| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486425
Identifier: 103486425
GI number: 103486425
Start: 953089
End: 954375
Strand: Reverse
Name: 103486425
Synonym: Sala_0935
Alternate gene names: NA
Gene position: 954375-953089 (Counterclockwise)
Preceding gene: 103486426
Following gene: 103486423
Centisome position: 28.53
GC content: 66.98
Gene sequence:
>1287_bases GTGCAACGCTTTCGACAGCGCCATCTGAGCGCTGCGCTCGCGACAAGTCTTTTGGCGGCATCGCCGACGTCGGCCGAAAA TCTCTATATCGAGGCCGGACGGCTGATCGATGGCGTCTCCAGCGAGGTCCGTACCGGCCAGTGCATCACCGTCGAGGCCG AACGCATCAAGGCGGTGGCTCCATGCGGGCCGACGCCCGATGGCGCGAAGCGGCTCGACTGGTCCGCCTTCACCGTCCTG CCCGGCCTGATCGACCTCCACACGCACCTAGCCGACCTCGGCCAGAGCGCCGACCTCGCCGCGCCGATCAAGGCGTCGCC CGCCGAAACCGCGCTCGTCGGCGCGCGCAACGCACGCGTGACGCTGGAAGCCGGATTTACCAGCGTGCGCGATGTCGGCA CCTATCGCGGACTCACCGACGTCGCCTTGCGCAACGCGATCGACCGCGGCGACGTGCCGGGGCCGCGCATGTGGGTCGCG GGCGCCTATATCACCATCCCAAAGGGCGGCGGCGAGCTCAACGGCGTCATCCCCAATGAGCAGCTACCGCCCGACATGCG GCTGGGCGTCGCCGTGACGTCCGAGGAAGCGGCGGAAAAAGCGGCCTTCCTTCTCGATCAAGGCGCCGATTTCATCAAGA CGATCGCCACCGGCGCGGTGCTCGCGATCGGCACCGAACCCGGCGCGCCCGAACTCACCGAGGATCAGTTGCGGGCGGTC GTCAGGGTCGCCCACGCCCGCGGCAAGCGGGTCACCGCGCACGCCCACGGCGCCGAAGGGATCAAGACCGCTATTCGCGC CGGGGTCGACAGCATCGAACACGCCAGCGTCGCCGACGAGGAAGCGCTGCAACTCGCAAAAAAGCACGGCACCTGGCTCG CGATGGATATCTACAACGGCGACTATATCGACGAAATCGGGACGAAGGAGGGCTGGCCCGCCGAATATCTGCGCAAGAAC CGCGAGACGACCGACGCCCAGCGCGCCGCCTTTCGCCGCGCGGTCGAGCTGGGGGTCAACATCGGCTATGCCACCGACGC CGGCGTCTATCCGCACGGACTGAATGCGCGGCAATTCCGCAATATGGTTCAATATGGGATGACGCCGATGCAGGCGATTC AGTCGGCGACGGGCCACGCCGCCGAAGAAATGGGCCGCAGCGACATCGGCGCGATCGTCCCCGGCCGCTATGCCGATTTC GTCGCGGTAAAGGCCGACCCGCTCGCCGACATCACGGCGCTCGAGGCGATCGATCATGTTATGAAGGGCGGTGTGCTGGT ACGCTAG
Upstream 100 bases:
>100_bases CGGCGGGACAGCGTCCGGTGCCCGAAAGCTTTACCCACGGGACGAGCGAGCAACGCATGACCTGGCTGCGCCGCGGCCTG CAAACGGGGGATCCGCGCCA
Downstream 100 bases:
>100_bases GATCAGCGTGCAGCGTCGCGTGGCCCCCGTTCCTTGCCTAATATTCGACGATGATGCGGACCCGGTCGATGCCAAGCCCC GCGGCACGGGCGATCTGTTC
Product: amidohydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 428; Mature: 428
Protein sequence:
>428_residues MQRFRQRHLSAALATSLLAASPTSAENLYIEAGRLIDGVSSEVRTGQCITVEAERIKAVAPCGPTPDGAKRLDWSAFTVL PGLIDLHTHLADLGQSADLAAPIKASPAETALVGARNARVTLEAGFTSVRDVGTYRGLTDVALRNAIDRGDVPGPRMWVA GAYITIPKGGGELNGVIPNEQLPPDMRLGVAVTSEEAAEKAAFLLDQGADFIKTIATGAVLAIGTEPGAPELTEDQLRAV VRVAHARGKRVTAHAHGAEGIKTAIRAGVDSIEHASVADEEALQLAKKHGTWLAMDIYNGDYIDEIGTKEGWPAEYLRKN RETTDAQRAAFRRAVELGVNIGYATDAGVYPHGLNARQFRNMVQYGMTPMQAIQSATGHAAEEMGRSDIGAIVPGRYADF VAVKADPLADITALEAIDHVMKGGVLVR
Sequences:
>Translated_428_residues MQRFRQRHLSAALATSLLAASPTSAENLYIEAGRLIDGVSSEVRTGQCITVEAERIKAVAPCGPTPDGAKRLDWSAFTVL PGLIDLHTHLADLGQSADLAAPIKASPAETALVGARNARVTLEAGFTSVRDVGTYRGLTDVALRNAIDRGDVPGPRMWVA GAYITIPKGGGELNGVIPNEQLPPDMRLGVAVTSEEAAEKAAFLLDQGADFIKTIATGAVLAIGTEPGAPELTEDQLRAV VRVAHARGKRVTAHAHGAEGIKTAIRAGVDSIEHASVADEEALQLAKKHGTWLAMDIYNGDYIDEIGTKEGWPAEYLRKN RETTDAQRAAFRRAVELGVNIGYATDAGVYPHGLNARQFRNMVQYGMTPMQAIQSATGHAAEEMGRSDIGAIVPGRYADF VAVKADPLADITALEAIDHVMKGGVLVR >Mature_428_residues MQRFRQRHLSAALATSLLAASPTSAENLYIEAGRLIDGVSSEVRTGQCITVEAERIKAVAPCGPTPDGAKRLDWSAFTVL PGLIDLHTHLADLGQSADLAAPIKASPAETALVGARNARVTLEAGFTSVRDVGTYRGLTDVALRNAIDRGDVPGPRMWVA GAYITIPKGGGELNGVIPNEQLPPDMRLGVAVTSEEAAEKAAFLLDQGADFIKTIATGAVLAIGTEPGAPELTEDQLRAV VRVAHARGKRVTAHAHGAEGIKTAIRAGVDSIEHASVADEEALQLAKKHGTWLAMDIYNGDYIDEIGTKEGWPAEYLRKN RETTDAQRAAFRRAVELGVNIGYATDAGVYPHGLNARQFRNMVQYGMTPMQAIQSATGHAAEEMGRSDIGAIVPGRYADF VAVKADPLADITALEAIDHVMKGGVLVR
Specific function: Unknown
COG id: COG1228
COG function: function code Q; Imidazolonepropionase and related amidohydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To S.coelicolor SCO1861 [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322248, Length=335, Percent_Identity=31.9402985074627, Blast_Score=115, Evalue=1e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006680 [H]
Pfam domain/function: PF01979 Amidohydro_1 [H]
EC number: NA
Molecular weight: Translated: 45391; Mature: 45391
Theoretical pI: Translated: 5.98; Mature: 5.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRFRQRHLSAALATSLLAASPTSAENLYIEAGRLIDGVSSEVRTGQCITVEAERIKAVA CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCCCHHHCCCCEEEEEHHHEEEEC PCGPTPDGAKRLDWSAFTVLPGLIDLHTHLADLGQSADLAAPIKASPAETALVGARNARV CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHEEECCCCEE TLEAGFTSVRDVGTYRGLTDVALRNAIDRGDVPGPRMWVAGAYITIPKGGGELNGVIPNE EEECCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCC QLPPDMRLGVAVTSEEAAEKAAFLLDQGADFIKTIATGAVLAIGTEPGAPELTEDQLRAV CCCCCCEEEEEECCHHHHHHHHHHHHCCHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHH VRVAHARGKRVTAHAHGAEGIKTAIRAGVDSIEHASVADEEALQLAKKHGTWLAMDIYNG HHHHHHCCCEEEEECCCHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCEEEEEECCC DYIDEIGTKEGWPAEYLRKNRETTDAQRAAFRRAVELGVNIGYATDAGVYPHGLNARQFR CHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH NMVQYGMTPMQAIQSATGHAAEEMGRSDIGAIVPGRYADFVAVKADPLADITALEAIDHV HHHHHCCCHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH MKGGVLVR HHCCEECC >Mature Secondary Structure MQRFRQRHLSAALATSLLAASPTSAENLYIEAGRLIDGVSSEVRTGQCITVEAERIKAVA CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCCCHHHCCCCEEEEEHHHEEEEC PCGPTPDGAKRLDWSAFTVLPGLIDLHTHLADLGQSADLAAPIKASPAETALVGARNARV CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHEEECCCCEE TLEAGFTSVRDVGTYRGLTDVALRNAIDRGDVPGPRMWVAGAYITIPKGGGELNGVIPNE EEECCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCC QLPPDMRLGVAVTSEEAAEKAAFLLDQGADFIKTIATGAVLAIGTEPGAPELTEDQLRAV CCCCCCEEEEEECCHHHHHHHHHHHHCCHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHH VRVAHARGKRVTAHAHGAEGIKTAIRAGVDSIEHASVADEEALQLAKKHGTWLAMDIYNG HHHHHHCCCEEEEECCCHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCEEEEEECCC DYIDEIGTKEGWPAEYLRKNRETTDAQRAAFRRAVELGVNIGYATDAGVYPHGLNARQFR CHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH NMVQYGMTPMQAIQSATGHAAEEMGRSDIGAIVPGRYADFVAVKADPLADITALEAIDHV HHHHHCCCHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH MKGGVLVR HHCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]