| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486346
Identifier: 103486346
GI number: 103486346
Start: 864189
End: 865247
Strand: Direct
Name: 103486346
Synonym: Sala_0856
Alternate gene names: NA
Gene position: 864189-865247 (Clockwise)
Preceding gene: 103486345
Following gene: 103486347
Centisome position: 25.83
GC content: 62.32
Gene sequence:
>1059_bases ATGACCGACGACCTCGCCTTTCGCCCGGAAGATGACCGCTATCACCAATTGTCGGACGATCCGTATGAAACGGAAACCAA TTGGTGGTCGTTCAACATTCCCGAACGCAAGCTCGGCTGCTGGATCCATGCACCCTATTATCCCAACCGCAAGGCCGTGA CCTGGCGGATATTCGCCTGGGACGACGAAGGTTATGATCAGGCGCGCATGGCCTATTATCGCAAGGTCGAAGAGGCGCCG ATGCCCGACGACCCCGACCTGACCGACATCATTTTCCCCGGCGATGCGAACGGACCCGGCTATTCGCTGCGGATGCTGGA GCCGGGAATGAAATATCATCTGCAATATGAGGATCGCGCGCGCGGTTTTGCGCTGGACTTCACACATGGCGGCCTGCATC CGCCGCATCGCTTTCCGCCCGGCAAGCCGCCCTTCATGGCCACGCCGCACTTTGACCAGCTCGGCCATGTCGAAGGGTGG ATGACACTGCGCGGAGAGCGTATCCGCATCGACGGCATCGGGGTGCGTGATCGCACCTGGGGGCCGCGCGGCGGCCCCTA TGCCGCAAGCCCCAAACGCTATGCCAGCGACATGGAACGGGTAAAGCGGCCCGGCGGCGCCCACTGGCGCGAGATCGAGC GCGAACGGGGGCGCGGGCGCATCCAGTATATCTTTGGTCACCGCCACGACGGCACCGGCTTTCTGGGTTTTGTGCGTGTC GCCGATGGGGATGCCGACGGCTGGGCGCCGATGAACGCGGGCTGGATTCGCCGCGATGGCTGCTTCGGCAGCCTCGATCC CGCGCGTTCGCGGATGCGGACCTTTCGCAGCCCGAAAACGGGATGGAGCACACATATGCAGGTTGAACTGGTCGACGAAC AGGGTCGCGAAATGAAAAGCGAAGGCTTTGCGGTGAGCACGATGAGCGAAGCGGGCTATGGCGTGAACCAGTTGATGCGT TGGGACATCGACGGCGGGATCGGCTGGGGCGAAGACCAGGATGTTTGGAACCCGGCCCATTATGTGCGGATGCTCGATGC GTTGAAGGCGACCGTTTGA
Upstream 100 bases:
>100_bases GGCTCGACAGGGGCGTTATCGCCGATGCCGAAAAAGTCCCCGACGCCGCCCGGATCGCGGCGTTCCTTGTCGCCGCGTTC GACGAACTGGAGAAAATCGC
Downstream 100 bases:
>100_bases CGCCATGTTTGGCGAGTTGTCGCTTCCGCTGATGTGTGCGCCGATGAGCATCGCCTCATCGGTTCCGCTGGCCCTGGCTT GCTGTCGGGCCGGGGTCATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 352; Mature: 351
Protein sequence:
>352_residues MTDDLAFRPEDDRYHQLSDDPYETETNWWSFNIPERKLGCWIHAPYYPNRKAVTWRIFAWDDEGYDQARMAYYRKVEEAP MPDDPDLTDIIFPGDANGPGYSLRMLEPGMKYHLQYEDRARGFALDFTHGGLHPPHRFPPGKPPFMATPHFDQLGHVEGW MTLRGERIRIDGIGVRDRTWGPRGGPYAASPKRYASDMERVKRPGGAHWREIERERGRGRIQYIFGHRHDGTGFLGFVRV ADGDADGWAPMNAGWIRRDGCFGSLDPARSRMRTFRSPKTGWSTHMQVELVDEQGREMKSEGFAVSTMSEAGYGVNQLMR WDIDGGIGWGEDQDVWNPAHYVRMLDALKATV
Sequences:
