Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486378

Identifier: 103486378

GI number: 103486378

Start: 895533

End: 896651

Strand: Reverse

Name: 103486378

Synonym: Sala_0888

Alternate gene names: NA

Gene position: 896651-895533 (Counterclockwise)

Preceding gene: 103486386

Following gene: 103486368

Centisome position: 26.8

GC content: 62.65

Gene sequence:

>1119_bases
GTGAAACCCTTTGTTTTCAGCGCCGACAGCCATATCATGGAACCCGCCGACCTTTTTCTCGACGGACTCCCCGCCTCGTT
GAAGGATCATGCGATCCATTCGCGCAAGGAGGGGGAGTATTTGATCACCGGGACCAGGGACAAGATTATCCATCGCCTCC
GCATCGGGCAGCATCGCGAGCAGGAACTGGGGGATTCCCAGCGCAAAGGTATCCGCGAAATCCCCGGTCGCCTGGACGAT
ATGGAGCTGGAAGGGATCGACGCCGAAATCTGTTTCCCTTCGCTTGGTCTGTGGCTTTACTGCCTCGAGAACGCAGAGGC
CGAAGCGGCGTCGGCGCGGCTTTACAACGACTGGAACGACCGCTTTCTTGGCGCCCATCCGAACCGGTTCGTGCGGTGCG
GCATGTTGCCGGTGCTCGATTTTTCAAACACGATTGCCGAGCTCGATTATCTGGCGTCAAAGGGCTTCACCGCCGCGATG
CTGCCCGCCACGACGCCCGGCAATTTGCCCAAATATAATGACGAGGCGTGGGATCCGGTATTCGCGAAAGCGGCCGCCCT
CGGTATCGTGTTCGTCATGCACACCGGCACCGGTCTGGAGACGGTGGTGGTCGAGCGCGGGCCCGGCGCCGCGATCATCA
ACTATGCGAACCAGATGAACGACGCCCAGCGCAGCGTGATGTATCTTGTCGCGGGCGGCGTGCTCGACCGCAATCGCGGC
GCGAAGGTTGCCTTTATCGAAAGCGGTGCGAGCTGGCTCGTCGCGCTTGCCGAGCGGATGGACGAGGTGTCGGTCGCGCA
CGCCAAATTTGTGCGCCCCAAGCTCGACCGCGCGCCCAGCCAGATCATCGATGACCAGGTGTGGGCCAGCTTCCAGCACG
ATCGCGGCTGCATCACCGCGGCCGCCGCCGGGTTGGCCGGCGCGAAGAACGTCATGTGGGGATCGGACTATCCCCATGCC
GAGGGCACATTCCCGATCAGCCGCCGCGTCGTCGACGAATTGTTCGAAGGACTGGACGTCAGCGAAGCGGTCCGCCGCGA
CATATTGGGCCTGAACGCCGCGCGGCTGTTCGGTATCGATCCGGTGGTGCAGACAAGCGCAACGGCGGTGGCGGCGTAA

Upstream 100 bases:

>100_bases
CATGTTCGTCGATAATCCATGATATTCTTTGCTTGACTTATATAACTAGGTATCTTTTAATCGCTCAAAGATCAGACGCG
AGTCGAGAGGAGATTGCCCC

Downstream 100 bases:

>100_bases
CCCGCCCCGCGCTCTTCGCACGGGCCGGATGGCGCTATTCTTCGATCGGTTTCGCCGTCCGGCCCGCCATGATCGCAGCT
ACGCCGCCCACCAGCAGGCA

Product: amidohydrolase 2

Products: NA

Alternate protein names: Amidase; Amidohydrolase Family Protein; 2-Amino-3-Carboxymuconate-6- Semialdehyde Decarboxylase; Barh Protein; TIM-Barrel Fold Metal-Dependent Hydrolase; Metal-Dependent Amidohydrolase; Amidohydrolase 2 Protein; Hydrolase; Aminocarboxymuconate-Semialdehyde Decarboxylase; Amidohydrolase Family; Minocarboxymuconate-Semialdehyde Decarboxylase.

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MKPFVFSADSHIMEPADLFLDGLPASLKDHAIHSRKEGEYLITGTRDKIIHRLRIGQHREQELGDSQRKGIREIPGRLDD
MELEGIDAEICFPSLGLWLYCLENAEAEAASARLYNDWNDRFLGAHPNRFVRCGMLPVLDFSNTIAELDYLASKGFTAAM
LPATTPGNLPKYNDEAWDPVFAKAAALGIVFVMHTGTGLETVVVERGPGAAIINYANQMNDAQRSVMYLVAGGVLDRNRG
AKVAFIESGASWLVALAERMDEVSVAHAKFVRPKLDRAPSQIIDDQVWASFQHDRGCITAAAAGLAGAKNVMWGSDYPHA
EGTFPISRRVVDELFEGLDVSEAVRRDILGLNAARLFGIDPVVQTSATAVAA

Sequences:

>Translated_372_residues
MKPFVFSADSHIMEPADLFLDGLPASLKDHAIHSRKEGEYLITGTRDKIIHRLRIGQHREQELGDSQRKGIREIPGRLDD
MELEGIDAEICFPSLGLWLYCLENAEAEAASARLYNDWNDRFLGAHPNRFVRCGMLPVLDFSNTIAELDYLASKGFTAAM
LPATTPGNLPKYNDEAWDPVFAKAAALGIVFVMHTGTGLETVVVERGPGAAIINYANQMNDAQRSVMYLVAGGVLDRNRG
AKVAFIESGASWLVALAERMDEVSVAHAKFVRPKLDRAPSQIIDDQVWASFQHDRGCITAAAAGLAGAKNVMWGSDYPHA
EGTFPISRRVVDELFEGLDVSEAVRRDILGLNAARLFGIDPVVQTSATAVAA
>Mature_372_residues
MKPFVFSADSHIMEPADLFLDGLPASLKDHAIHSRKEGEYLITGTRDKIIHRLRIGQHREQELGDSQRKGIREIPGRLDD
MELEGIDAEICFPSLGLWLYCLENAEAEAASARLYNDWNDRFLGAHPNRFVRCGMLPVLDFSNTIAELDYLASKGFTAAM
LPATTPGNLPKYNDEAWDPVFAKAAALGIVFVMHTGTGLETVVVERGPGAAIINYANQMNDAQRSVMYLVAGGVLDRNRG
AKVAFIESGASWLVALAERMDEVSVAHAKFVRPKLDRAPSQIIDDQVWASFQHDRGCITAAAAGLAGAKNVMWGSDYPHA
EGTFPISRRVVDELFEGLDVSEAVRRDILGLNAARLFGIDPVVQTSATAVAA

Specific function: Unknown

COG id: COG2159

COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40664; Mature: 40664

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPFVFSADSHIMEPADLFLDGLPASLKDHAIHSRKEGEYLITGTRDKIIHRLRIGQHRE
CCCEEECCCCCCCCHHHHHHCCCCCHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHH
QELGDSQRKGIREIPGRLDDMELEGIDAEICFPSLGLWLYCLENAEAEAASARLYNDWND
HHCCCHHHCCHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
RFLGAHPNRFVRCGMLPVLDFSNTIAELDYLASKGFTAAMLPATTPGNLPKYNDEAWDPV
CCCCCCCCCEEEECCCEECCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHH
FAKAAALGIVFVMHTGTGLETVVVERGPGAAIINYANQMNDAQRSVMYLVAGGVLDRNRG
HHHHHHHHEEEEEECCCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHCCCCEECCCC
AKVAFIESGASWLVALAERMDEVSVAHAKFVRPKLDRAPSQIIDDQVWASFQHDRGCITA
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCHHHH
AAAGLAGAKNVMWGSDYPHAEGTFPISRRVVDELFEGLDVSEAVRRDILGLNAARLFGID
HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHCCCC
PVVQTSATAVAA
HHHHCCCHHHCC
>Mature Secondary Structure
MKPFVFSADSHIMEPADLFLDGLPASLKDHAIHSRKEGEYLITGTRDKIIHRLRIGQHRE
CCCEEECCCCCCCCHHHHHHCCCCCHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCHHH
QELGDSQRKGIREIPGRLDDMELEGIDAEICFPSLGLWLYCLENAEAEAASARLYNDWND
HHCCCHHHCCHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
RFLGAHPNRFVRCGMLPVLDFSNTIAELDYLASKGFTAAMLPATTPGNLPKYNDEAWDPV
CCCCCCCCCEEEECCCEECCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHH
FAKAAALGIVFVMHTGTGLETVVVERGPGAAIINYANQMNDAQRSVMYLVAGGVLDRNRG
HHHHHHHHEEEEEECCCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHCCCCEECCCC
AKVAFIESGASWLVALAERMDEVSVAHAKFVRPKLDRAPSQIIDDQVWASFQHDRGCITA
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCHHHH
AAAGLAGAKNVMWGSDYPHAEGTFPISRRVVDELFEGLDVSEAVRRDILGLNAARLFGID
HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHCCCC
PVVQTSATAVAA
HHHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA