Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486347

Identifier: 103486347

GI number: 103486347

Start: 865252

End: 866172

Strand: Direct

Name: 103486347

Synonym: Sala_0857

Alternate gene names: NA

Gene position: 865252-866172 (Clockwise)

Preceding gene: 103486346

Following gene: 103486355

Centisome position: 25.87

GC content: 66.78

Gene sequence:

>921_bases
ATGTTTGGCGAGTTGTCGCTTCCGCTGATGTGTGCGCCGATGAGCATCGCCTCATCGGTTCCGCTGGCCCTGGCTTGCTG
TCGGGCCGGGGTCATCGGTGGATGGCAGGGCGGCTCGCTTACGCCGTTCGAAATGTTCGAATCCTATTTGGAGGCGCTGG
ACGGGATCGGCGGCGCGCCGCCGATCGTCAACCTGCCCGCCCGTTGGGGGCGCGATCCTGCGGCGGCCGAGCGGATCGAC
TGCCTCGAACGTCATCGCGTCCCGCTTGTCCTGTCCAGCCTCGGCGACCCGTCGGCGCTGGTCGAGCGGGTTCACGGATG
GGGCGGACGGGTGATCCACGACGTTACGACGATGAAGCACGCCGAAAAGGCGATCGCGGCGGGCGCCGACGGATTGATGC
TGACCTGCGCCGGAGCGGGCGGCCACACCGGTTTTCTGACGCCAATGGCTTTCGTGCCGGCGGTGCGGCGGCGATTCGAC
GGCTTGCTGATCGTCGCGGGAGGTATCGCCGACGCGCATGGCATCGCCGCCGCGCTGGCGCTGGGGGGCGATATTGCGTG
CATGGGAACGCGCTTCATCGCGACGCCGGAAAGCGGCGTGGCCGAGGGACATCGCACCATGATCCCGGCAGTCGGTGTCG
ATGACATCATGGTTTCGGCGGCGATGAACGGCGTCCCCGCGCATTGGATGCGCCCATCGGTGGAAGCAGTAGGCCTCGAT
CCAAAGTCGCTTCCGTCGACGCGCACGGCAATGCCCGAAGGGGTAAGGCCGTGGCGCGATATATGGAGCGCGGGCCAAAG
TGCGGGCCTGATCGACATGGTCGAACCGGTCGCCGATCTCGTTGCCCGTCTTCGCCGTGATTTCAACGCATTGCCGGCGC
TTCCCGATTGGCGGGGGCGGTTGGCGGACATCGCGTTCTAG

Upstream 100 bases:

>100_bases
GACATCGACGGCGGGATCGGCTGGGGCGAAGACCAGGATGTTTGGAACCCGGCCCATTATGTGCGGATGCTCGATGCGTT
GAAGGCGACCGTTTGACGCC

Downstream 100 bases:

>100_bases
CGCGGCGTGCTGGACATCTGACCCATCGTCAGCACGATCCGTCCCGCGCTTTCGCCGGTCTCCGCATCCTGCATTGCGGC
GCAAAAATCCTCCAGGGGAT

Product: 2-nitropropane dioxygenase, NPD

Products: NA

Alternate protein names: Nitroalkane oxidase [H]

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MFGELSLPLMCAPMSIASSVPLALACCRAGVIGGWQGGSLTPFEMFESYLEALDGIGGAPPIVNLPARWGRDPAAAERID
CLERHRVPLVLSSLGDPSALVERVHGWGGRVIHDVTTMKHAEKAIAAGADGLMLTCAGAGGHTGFLTPMAFVPAVRRRFD
GLLIVAGGIADAHGIAAALALGGDIACMGTRFIATPESGVAEGHRTMIPAVGVDDIMVSAAMNGVPAHWMRPSVEAVGLD
PKSLPSTRTAMPEGVRPWRDIWSAGQSAGLIDMVEPVADLVARLRRDFNALPALPDWRGRLADIAF

Sequences:

>Translated_306_residues
MFGELSLPLMCAPMSIASSVPLALACCRAGVIGGWQGGSLTPFEMFESYLEALDGIGGAPPIVNLPARWGRDPAAAERID
CLERHRVPLVLSSLGDPSALVERVHGWGGRVIHDVTTMKHAEKAIAAGADGLMLTCAGAGGHTGFLTPMAFVPAVRRRFD
GLLIVAGGIADAHGIAAALALGGDIACMGTRFIATPESGVAEGHRTMIPAVGVDDIMVSAAMNGVPAHWMRPSVEAVGLD
PKSLPSTRTAMPEGVRPWRDIWSAGQSAGLIDMVEPVADLVARLRRDFNALPALPDWRGRLADIAF
>Mature_306_residues
MFGELSLPLMCAPMSIASSVPLALACCRAGVIGGWQGGSLTPFEMFESYLEALDGIGGAPPIVNLPARWGRDPAAAERID
CLERHRVPLVLSSLGDPSALVERVHGWGGRVIHDVTTMKHAEKAIAAGADGLMLTCAGAGGHTGFLTPMAFVPAVRRRFD
GLLIVAGGIADAHGIAAALALGGDIACMGTRFIATPESGVAEGHRTMIPAVGVDDIMVSAAMNGVPAHWMRPSVEAVGLD
PKSLPSTRTAMPEGVRPWRDIWSAGQSAGLIDMVEPVADLVARLRRDFNALPALPDWRGRLADIAF

Specific function: Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites [H]

COG id: COG2070

COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitronate monooxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004136
- InterPro:   IPR013785 [H]

Pfam domain/function: PF03060 NPD [H]

EC number: =1.13.12.16 [H]

Molecular weight: Translated: 32009; Mature: 32009

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGELSLPLMCAPMSIASSVPLALACCRAGVIGGWQGGSLTPFEMFESYLEALDGIGGAP
CCCCCCCCCEECCHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
PIVNLPARWGRDPAAAERIDCLERHRVPLVLSSLGDPSALVERVHGWGGRVIHDVTTMKH
CCEECCHHHCCCHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHH
AEKAIAAGADGLMLTCAGAGGHTGFLTPMAFVPAVRRRFDGLLIVAGGIADAHGIAAALA
HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHH
LGGDIACMGTRFIATPESGVAEGHRTMIPAVGVDDIMVSAAMNGVPAHWMRPSVEAVGLD
HCCCEEEECCEEEECCCCCHHCCCCEECCCCCHHHHHHHHHHCCCCCHHCCCCCCEECCC
PKSLPSTRTAMPEGVRPWRDIWSAGQSAGLIDMVEPVADLVARLRRDFNALPALPDWRGR
CCCCCCCHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCC
LADIAF
HHHCCC
>Mature Secondary Structure
MFGELSLPLMCAPMSIASSVPLALACCRAGVIGGWQGGSLTPFEMFESYLEALDGIGGAP
CCCCCCCCCEECCHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
PIVNLPARWGRDPAAAERIDCLERHRVPLVLSSLGDPSALVERVHGWGGRVIHDVTTMKH
CCEECCHHHCCCHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHH
AEKAIAAGADGLMLTCAGAGGHTGFLTPMAFVPAVRRRFDGLLIVAGGIADAHGIAAALA
HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHH
LGGDIACMGTRFIATPESGVAEGHRTMIPAVGVDDIMVSAAMNGVPAHWMRPSVEAVGLD
HCCCEEEECCEEEECCCCCHHCCCCEECCCCCHHHHHHHHHHCCCCCHHCCCCCCEECCC
PKSLPSTRTAMPEGVRPWRDIWSAGQSAGLIDMVEPVADLVARLRRDFNALPALPDWRGR
CCCCCCCHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCC
LADIAF
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA