| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486347
Identifier: 103486347
GI number: 103486347
Start: 865252
End: 866172
Strand: Direct
Name: 103486347
Synonym: Sala_0857
Alternate gene names: NA
Gene position: 865252-866172 (Clockwise)
Preceding gene: 103486346
Following gene: 103486355
Centisome position: 25.87
GC content: 66.78
Gene sequence:
>921_bases ATGTTTGGCGAGTTGTCGCTTCCGCTGATGTGTGCGCCGATGAGCATCGCCTCATCGGTTCCGCTGGCCCTGGCTTGCTG TCGGGCCGGGGTCATCGGTGGATGGCAGGGCGGCTCGCTTACGCCGTTCGAAATGTTCGAATCCTATTTGGAGGCGCTGG ACGGGATCGGCGGCGCGCCGCCGATCGTCAACCTGCCCGCCCGTTGGGGGCGCGATCCTGCGGCGGCCGAGCGGATCGAC TGCCTCGAACGTCATCGCGTCCCGCTTGTCCTGTCCAGCCTCGGCGACCCGTCGGCGCTGGTCGAGCGGGTTCACGGATG GGGCGGACGGGTGATCCACGACGTTACGACGATGAAGCACGCCGAAAAGGCGATCGCGGCGGGCGCCGACGGATTGATGC TGACCTGCGCCGGAGCGGGCGGCCACACCGGTTTTCTGACGCCAATGGCTTTCGTGCCGGCGGTGCGGCGGCGATTCGAC GGCTTGCTGATCGTCGCGGGAGGTATCGCCGACGCGCATGGCATCGCCGCCGCGCTGGCGCTGGGGGGCGATATTGCGTG CATGGGAACGCGCTTCATCGCGACGCCGGAAAGCGGCGTGGCCGAGGGACATCGCACCATGATCCCGGCAGTCGGTGTCG ATGACATCATGGTTTCGGCGGCGATGAACGGCGTCCCCGCGCATTGGATGCGCCCATCGGTGGAAGCAGTAGGCCTCGAT CCAAAGTCGCTTCCGTCGACGCGCACGGCAATGCCCGAAGGGGTAAGGCCGTGGCGCGATATATGGAGCGCGGGCCAAAG TGCGGGCCTGATCGACATGGTCGAACCGGTCGCCGATCTCGTTGCCCGTCTTCGCCGTGATTTCAACGCATTGCCGGCGC TTCCCGATTGGCGGGGGCGGTTGGCGGACATCGCGTTCTAG
Upstream 100 bases:
>100_bases GACATCGACGGCGGGATCGGCTGGGGCGAAGACCAGGATGTTTGGAACCCGGCCCATTATGTGCGGATGCTCGATGCGTT GAAGGCGACCGTTTGACGCC
Downstream 100 bases:
>100_bases CGCGGCGTGCTGGACATCTGACCCATCGTCAGCACGATCCGTCCCGCGCTTTCGCCGGTCTCCGCATCCTGCATTGCGGC GCAAAAATCCTCCAGGGGAT
Product: 2-nitropropane dioxygenase, NPD
Products: NA
Alternate protein names: Nitroalkane oxidase [H]
Number of amino acids: Translated: 306; Mature: 306
Protein sequence:
>306_residues MFGELSLPLMCAPMSIASSVPLALACCRAGVIGGWQGGSLTPFEMFESYLEALDGIGGAPPIVNLPARWGRDPAAAERID CLERHRVPLVLSSLGDPSALVERVHGWGGRVIHDVTTMKHAEKAIAAGADGLMLTCAGAGGHTGFLTPMAFVPAVRRRFD GLLIVAGGIADAHGIAAALALGGDIACMGTRFIATPESGVAEGHRTMIPAVGVDDIMVSAAMNGVPAHWMRPSVEAVGLD PKSLPSTRTAMPEGVRPWRDIWSAGQSAGLIDMVEPVADLVARLRRDFNALPALPDWRGRLADIAF
Sequences:
