| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486389
Identifier: 103486389
GI number: 103486389
Start: 907914
End: 908309
Strand: Direct
Name: 103486389
Synonym: Sala_0899
Alternate gene names: NA
Gene position: 907914-908309 (Clockwise)
Preceding gene: 103486388
Following gene: 103486390
Centisome position: 27.14
GC content: 64.39
Gene sequence:
>396_bases ATGAGACCTCTTCCCGAACTCACACCCGAAAACACCGCCTTCTGGACCGGCGGCGCGCAGGGTGAATTGTTGATCGCGCG CTGCGACGACTGCGATCATGCCATTCATCCGCCGCAGCTCGTCTGCCCCAAATGCTGGGGCACGGCGGTAAAGAGCCGGG CCGTCCCCGGCACCGGTACGGTCTACAGCTTTACCGTCAACCACCAGCCCTGGGCGCCGGGAATGGCGGTGCCCTTTGCC CTCGCGGTTGTCGATGTCGATGAAGCGCCGGGCGTCCGTATTACCGCTGAGGTGGTGAACGCACCCCCCGAAAGCGTCCA TATCGGCCAGCGGATGCGCGCGGTTTTCCACGCGATCGACGACATCTGGTTCCCGCAGTGGGAGCCCGTCCAATGA
Upstream 100 bases:
>100_bases CGCCCTTTTCCTACGATCTCGCCGTCACGGCGATCGTCGCACTGTGCGTCGGCGCGATCCTGATCGCCTTCCTCCTTCCC CGCTCCATCAGGGAAACGCC
Downstream 100 bases:
>100_bases GCATCAACGCCGCGATCACCGGGGTCGGCATGTCCGACATCGGGCGAAAGACCGGGCGCCCGGCGATGCTGCATCTGGTC GAAGCCGCGAGGCGCGCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 131; Mature: 131
Protein sequence:
>131_residues MRPLPELTPENTAFWTGGAQGELLIARCDDCDHAIHPPQLVCPKCWGTAVKSRAVPGTGTVYSFTVNHQPWAPGMAVPFA LAVVDVDEAPGVRITAEVVNAPPESVHIGQRMRAVFHAIDDIWFPQWEPVQ
Sequences:
>Translated_131_residues MRPLPELTPENTAFWTGGAQGELLIARCDDCDHAIHPPQLVCPKCWGTAVKSRAVPGTGTVYSFTVNHQPWAPGMAVPFA LAVVDVDEAPGVRITAEVVNAPPESVHIGQRMRAVFHAIDDIWFPQWEPVQ >Mature_131_residues MRPLPELTPENTAFWTGGAQGELLIARCDDCDHAIHPPQLVCPKCWGTAVKSRAVPGTGTVYSFTVNHQPWAPGMAVPFA LAVVDVDEAPGVRITAEVVNAPPESVHIGQRMRAVFHAIDDIWFPQWEPVQ
Specific function: Unknown
COG id: COG1545
COG function: function code R; Predicted nucleic-acid-binding protein containing a Zn-ribbon
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14305; Mature: 14305
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPLPELTPENTAFWTGGAQGELLIARCDDCDHAIHPPQLVCPKCWGTAVKSRAVPGTGT CCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCEECCCHHCHHHHCCCCCCCCC VYSFTVNHQPWAPGMAVPFALAVVDVDEAPGVRITAEVVNAPPESVHIGQRMRAVFHAID EEEEEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH DIWFPQWEPVQ HHCCCCCCCCC >Mature Secondary Structure MRPLPELTPENTAFWTGGAQGELLIARCDDCDHAIHPPQLVCPKCWGTAVKSRAVPGTGT CCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCEECCCHHCHHHHCCCCCCCCC VYSFTVNHQPWAPGMAVPFALAVVDVDEAPGVRITAEVVNAPPESVHIGQRMRAVFHAID EEEEEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH DIWFPQWEPVQ HHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA