGDLGRYRDMLT
ALRRAAVLVPREPRIHYLQAVLAARAANYRLARSLLQRTRGALDSEPGFMLLSAVVELELGGEAVAASWAERLLAEQPHN
FAARRLLAAAEWAGGDAEAALAALRPLVARPDADSWSLLLAARAAAEQGRDIESAGYQARAATLDRGEAVPFAVDADYGL
LTMAADAAPLDPATVIPAISADMARGNTARAIERAVRLRDANPGVADAHMLLGDAALAGGRYALAVEAYRAARNLDAGER
TTLRLANALYRAGDAAGSGAAIMALRDRQPSSVAADRIAGHLAIELGHWDAAIAHFERVGSRIGDRDAVVLRELARAWAA
KGDDARALVLIDRAYRLQPLNAGIMELYAALLERRGKRQAAADLRDKAAQIGR
>Mature_612_residues
GFRRVWTGALLIAASLSACGGASDTPRGEMEARRAALQQAIADDPGAIAERVALARVAIALGDGVGAEAAVKGAIEAGAN
DAALRPLLARAFELQGDGARALAALEAGPVIPEMLGEAAWVAGDVHLANGDLAAAREAYDRAVHELPRSSALWVDVARFR
DASADMRGARDAVDYAIELDAANSAALAYKANLVRRAEGLTAALAWYDRALAADPGNAAALIDQAATLGDLGRYRDMLTA
LRRAAVLVPREPRIHYLQAVLAARAANYRLARSLLQRTRGALDSEPGFMLLSAVVELELGGEAVAASWAERLLAEQPHNF
AARRLLAAAEWAGGDAEAALAALRPLVARPDADSWSLLLAARAAAEQGRDIESAGYQARAATLDRGEAVPFAVDADYGLL
TMAADAAPLDPATVIPAISADMARGNTARAIERAVRLRDANPGVADAHMLLGDAALAGGRYALAVEAYRAARNLDAGERT
TLRLANALYRAGDAAGSGAAIMALRDRQPSSVAADRIAGHLAIELGHWDAAIAHFERVGSRIGDRDAVVLRELARAWAAK
GDDARALVLIDRAYRLQPLNAGIMELYAALLERRGKRQAAADLRDKAAQIGR

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 64262; Mature: 64131

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFRRVWTGALLIAASLSACGGASDTPRGEMEARRAALQQAIADDPGAIAERVALARVAI
CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ALGDGVGAEAAVKGAIEAGANDAALRPLLARAFELQGDGARALAALEAGPVIPEMLGEAA
HHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHCCHH
WVAGDVHLANGDLAAAREAYDRAVHELPRSSALWVDVARFRDASADMRGARDAVDYAIEL
EEECCEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEHHHHCCCCCHHCCCHHHHCEEEEE
DAANSAALAYKANLVRRAEGLTAALAWYDRALAADPGNAAALIDQAATLGDLGRYRDMLT
CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ALRRAAVLVPREPRIHYLQAVLAARAANYRLARSLLQRTRGALDSEPGFMLLSAVVELEL
HHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
GGEAVAASWAERLLAEQPHNFAARRLLAAAEWAGGDAEAALAALRPLVARPDADSWSLLL
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHH
AARAAAEQGRDIESAGYQARAATLDRGEAVPFAVDADYGLLTMAADAAPLDPATVIPAIS
HHHHHHHCCCCCHHCCCCHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCHHHHHHHH
ADMARGNTARAIERAVRLRDANPGVADAHMLLGDAALAGGRYALAVEAYRAARNLDAGER
HHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCH
TTLRLANALYRAGDAAGSGAAIMALRDRQPSSVAADRIAGHLAIELGHWDAAIAHFERVG
HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHCEEEEEECCHHHHHHHHHHHH
SRIGDRDAVVLRELARAWAAKGDDARALVLIDRAYRLQPLNAGIMELYAALLERRGKRQA
HHCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCHHCCCCCCCHHHHHHHHHHHCCCHHH
AADLRDKAAQIGR
HHHHHHHHHHCCC
>Mature Secondary Structure 
GFRRVWTGALLIAASLSACGGASDTPRGEMEARRAALQQAIADDPGAIAERVALARVAI
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ALGDGVGAEAAVKGAIEAGANDAALRPLLARAFELQGDGARALAALEAGPVIPEMLGEAA
HHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHCCHH
WVAGDVHLANGDLAAAREAYDRAVHELPRSSALWVDVARFRDASADMRGARDAVDYAIEL
EEECCEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEHHHHCCCCCHHCCCHHHHCEEEEE
DAANSAALAYKANLVRRAEGLTAALAWYDRALAADPGNAAALIDQAATLGDLGRYRDMLT
CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ALRRAAVLVPREPRIHYLQAVLAARAANYRLARSLLQRTRGALDSEPGFMLLSAVVELEL
HHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
GGEAVAASWAERLLAEQPHNFAARRLLAAAEWAGGDAEAALAALRPLVARPDADSWSLLL
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHH
AARAAAEQGRDIESAGYQARAATLDRGEAVPFAVDADYGLLTMAADAAPLDPATVIPAIS
HHHHHHHCCCCCHHCCCCHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCHHHHHHHH
ADMARGNTARAIERAVRLRDANPGVADAHMLLGDAALAGGRYALAVEAYRAARNLDAGER
HHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCH
TTLRLANALYRAGDAAGSGAAIMALRDRQPSSVAADRIAGHLAIELGHWDAAIAHFERVG
HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHCEEEEEECCHHHHHHHHHHHH
SRIGDRDAVVLRELARAWAAKGDDARALVLIDRAYRLQPLNAGIMELYAALLERRGKRQA
HHCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCHHCCCCCCCHHHHHHHHHHHCCCHHH
AADLRDKAAQIGR
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA