Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103486266

Identifier: 103486266

GI number: 103486266

Start: 780895

End: 781818

Strand: Direct

Name: 103486266

Synonym: Sala_0774

Alternate gene names: NA

Gene position: 780895-781818 (Clockwise)

Preceding gene: 103486258

Following gene: 103486267

Centisome position: 23.34

GC content: 66.88

Gene sequence:

>924_bases
GTGCCTGCGAAACCAAGGGGACAATCGATTCTGGCCAGAGACGACATCCGCCGCGAATGGGCCGATCATTATTGGTGGTC
GCAGGACGGCGTCCGGCTGCACGCGCGCGTCTATCCCGCGGTTGATGCAAGTGAAAGCTCCCCGCCGATCCTGTGTATGC
CAGGACTGGCGCGCAACGCGCGCGATTTCGAGGATTTGGCCCCGCATCTCGCGCAGCGGCGCCAGGTTATCGTGATCGAG
TTTCGCGGTCGCGGCGAGAGCGCCTATGCCAGGGATCCGATGACCTATGTGCCGCTCACCTATGTGCAGGATGTCGTGGC
GCTGCTGGACGATTTGGGCATTGCGCGCTTTGCGACGATCGGCACCTCGCTCGGCGGACTGGTGTCGATGCTGATGGCGG
CGAGCCTGCCGGGGCGGATCGTCGGCGCGGTGCTCAACGATGTCGGACCCGAATTGCAGACCGCGGGGCTGGATCGCATC
CGCGATTATATCGGCGCGGGCGGCAGTCAGCCGACATGGATGCACGCGGCGCGCGCCTTTGCCGAACTCAACGGCGCCAT
CTATCCGAACTATGGCATTCACGACTGGCTGCGGCTCACCAAGCGCACGCACAAGCTGACCCCCGAAGGGCGGATCGTTA
CCGATTATGACAAGCAGATCGCGGCGCCGCTGCGGGTGCCGAACGGCGGCGACGCGGGCCTCGACCTGTGGCCCGCCTAT
CGCGCGCTCGGCGCGGTGCCGCTGCTGATCCTGCGCGGTGCGCTGTCGGACATACTGGCGCGCAGTGCGGCGGAAAAAAT
GGCTGCCGAACTGCCCGGCGCGCGCTTCGTCGAGGTGCCGGGCGTCGGCCACGCACCGACGCTGGACGAGCCCGAAGCCC
GCACCGCGATCGACGCATGGATGGCGGAGTTGCCGCGCGCGTGA

Upstream 100 bases:

>100_bases
CGTGCGGCGGCAACCGCCACGGGCGTCTTCGCGACGGATGGCTTGCGCCGATGCGCCGGGTTGGCGATAGACGGGCGCGA
CTCCCGCATTGCATGAGCGG

Downstream 100 bases:

>100_bases
ACGCCGACCCACCCGAAAGATTGCGGCCGGTTCATATCCTGCACCTTCATTCGAGCTTCGCGCTCGGCGGCAAGGAGGCG
CGCGCGGTCCGCCTGATGAA

Product: alpha/beta hydrolase fold

Products: NA

Alternate protein names: Alpha/Beta Hydrolase Fold; Hydrolase; Hydrolase Alpha/Beta Fold Family; Alpha/Beta Hydrolase; Alpha/Beta Fold Family Hydrolase; Hydrolase Or Acyltransferase; Hydrolase Protein; Alpha/Beta Hydrolase Fold Family Protein; Hydrolases Or Acyltransferases; Esterase/Lipase/Thioesterase Family Protein; Hydrolase/Acyltransferase; D-(-)-3-Hydroxybutyrate Oligomer Hydrolase; 2-Hydroxy-6-Oxo-6-Phenylhexa-2 4-Dienoate Hydrolase; Cation Diffusion Facilitator Family Transporter; 3-Oxoadipate Enol-Lactonase; Peroxidase BpoB; Hydroxybutyrate-Dimer Hydrolase Protein; Alpha/Beta Hydrolase Fold Family; Hydrolase / Acyltransferase; Prolyl Aminopetidase; Hydrolase Alpha/Beta Fold Family Protein; Alpha/Beta Hydrolase Fold-Containing Protein

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MPAKPRGQSILARDDIRREWADHYWWSQDGVRLHARVYPAVDASESSPPILCMPGLARNARDFEDLAPHLAQRRQVIVIE
FRGRGESAYARDPMTYVPLTYVQDVVALLDDLGIARFATIGTSLGGLVSMLMAASLPGRIVGAVLNDVGPELQTAGLDRI
RDYIGAGGSQPTWMHAARAFAELNGAIYPNYGIHDWLRLTKRTHKLTPEGRIVTDYDKQIAAPLRVPNGGDAGLDLWPAY
RALGAVPLLILRGALSDILARSAAEKMAAELPGARFVEVPGVGHAPTLDEPEARTAIDAWMAELPRA

Sequences:

>Translated_307_residues
MPAKPRGQSILARDDIRREWADHYWWSQDGVRLHARVYPAVDASESSPPILCMPGLARNARDFEDLAPHLAQRRQVIVIE
FRGRGESAYARDPMTYVPLTYVQDVVALLDDLGIARFATIGTSLGGLVSMLMAASLPGRIVGAVLNDVGPELQTAGLDRI
RDYIGAGGSQPTWMHAARAFAELNGAIYPNYGIHDWLRLTKRTHKLTPEGRIVTDYDKQIAAPLRVPNGGDAGLDLWPAY
RALGAVPLLILRGALSDILARSAAEKMAAELPGARFVEVPGVGHAPTLDEPEARTAIDAWMAELPRA
>Mature_306_residues
PAKPRGQSILARDDIRREWADHYWWSQDGVRLHARVYPAVDASESSPPILCMPGLARNARDFEDLAPHLAQRRQVIVIEF
RGRGESAYARDPMTYVPLTYVQDVVALLDDLGIARFATIGTSLGGLVSMLMAASLPGRIVGAVLNDVGPELQTAGLDRIR
DYIGAGGSQPTWMHAARAFAELNGAIYPNYGIHDWLRLTKRTHKLTPEGRIVTDYDKQIAAPLRVPNGGDAGLDLWPAYR
ALGAVPLLILRGALSDILARSAAEKMAAELPGARFVEVPGVGHAPTLDEPEARTAIDAWMAELPRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33453; Mature: 33321

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAKPRGQSILARDDIRREWADHYWWSQDGVRLHARVYPAVDASESSPPILCMPGLARNA
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCEEECCCCCCCC
RDFEDLAPHLAQRRQVIVIEFRGRGESAYARDPMTYVPLTYVQDVVALLDDLGIARFATI
CCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
GTSLGGLVSMLMAASLPGRIVGAVLNDVGPELQTAGLDRIRDYIGAGGSQPTWMHAARAF
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
AELNGAIYPNYGIHDWLRLTKRTHKLTPEGRIVTDYDKQIAAPLRVPNGGDAGLDLWPAY
HHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCHHHHHCCCCCCCCCCCCCHHHHHH
RALGAVPLLILRGALSDILARSAAEKMAAELPGARFVEVPGVGHAPTLDEPEARTAIDAW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHH
MAELPRA
HHHCCCC
>Mature Secondary Structure 
PAKPRGQSILARDDIRREWADHYWWSQDGVRLHARVYPAVDASESSPPILCMPGLARNA
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCEEECCCCCCCC
RDFEDLAPHLAQRRQVIVIEFRGRGESAYARDPMTYVPLTYVQDVVALLDDLGIARFATI
CCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
GTSLGGLVSMLMAASLPGRIVGAVLNDVGPELQTAGLDRIRDYIGAGGSQPTWMHAARAF
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
AELNGAIYPNYGIHDWLRLTKRTHKLTPEGRIVTDYDKQIAAPLRVPNGGDAGLDLWPAY
HHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCHHHHHCCCCCCCCCCCCCHHHHHH
RALGAVPLLILRGALSDILARSAAEKMAAELPGARFVEVPGVGHAPTLDEPEARTAIDAW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHH
MAELPRA
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA