| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yjjL [H]
Identifier: 103486307
GI number: 103486307
Start: 820239
End: 821849
Strand: Direct
Name: yjjL [H]
Synonym: Sala_0816
Alternate gene names: 103486307
Gene position: 820239-821849 (Clockwise)
Preceding gene: 103486305
Following gene: 103486309
Centisome position: 24.52
GC content: 67.54
Gene sequence:
>1611_bases ATGGCCGATGTCGCGAGCGAGAACAGCATGTCCGGTGCATCGGCGCCCGCCGAACTCAAGGCCAGCGGATATAGCTGGTA TGTGCTGTCGGTGCTCGTTGTCGTCTATATCCTGAACTTCATCGACCGGCAGATCATCAGCATCCTGGCGGTGGACATCA AGGCCGACCTTCAGCTCAGCGATTCGGACATGGGTTTTCTCGGCGGCGCCGCCTTTGCGGTCTTCTACGCGCTGTTCGGC ATCCCGCTCGGCCGTCTCGCCGACAATTGGAGCCGCGTGAAGCTGCTGTCGATCGGCCTGACCCTGTGGTCGGCGATGAC CGCTTTTTCGGGCTTCGCCCATGACCGGCTGACGCTGACGCTGGCGCGCATGGGGGTCGGCGTCGGCGAAGCGACCGCGA GCCCCACCGCCTATTCGCTGATCTCCGACTATTTCCCGAAACGACAAAAGGCGACCGCACTCGCCATCTATTCGTCGGGG CTCTATCTCGGCGGCGGCGTGTCGCTGTTCATCGGCGCGGTGATCGTCGAAAGCTGGAACCGCGCCTTTCCGGCGGGCGG ACCGCTGGGACTCGTCGGCTGGCAGGCGGCGTTCCTCGCGGTCGGCATCCCCGGCCTGCTGCTCGCGCTGTGGGTCGCCA GCCTGCGCGAACCGGTGCGCGGCGCGATGGACGGGGTACCGACGCAAAGCTCGCCCACGCCCTTCCGCGCGTTCGGAAGG GATTTGTCGATGATCGTGCCGCCGCTCACCCTCTATGGCGCGTGGCAGCGCGGGCCCGCGGCGCTCGCGATCAACATCGG CGTCGCCGCCGCGCTCGCCGCCTTTGCCTGGTGGATGATCGAACTCACCGGAAATCTGCCGCAATGGTCGGCGGTCGCGC TCGGCTATTATGCCGTCTTTTCGTGGGCGAGCACGCTGCGCGCCAATGATCCCGCGACCTTCCGCCTGATCTGGGGCACG CCCGCCTTCATCTGCACGACGCTCGGCTATGGGCTCGTCGCGCTCGCCGCCTATGCGCTTGCCTTCTGGTCGGCGCCCTA TGCCGAAGTCGTGCTGGGCCTGCCCAAGCAGCAGCTTGCCTCGATTCTCGGCGCCAATGGCGCGCTCAGCGGCTTCATCG GCGTCATCATCGGCGGGCGCGTCGCCGACGCGCTGCGCGCGCGCCACCCCGCGGGACGGATCTGGATGATCCTGTTCGGC GTCGTCGCGCCGGTCATCCCCATCTGGATCGGCTACACAACTGAAATTGCCGCGCTTTTCTATACGATGAACTTCCTCGC CGGGCTGTTCGGCGCCGCGGCGCTCGGCGCGGCCGCCGCGACCACGCAGGATCTGGTGCTGCCGCAGATGCGCGGCACCG CGACCGCCGCCTTTTTCCTCGGCACGACGCTGATCGGCCTGTCCTTCGGCCCCTATATGGTCGGACAGATTTCGGATCTG ACGGGCACGGTGGTGAACGGCCAGCCCGTTGGCAATCTGCGCACCGGCATCCTGTCGCTGATCGGCGTCGCGCCGGTCGC GGTCGCGCTGCTGTTCTATGCCTATCGCGCGCTGCCGGAGGCCGAGGCGACGCTCGTGCAGCGTGCGGCCGCGGCGCGCG GCGGCGCCTGA
Upstream 100 bases:
>100_bases CCTGCTCCGCCAAAGTTGAACCGACTTTCAACTTGCGCCGCCGTGCGGCTCTGCTAGCCATGGTGCGCAACAGATAGAGG GTCCGGGAGAGGGTTGCCAT
Downstream 100 bases:
>100_bases CCGGTCAGCCGCCGACGGGACCGCCCGCGACGATCACGCCGCACGCAACACGCCCACCGCTGTTGCCGCTGGGATCGGTC TTCATATCGTCGGGACCGGC
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 536; Mature: 535
Protein sequence:
>536_residues MADVASENSMSGASAPAELKASGYSWYVLSVLVVVYILNFIDRQIISILAVDIKADLQLSDSDMGFLGGAAFAVFYALFG IPLGRLADNWSRVKLLSIGLTLWSAMTAFSGFAHDRLTLTLARMGVGVGEATASPTAYSLISDYFPKRQKATALAIYSSG LYLGGGVSLFIGAVIVESWNRAFPAGGPLGLVGWQAAFLAVGIPGLLLALWVASLREPVRGAMDGVPTQSSPTPFRAFGR DLSMIVPPLTLYGAWQRGPAALAINIGVAAALAAFAWWMIELTGNLPQWSAVALGYYAVFSWASTLRANDPATFRLIWGT PAFICTTLGYGLVALAAYALAFWSAPYAEVVLGLPKQQLASILGANGALSGFIGVIIGGRVADALRARHPAGRIWMILFG VVAPVIPIWIGYTTEIAALFYTMNFLAGLFGAAALGAAAATTQDLVLPQMRGTATAAFFLGTTLIGLSFGPYMVGQISDL TGTVVNGQPVGNLRTGILSLIGVAPVAVALLFYAYRALPEAEATLVQRAAAARGGA
Sequences:
>Translated_536_residues MADVASENSMSGASAPAELKASGYSWYVLSVLVVVYILNFIDRQIISILAVDIKADLQLSDSDMGFLGGAAFAVFYALFG IPLGRLADNWSRVKLLSIGLTLWSAMTAFSGFAHDRLTLTLARMGVGVGEATASPTAYSLISDYFPKRQKATALAIYSSG LYLGGGVSLFIGAVIVESWNRAFPAGGPLGLVGWQAAFLAVGIPGLLLALWVASLREPVRGAMDGVPTQSSPTPFRAFGR DLSMIVPPLTLYGAWQRGPAALAINIGVAAALAAFAWWMIELTGNLPQWSAVALGYYAVFSWASTLRANDPATFRLIWGT PAFICTTLGYGLVALAAYALAFWSAPYAEVVLGLPKQQLASILGANGALSGFIGVIIGGRVADALRARHPAGRIWMILFG VVAPVIPIWIGYTTEIAALFYTMNFLAGLFGAAALGAAAATTQDLVLPQMRGTATAAFFLGTTLIGLSFGPYMVGQISDL TGTVVNGQPVGNLRTGILSLIGVAPVAVALLFYAYRALPEAEATLVQRAAAARGGA >Mature_535_residues ADVASENSMSGASAPAELKASGYSWYVLSVLVVVYILNFIDRQIISILAVDIKADLQLSDSDMGFLGGAAFAVFYALFGI PLGRLADNWSRVKLLSIGLTLWSAMTAFSGFAHDRLTLTLARMGVGVGEATASPTAYSLISDYFPKRQKATALAIYSSGL YLGGGVSLFIGAVIVESWNRAFPAGGPLGLVGWQAAFLAVGIPGLLLALWVASLREPVRGAMDGVPTQSSPTPFRAFGRD LSMIVPPLTLYGAWQRGPAALAINIGVAAALAAFAWWMIELTGNLPQWSAVALGYYAVFSWASTLRANDPATFRLIWGTP AFICTTLGYGLVALAAYALAFWSAPYAEVVLGLPKQQLASILGANGALSGFIGVIIGGRVADALRARHPAGRIWMILFGV VAPVIPIWIGYTTEIAALFYTMNFLAGLFGAAALGAAAATTQDLVLPQMRGTATAAFFLGTTLIGLSFGPYMVGQISDLT GTVVNGQPVGNLRTGILSLIGVAPVAVALLFYAYRALPEAEATLVQRAAAARGGA
Specific function: Responsible for the transport of L-galactonate from the periplasm across the inner membrane (Probable). Is essential for growth on L-galactonate as the sole carbon source [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]
Homologues:
Organism=Homo sapiens, GI185136021, Length=161, Percent_Identity=29.1925465838509, Blast_Score=66, Evalue=7e-11, Organism=Escherichia coli, GI2367379, Length=174, Percent_Identity=27.0114942528736, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1789515, Length=210, Percent_Identity=29.0476190476191, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI87082320, Length=178, Percent_Identity=27.5280898876405, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI1789152, Length=220, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71992409, Length=222, Percent_Identity=31.0810810810811, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17539092, Length=458, Percent_Identity=25.3275109170306, Blast_Score=76, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17557872, Length=487, Percent_Identity=22.5872689938398, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24654044, Length=215, Percent_Identity=26.5116279069767, Blast_Score=83, Evalue=6e-16, Organism=Drosophila melanogaster, GI24654039, Length=235, Percent_Identity=25.531914893617, Blast_Score=82, Evalue=6e-16, Organism=Drosophila melanogaster, GI24654037, Length=235, Percent_Identity=25.531914893617, Blast_Score=82, Evalue=7e-16, Organism=Drosophila melanogaster, GI17864456, Length=235, Percent_Identity=25.531914893617, Blast_Score=82, Evalue=8e-16, Organism=Drosophila melanogaster, GI24654041, Length=235, Percent_Identity=25.531914893617, Blast_Score=82, Evalue=9e-16, Organism=Drosophila melanogaster, GI24640209, Length=176, Percent_Identity=28.4090909090909, Blast_Score=77, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 56051; Mature: 55920
Theoretical pI: Translated: 9.22; Mature: 9.22
Prosite motif: PS00962 RIBOSOMAL_S2_1 ; PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADVASENSMSGASAPAELKASGYSWYVLSVLVVVYILNFIDRQIISILAVDIKADLQLS CCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEC DSDMGFLGGAAFAVFYALFGIPLGRLADNWSRVKLLSIGLTLWSAMTAFSGFAHDRLTLT CCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH LARMGVGVGEATASPTAYSLISDYFPKRQKATALAIYSSGLYLGGGVSLFIGAVIVESWN HHHHCCCCCCCCCCCHHHHHHHHHCCCHHCCEEEEEEECCEEECCCHHHHHHHHHHHHHC RAFPAGGPLGLVGWQAAFLAVGIPGLLLALWVASLREPVRGAMDGVPTQSSPTPFRAFGR CCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCC DLSMIVPPLTLYGAWQRGPAALAINIGVAAALAAFAWWMIELTGNLPQWSAVALGYYAVF CHHHHCCCHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH SWASTLRANDPATFRLIWGTPAFICTTLGYGLVALAAYALAFWSAPYAEVVLGLPKQQLA HHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHH SILGANGALSGFIGVIIGGRVADALRARHPAGRIWMILFGVVAPVIPIWIGYTTEIAALF HHHCCCCHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH YTMNFLAGLFGAAALGAAAATTQDLVLPQMRGTATAAFFLGTTLIGLSFGPYMVGQISDL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCC TGTVVNGQPVGNLRTGILSLIGVAPVAVALLFYAYRALPEAEATLVQRAAAARGGA CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure ADVASENSMSGASAPAELKASGYSWYVLSVLVVVYILNFIDRQIISILAVDIKADLQLS CCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEC DSDMGFLGGAAFAVFYALFGIPLGRLADNWSRVKLLSIGLTLWSAMTAFSGFAHDRLTLT CCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH LARMGVGVGEATASPTAYSLISDYFPKRQKATALAIYSSGLYLGGGVSLFIGAVIVESWN HHHHCCCCCCCCCCCHHHHHHHHHCCCHHCCEEEEEEECCEEECCCHHHHHHHHHHHHHC RAFPAGGPLGLVGWQAAFLAVGIPGLLLALWVASLREPVRGAMDGVPTQSSPTPFRAFGR CCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCC DLSMIVPPLTLYGAWQRGPAALAINIGVAAALAAFAWWMIELTGNLPQWSAVALGYYAVF CHHHHCCCHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH SWASTLRANDPATFRLIWGTPAFICTTLGYGLVALAAYALAFWSAPYAEVVLGLPKQQLA HHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHH SILGANGALSGFIGVIIGGRVADALRARHPAGRIWMILFGVVAPVIPIWIGYTTEIAALF HHHCCCCHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH YTMNFLAGLFGAAALGAAAATTQDLVLPQMRGTATAAFFLGTTLIGLSFGPYMVGQISDL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCC TGTVVNGQPVGNLRTGILSLIGVAPVAVALLFYAYRALPEAEATLVQRAAAARGGA CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]