>Translated_306_residues MFGELSLPLMCAPMSIASSVPLALACCRAGVIGGWQGGSLTPFEMFESYLEALDGIGGAPPIVNLPARWGRDPAAAERID CLERHRVPLVLSSLGDPSALVERVHGWGGRVIHDVTTMKHAEKAIAAGADGLMLTCAGAGGHTGFLTPMAFVPAVRRRFD GLLIVAGGIADAHGIAAALALGGDIACMGTRFIATPESGVAEGHRTMIPAVGVDDIMVSAAMNGVPAHWMRPSVEAVGLD PKSLPSTRTAMPEGVRPWRDIWSAGQSAGLIDMVEPVADLVARLRRDFNALPALPDWRGRLADIAF >Mature_306_residues MFGELSLPLMCAPMSIASSVPLALACCRAGVIGGWQGGSLTPFEMFESYLEALDGIGGAPPIVNLPARWGRDPAAAERID CLERHRVPLVLSSLGDPSALVERVHGWGGRVIHDVTTMKHAEKAIAAGADGLMLTCAGAGGHTGFLTPMAFVPAVRRRFD GLLIVAGGIADAHGIAAALALGGDIACMGTRFIATPESGVAEGHRTMIPAVGVDDIMVSAAMNGVPAHWMRPSVEAVGLD PKSLPSTRTAMPEGVRPWRDIWSAGQSAGLIDMVEPVADLVARLRRDFNALPALPDWRGRLADIAF
Specific function: Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites [H]
COG id: COG2070
COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitronate monooxygenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004136 - InterPro: IPR013785 [H]
Pfam domain/function: PF03060 NPD [H]
EC number: =1.13.12.16 [H]
Molecular weight: Translated: 32009; Mature: 32009
Theoretical pI: Translated: 6.09; Mature: 6.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFGELSLPLMCAPMSIASSVPLALACCRAGVIGGWQGGSLTPFEMFESYLEALDGIGGAP CCCCCCCCCEECCHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC PIVNLPARWGRDPAAAERIDCLERHRVPLVLSSLGDPSALVERVHGWGGRVIHDVTTMKH CCEECCHHHCCCHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHH AEKAIAAGADGLMLTCAGAGGHTGFLTPMAFVPAVRRRFDGLLIVAGGIADAHGIAAALA HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHH LGGDIACMGTRFIATPESGVAEGHRTMIPAVGVDDIMVSAAMNGVPAHWMRPSVEAVGLD HCCCEEEECCEEEECCCCCHHCCCCEECCCCCHHHHHHHHHHCCCCCHHCCCCCCEECCC PKSLPSTRTAMPEGVRPWRDIWSAGQSAGLIDMVEPVADLVARLRRDFNALPALPDWRGR CCCCCCCHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCC LADIAF HHHCCC >Mature Secondary Structure MFGELSLPLMCAPMSIASSVPLALACCRAGVIGGWQGGSLTPFEMFESYLEALDGIGGAP CCCCCCCCCEECCHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC PIVNLPARWGRDPAAAERIDCLERHRVPLVLSSLGDPSALVERVHGWGGRVIHDVTTMKH CCEECCHHHCCCHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHH AEKAIAAGADGLMLTCAGAGGHTGFLTPMAFVPAVRRRFDGLLIVAGGIADAHGIAAALA HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHH LGGDIACMGTRFIATPESGVAEGHRTMIPAVGVDDIMVSAAMNGVPAHWMRPSVEAVGLD HCCCEEEECCEEEECCCCCHHCCCCEECCCCCHHHHHHHHHHCCCCCHHCCCCCCEECCC PKSLPSTRTAMPEGVRPWRDIWSAGQSAGLIDMVEPVADLVARLRRDFNALPALPDWRGR CCCCCCCHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCC LADIAF HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA