| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486309
Identifier: 103486309
GI number: 103486309
Start: 822995
End: 823669
Strand: Direct
Name: 103486309
Synonym: Sala_0818
Alternate gene names: NA
Gene position: 822995-823669 (Clockwise)
Preceding gene: 103486307
Following gene: 103486310
Centisome position: 24.6
GC content: 64.3
Gene sequence:
>675_bases ATGATGGGCGAGCGAACGGTGATGCAGGAAGCGCTGTTCTACAGCTTCAGCATCGAGAACCACGTGCCTGCAGATCACCT GCTCCGGTCGATCGACCGGTTCGTCGATCTGGGCGGCCTCCGCGAGCATCTGCGGCCCTATTACAGCGAGATGGGGCGCC CCTCGATCGATCCCGAGCTGATGAACCGGATGCTGATCATCGGCTACTGCATGGGCATCCGTTCCGAGCGACGACTGTGC GAGGCGGTGCATCTCAACCTCGCCTACCGCTGGTTCTGCCGTTTAGGTCTCGAAGGTGCGGTGCCCGATCACTCGACCTT CTCAAAGAACCGCCACGGCCGGTTCCGCGATAGCGACCTACTGCGCCGACTGTTCGAGATGGCTGTCGAGCGCTGCATGG CCGAGGGGCTGGTCGGCGGAGAGGGCTTTGCAGTCGATGCGAGCCTCATCCGCGCCGATGTTCACCGGCAGCGTTCAGTA ACAGGCGAGGAAGGCCTGCCGACCGAAGCGGCGGGACGCGCCGTGCGCGAGTATCTGGAAGTGCTCGACGATGCTGCCTT CGGCGGCGCGACGCCGGTGAGACACCCAAGCGGATCAACCTTACCGACCCTGCGTCGCGCTGGACCGCGGCCACGCGCGA GGCGGCGTTCTACTCCTACAGCACCAACTAGCTGA
Upstream 100 bases:
>100_bases TTTGTGGTGTCCGCGTTGGGGTATATTCTGTTGAAAAACTCGCCCTTGCGGAGGGGCTGAAGTCCTGATTCAACCTGAGG GTTATCGGGAGGATCAGCTG
Downstream 100 bases:
>100_bases TCGACCTCGACCACGCTGTGATCGTCGATGTCGAAGCGACGACCTCGGTCCGCCAGGCCGAGATGACCGCCCAACGCAGG ATGATCGAGCGAACGCAGGA
Product: transposase and inactivated derivative
Products: NA
Alternate protein names: Transposase IS4 Family Protein; ISBma2 Transposase; ISPsy22 Transposase Truncated; IS5 Family Transposase N-Terminal Domain Protein; Transposase IS4 Family; Transposase Is4 Family Protein; IS4 Family Transposase; Transposase And Inactivated Derivative; ISGsu3 Transposase; ISMca1 Transposase; IS5 Family Transposase N-Terminal Domain; IS4 Transposase; Transposase For IS; Transposase-Related Protein; Transposase Mutator Type; Phage-Associated Cell Wall Hydrolase; Transposase Truncated; ISGsu2 Transposase; Transposase For Insertion Sequence NGRIS-8b; ISSag8 Transposase; Transposase Fragment
Number of amino acids: Translated: 224; Mature: 224
Protein sequence:
>224_residues MMGERTVMQEALFYSFSIENHVPADHLLRSIDRFVDLGGLREHLRPYYSEMGRPSIDPELMNRMLIIGYCMGIRSERRLC EAVHLNLAYRWFCRLGLEGAVPDHSTFSKNRHGRFRDSDLLRRLFEMAVERCMAEGLVGGEGFAVDASLIRADVHRQRSV TGEEGLPTEAAGRAVREYLEVLDDAAFGGATPVRHPSGSTLPTLRRAGPRPRARRRSTPTAPTS
Sequences:
>Translated_224_residues MMGERTVMQEALFYSFSIENHVPADHLLRSIDRFVDLGGLREHLRPYYSEMGRPSIDPELMNRMLIIGYCMGIRSERRLC EAVHLNLAYRWFCRLGLEGAVPDHSTFSKNRHGRFRDSDLLRRLFEMAVERCMAEGLVGGEGFAVDASLIRADVHRQRSV TGEEGLPTEAAGRAVREYLEVLDDAAFGGATPVRHPSGSTLPTLRRAGPRPRARRRSTPTAPTS >Mature_224_residues MMGERTVMQEALFYSFSIENHVPADHLLRSIDRFVDLGGLREHLRPYYSEMGRPSIDPELMNRMLIIGYCMGIRSERRLC EAVHLNLAYRWFCRLGLEGAVPDHSTFSKNRHGRFRDSDLLRRLFEMAVERCMAEGLVGGEGFAVDASLIRADVHRQRSV TGEEGLPTEAAGRAVREYLEVLDDAAFGGATPVRHPSGSTLPTLRRAGPRPRARRRSTPTAPTS
Specific function: Unknown
COG id: COG3666
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25226; Mature: 25226
Theoretical pI: Translated: 8.64; Mature: 8.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMGERTVMQEALFYSFSIENHVPADHLLRSIDRFVDLGGLREHLRPYYSEMGRPSIDPEL CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH MNRMLIIGYCMGIRSERRLCEAVHLNLAYRWFCRLGLEGAVPDHSTFSKNRHGRFRDSDL HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCHHH LRRLFEMAVERCMAEGLVGGEGFAVDASLIRADVHRQRSVTGEEGLPTEAAGRAVREYLE HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH VLDDAAFGGATPVRHPSGSTLPTLRRAGPRPRARRRSTPTAPTS HHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCHHHCCCCCCCCCC >Mature Secondary Structure MMGERTVMQEALFYSFSIENHVPADHLLRSIDRFVDLGGLREHLRPYYSEMGRPSIDPEL CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH MNRMLIIGYCMGIRSERRLCEAVHLNLAYRWFCRLGLEGAVPDHSTFSKNRHGRFRDSDL HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCHHH LRRLFEMAVERCMAEGLVGGEGFAVDASLIRADVHRQRSVTGEEGLPTEAAGRAVREYLE HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH VLDDAAFGGATPVRHPSGSTLPTLRRAGPRPRARRRSTPTAPTS HHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA