Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is yjjL [H]

Identifier: 103486307

GI number: 103486307

Start: 820239

End: 821849

Strand: Direct

Name: yjjL [H]

Synonym: Sala_0816

Alternate gene names: 103486307

Gene position: 820239-821849 (Clockwise)

Preceding gene: 103486305

Following gene: 103486309

Centisome position: 24.52

GC content: 67.54

Gene sequence:

>1611_bases
ATGGCCGATGTCGCGAGCGAGAACAGCATGTCCGGTGCATCGGCGCCCGCCGAACTCAAGGCCAGCGGATATAGCTGGTA
TGTGCTGTCGGTGCTCGTTGTCGTCTATATCCTGAACTTCATCGACCGGCAGATCATCAGCATCCTGGCGGTGGACATCA
AGGCCGACCTTCAGCTCAGCGATTCGGACATGGGTTTTCTCGGCGGCGCCGCCTTTGCGGTCTTCTACGCGCTGTTCGGC
ATCCCGCTCGGCCGTCTCGCCGACAATTGGAGCCGCGTGAAGCTGCTGTCGATCGGCCTGACCCTGTGGTCGGCGATGAC
CGCTTTTTCGGGCTTCGCCCATGACCGGCTGACGCTGACGCTGGCGCGCATGGGGGTCGGCGTCGGCGAAGCGACCGCGA
GCCCCACCGCCTATTCGCTGATCTCCGACTATTTCCCGAAACGACAAAAGGCGACCGCACTCGCCATCTATTCGTCGGGG
CTCTATCTCGGCGGCGGCGTGTCGCTGTTCATCGGCGCGGTGATCGTCGAAAGCTGGAACCGCGCCTTTCCGGCGGGCGG
ACCGCTGGGACTCGTCGGCTGGCAGGCGGCGTTCCTCGCGGTCGGCATCCCCGGCCTGCTGCTCGCGCTGTGGGTCGCCA
GCCTGCGCGAACCGGTGCGCGGCGCGATGGACGGGGTACCGACGCAAAGCTCGCCCACGCCCTTCCGCGCGTTCGGAAGG
GATTTGTCGATGATCGTGCCGCCGCTCACCCTCTATGGCGCGTGGCAGCGCGGGCCCGCGGCGCTCGCGATCAACATCGG
CGTCGCCGCCGCGCTCGCCGCCTTTGCCTGGTGGATGATCGAACTCACCGGAAATCTGCCGCAATGGTCGGCGGTCGCGC
TCGGCTATTATGCCGTCTTTTCGTGGGCGAGCACGCTGCGCGCCAATGATCCCGCGACCTTCCGCCTGATCTGGGGCACG
CCCGCCTTCATCTGCACGACGCTCGGCTATGGGCTCGTCGCGCTCGCCGCCTATGCGCTTGCCTTCTGGTCGGCGCCCTA
TGCCGAAGTCGTGCTGGGCCTGCCCAAGCAGCAGCTTGCCTCGATTCTCGGCGCCAATGGCGCGCTCAGCGGCTTCATCG
GCGTCATCATCGGCGGGCGCGTCGCCGACGCGCTGCGCGCGCGCCACCCCGCGGGACGGATCTGGATGATCCTGTTCGGC
GTCGTCGCGCCGGTCATCCCCATCTGGATCGGCTACACAACTGAAATTGCCGCGCTTTTCTATACGATGAACTTCCTCGC
CGGGCTGTTCGGCGCCGCGGCGCTCGGCGCGGCCGCCGCGACCACGCAGGATCTGGTGCTGCCGCAGATGCGCGGCACCG
CGACCGCCGCCTTTTTCCTCGGCACGACGCTGATCGGCCTGTCCTTCGGCCCCTATATGGTCGGACAGATTTCGGATCTG
ACGGGCACGGTGGTGAACGGCCAGCCCGTTGGCAATCTGCGCACCGGCATCCTGTCGCTGATCGGCGTCGCGCCGGTCGC
GGTCGCGCTGCTGTTCTATGCCTATCGCGCGCTGCCGGAGGCCGAGGCGACGCTCGTGCAGCGTGCGGCCGCGGCGCGCG
GCGGCGCCTGA

Upstream 100 bases:

>100_bases
CCTGCTCCGCCAAAGTTGAACCGACTTTCAACTTGCGCCGCCGTGCGGCTCTGCTAGCCATGGTGCGCAACAGATAGAGG
GTCCGGGAGAGGGTTGCCAT

Downstream 100 bases:

>100_bases
CCGGTCAGCCGCCGACGGGACCGCCCGCGACGATCACGCCGCACGCAACACGCCCACCGCTGTTGCCGCTGGGATCGGTC
TTCATATCGTCGGGACCGGC

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 536; Mature: 535

Protein sequence:

>536_residues
MADVASENSMSGASAPAELKASGYSWYVLSVLVVVYILNFIDRQIISILAVDIKADLQLSDSDMGFLGGAAFAVFYALFG
IPLGRLADNWSRVKLLSIGLTLWSAMTAFSGFAHDRLTLTLARMGVGVGEATASPTAYSLISDYFPKRQKATALAIYSSG
LYLGGGVSLFIGAVIVESWNRAFPAGGPLGLVGWQAAFLAVGIPGLLLALWVASLREPVRGAMDGVPTQSSPTPFRAFGR
DLSMIVPPLTLYGAWQRGPAALAINIGVAAALAAFAWWMIELTGNLPQWSAVALGYYAVFSWASTLRANDPATFRLIWGT
PAFICTTLGYGLVALAAYALAFWSAPYAEVVLGLPKQQLASILGANGALSGFIGVIIGGRVADALRARHPAGRIWMILFG
VVAPVIPIWIGYTTEIAALFYTMNFLAGLFGAAALGAAAATTQDLVLPQMRGTATAAFFLGTTLIGLSFGPYMVGQISDL
TGTVVNGQPVGNLRTGILSLIGVAPVAVALLFYAYRALPEAEATLVQRAAAARGGA

Sequences:

>Translated_536_residues
MADVASENSMSGASAPAELKASGYSWYVLSVLVVVYILNFIDRQIISILAVDIKADLQLSDSDMGFLGGAAFAVFYALFG
IPLGRLADNWSRVKLLSIGLTLWSAMTAFSGFAHDRLTLTLARMGVGVGEATASPTAYSLISDYFPKRQKATALAIYSSG
LYLGGGVSLFIGAVIVESWNRAFPAGGPLGLVGWQAAFLAVGIPGLLLALWVASLREPVRGAMDGVPTQSSPTPFRAFGR
DLSMIVPPLTLYGAWQRGPAALAINIGVAAALAAFAWWMIELTGNLPQWSAVALGYYAVFSWASTLRANDPATFRLIWGT
PAFICTTLGYGLVALAAYALAFWSAPYAEVVLGLPKQQLASILGANGALSGFIGVIIGGRVADALRARHPAGRIWMILFG
VVAPVIPIWIGYTTEIAALFYTMNFLAGLFGAAALGAAAATTQDLVLPQMRGTATAAFFLGTTLIGLSFGPYMVGQISDL
TGTVVNGQPVGNLRTGILSLIGVAPVAVALLFYAYRALPEAEATLVQRAAAARGGA
>Mature_535_residues
ADVASENSMSGASAPAELKASGYSWYVLSVLVVVYILNFIDRQIISILAVDIKADLQLSDSDMGFLGGAAFAVFYALFGI
PLGRLADNWSRVKLLSIGLTLWSAMTAFSGFAHDRLTLTLARMGVGVGEATASPTAYSLISDYFPKRQKATALAIYSSGL
YLGGGVSLFIGAVIVESWNRAFPAGGPLGLVGWQAAFLAVGIPGLLLALWVASLREPVRGAMDGVPTQSSPTPFRAFGRD
LSMIVPPLTLYGAWQRGPAALAINIGVAAALAAFAWWMIELTGNLPQWSAVALGYYAVFSWASTLRANDPATFRLIWGTP
AFICTTLGYGLVALAAYALAFWSAPYAEVVLGLPKQQLASILGANGALSGFIGVIIGGRVADALRARHPAGRIWMILFGV
VAPVIPIWIGYTTEIAALFYTMNFLAGLFGAAALGAAAATTQDLVLPQMRGTATAAFFLGTTLIGLSFGPYMVGQISDLT
GTVVNGQPVGNLRTGILSLIGVAPVAVALLFYAYRALPEAEATLVQRAAAARGGA

Specific function: Responsible for the transport of L-galactonate from the periplasm across the inner membrane (Probable). Is essential for growth on L-galactonate as the sole carbon source [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]

Homologues:

Organism=Homo sapiens, GI185136021, Length=161, Percent_Identity=29.1925465838509, Blast_Score=66, Evalue=7e-11,
Organism=Escherichia coli, GI2367379, Length=174, Percent_Identity=27.0114942528736, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1789515, Length=210, Percent_Identity=29.0476190476191, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87082320, Length=178, Percent_Identity=27.5280898876405, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1789152, Length=220, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71992409, Length=222, Percent_Identity=31.0810810810811, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17539092, Length=458, Percent_Identity=25.3275109170306, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17557872, Length=487, Percent_Identity=22.5872689938398, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24654044, Length=215, Percent_Identity=26.5116279069767, Blast_Score=83, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24654039, Length=235, Percent_Identity=25.531914893617, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24654037, Length=235, Percent_Identity=25.531914893617, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI17864456, Length=235, Percent_Identity=25.531914893617, Blast_Score=82, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24654041, Length=235, Percent_Identity=25.531914893617, Blast_Score=82, Evalue=9e-16,
Organism=Drosophila melanogaster, GI24640209, Length=176, Percent_Identity=28.4090909090909, Blast_Score=77, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 56051; Mature: 55920

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: PS00962 RIBOSOMAL_S2_1 ; PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADVASENSMSGASAPAELKASGYSWYVLSVLVVVYILNFIDRQIISILAVDIKADLQLS
CCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEC
DSDMGFLGGAAFAVFYALFGIPLGRLADNWSRVKLLSIGLTLWSAMTAFSGFAHDRLTLT
CCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LARMGVGVGEATASPTAYSLISDYFPKRQKATALAIYSSGLYLGGGVSLFIGAVIVESWN
HHHHCCCCCCCCCCCHHHHHHHHHCCCHHCCEEEEEEECCEEECCCHHHHHHHHHHHHHC
RAFPAGGPLGLVGWQAAFLAVGIPGLLLALWVASLREPVRGAMDGVPTQSSPTPFRAFGR
CCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCC
DLSMIVPPLTLYGAWQRGPAALAINIGVAAALAAFAWWMIELTGNLPQWSAVALGYYAVF
CHHHHCCCHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
SWASTLRANDPATFRLIWGTPAFICTTLGYGLVALAAYALAFWSAPYAEVVLGLPKQQLA
HHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHH
SILGANGALSGFIGVIIGGRVADALRARHPAGRIWMILFGVVAPVIPIWIGYTTEIAALF
HHHCCCCHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
YTMNFLAGLFGAAALGAAAATTQDLVLPQMRGTATAAFFLGTTLIGLSFGPYMVGQISDL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCC
TGTVVNGQPVGNLRTGILSLIGVAPVAVALLFYAYRALPEAEATLVQRAAAARGGA
CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ADVASENSMSGASAPAELKASGYSWYVLSVLVVVYILNFIDRQIISILAVDIKADLQLS
CCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEC
DSDMGFLGGAAFAVFYALFGIPLGRLADNWSRVKLLSIGLTLWSAMTAFSGFAHDRLTLT
CCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LARMGVGVGEATASPTAYSLISDYFPKRQKATALAIYSSGLYLGGGVSLFIGAVIVESWN
HHHHCCCCCCCCCCCHHHHHHHHHCCCHHCCEEEEEEECCEEECCCHHHHHHHHHHHHHC
RAFPAGGPLGLVGWQAAFLAVGIPGLLLALWVASLREPVRGAMDGVPTQSSPTPFRAFGR
CCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCC
DLSMIVPPLTLYGAWQRGPAALAINIGVAAALAAFAWWMIELTGNLPQWSAVALGYYAVF
CHHHHCCCHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
SWASTLRANDPATFRLIWGTPAFICTTLGYGLVALAAYALAFWSAPYAEVVLGLPKQQLA
HHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHH
SILGANGALSGFIGVIIGGRVADALRARHPAGRIWMILFGVVAPVIPIWIGYTTEIAALF
HHHCCCCHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
YTMNFLAGLFGAAALGAAAATTQDLVLPQMRGTATAAFFLGTTLIGLSFGPYMVGQISDL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCC
TGTVVNGQPVGNLRTGILSLIGVAPVAVALLFYAYRALPEAEATLVQRAAAARGGA
CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]