>Translated_352_residues MTDDLAFRPEDDRYHQLSDDPYETETNWWSFNIPERKLGCWIHAPYYPNRKAVTWRIFAWDDEGYDQARMAYYRKVEEAP MPDDPDLTDIIFPGDANGPGYSLRMLEPGMKYHLQYEDRARGFALDFTHGGLHPPHRFPPGKPPFMATPHFDQLGHVEGW MTLRGERIRIDGIGVRDRTWGPRGGPYAASPKRYASDMERVKRPGGAHWREIERERGRGRIQYIFGHRHDGTGFLGFVRV ADGDADGWAPMNAGWIRRDGCFGSLDPARSRMRTFRSPKTGWSTHMQVELVDEQGREMKSEGFAVSTMSEAGYGVNQLMR WDIDGGIGWGEDQDVWNPAHYVRMLDALKATV >Mature_351_residues TDDLAFRPEDDRYHQLSDDPYETETNWWSFNIPERKLGCWIHAPYYPNRKAVTWRIFAWDDEGYDQARMAYYRKVEEAPM PDDPDLTDIIFPGDANGPGYSLRMLEPGMKYHLQYEDRARGFALDFTHGGLHPPHRFPPGKPPFMATPHFDQLGHVEGWM TLRGERIRIDGIGVRDRTWGPRGGPYAASPKRYASDMERVKRPGGAHWREIERERGRGRIQYIFGHRHDGTGFLGFVRVA DGDADGWAPMNAGWIRRDGCFGSLDPARSRMRTFRSPKTGWSTHMQVELVDEQGREMKSEGFAVSTMSEAGYGVNQLMRW DIDGGIGWGEDQDVWNPAHYVRMLDALKATV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40530; Mature: 40399
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDDLAFRPEDDRYHQLSDDPYETETNWWSFNIPERKLGCWIHAPYYPNRKAVTWRIFAW CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHCCEEEECCCCCCCCEEEEEEEEE DDEGYDQARMAYYRKVEEAPMPDDPDLTDIIFPGDANGPGYSLRMLEPGMKYHLQYEDRA CCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCC RGFALDFTHGGLHPPHRFPPGKPPFMATPHFDQLGHVEGWMTLRGERIRIDGIGVRDRTW CCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEECCCEEEEEEECCCCCCC GPRGGPYAASPKRYASDMERVKRPGGAHWREIERERGRGRIQYIFGHRHDGTGFLGFVRV CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEEE ADGDADGWAPMNAGWIRRDGCFGSLDPARSRMRTFRSPKTGWSTHMQVELVDEQGREMKS ECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHH EGFAVSTMSEAGYGVNQLMRWDIDGGIGWGEDQDVWNPAHYVRMLDALKATV CCEEEEEHHHCCCCHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure TDDLAFRPEDDRYHQLSDDPYETETNWWSFNIPERKLGCWIHAPYYPNRKAVTWRIFAW CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHCCEEEECCCCCCCCEEEEEEEEE DDEGYDQARMAYYRKVEEAPMPDDPDLTDIIFPGDANGPGYSLRMLEPGMKYHLQYEDRA CCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCC RGFALDFTHGGLHPPHRFPPGKPPFMATPHFDQLGHVEGWMTLRGERIRIDGIGVRDRTW CCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEECCCEEEEEEECCCCCCC GPRGGPYAASPKRYASDMERVKRPGGAHWREIERERGRGRIQYIFGHRHDGTGFLGFVRV CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEEE ADGDADGWAPMNAGWIRRDGCFGSLDPARSRMRTFRSPKTGWSTHMQVELVDEQGREMKS ECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHH EGFAVSTMSEAGYGVNQLMRWDIDGGIGWGEDQDVWNPAHYVRMLDALKATV CCEEEEEHHHCCCCHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA