Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486395

Identifier: 103486395

GI number: 103486395

Start: 914982

End: 915389

Strand: Direct

Name: 103486395

Synonym: Sala_0905

Alternate gene names: NA

Gene position: 914982-915389 (Clockwise)

Preceding gene: 103486390

Following gene: 103486396

Centisome position: 27.35

GC content: 62.75

Gene sequence:

>408_bases
ATGCTGACGCGAACCCTTCCGGTGATCGACCGGGACAATGAAGCTTTCTGGACCTGGGGGCGCGAGGGGAAGCTTGCCAT
CCATCGCTGCGCGAATTGCGCCTGTTTCGTGCATCCGCCGGTCCCGTTCTGTCCCTGTTGCGAAAGCCGCGACGTCGCGC
CGCAGCCTGTGTCGGGGCGCGGCCGAATCGTTACCTTCACCGTCAATCACAAGCCCTGGGTGCCTGATATTTCCGCGCCC
TATGTCCTTGCGCTCGTGGCGATCGAGGAACAGGACGATGTGCGCCTTGCCACCAACATCATCGGCTGCGCGGCCGAAGA
TGTGCGCTTCGACATGGAGGTGGAGGTCGTTTTCGAGGCGGCTGAGGACCTGTGGATCCCGCTTTTTCGTCCGGTGCCGT
CGGCATGA

Upstream 100 bases:

>100_bases
GACTCTCCTCTCGGCTGGCTTGTTCTTGTCGACATTCTCGCAAAAATTGACGATGTGTCAACTATTGGTTTATGACCTGG
TTTAATAAGTGGAGAGGCCG

Downstream 100 bases:

>100_bases
CCCGCTTCGCCGAGAAAAATGTCGCTATCACCGGCATCGGCATGTCGGACGTGTCGCGCGGCGCGGCGAAGTCGGCGCTG
GCGCTCACGGTCGATGCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MLTRTLPVIDRDNEAFWTWGREGKLAIHRCANCACFVHPPVPFCPCCESRDVAPQPVSGRGRIVTFTVNHKPWVPDISAP
YVLALVAIEEQDDVRLATNIIGCAAEDVRFDMEVEVVFEAAEDLWIPLFRPVPSA

Sequences:

>Translated_135_residues
MLTRTLPVIDRDNEAFWTWGREGKLAIHRCANCACFVHPPVPFCPCCESRDVAPQPVSGRGRIVTFTVNHKPWVPDISAP
YVLALVAIEEQDDVRLATNIIGCAAEDVRFDMEVEVVFEAAEDLWIPLFRPVPSA
>Mature_135_residues
MLTRTLPVIDRDNEAFWTWGREGKLAIHRCANCACFVHPPVPFCPCCESRDVAPQPVSGRGRIVTFTVNHKPWVPDISAP
YVLALVAIEEQDDVRLATNIIGCAAEDVRFDMEVEVVFEAAEDLWIPLFRPVPSA

Specific function: Unknown

COG id: COG1545

COG function: function code R; Predicted nucleic-acid-binding protein containing a Zn-ribbon

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15104; Mature: 15104

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
5.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTRTLPVIDRDNEAFWTWGREGKLAIHRCANCACFVHPPVPFCPCCESRDVAPQPVSGR
CCCCCCCEEECCCCEEEEECCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
GRIVTFTVNHKPWVPDISAPYVLALVAIEEQDDVRLATNIIGCAAEDVRFDMEVEVVFEA
CEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEEHHHEECCCCCEEECEEEEEEEEC
AEDLWIPLFRPVPSA
CCCCEEEEECCCCCC
>Mature Secondary Structure
MLTRTLPVIDRDNEAFWTWGREGKLAIHRCANCACFVHPPVPFCPCCESRDVAPQPVSGR
CCCCCCCEEECCCCEEEEECCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
GRIVTFTVNHKPWVPDISAPYVLALVAIEEQDDVRLATNIIGCAAEDVRFDMEVEVVFEA
CEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEEHHHEECCCCCEEECEEEEEEEEC
AEDLWIPLFRPVPSA
CCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA